LOC110499098


Basic Information

Item Value
gene id LOC110499098
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21518345 ~ 21562573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037959.1
TGTGGGCAAGGGAAAGCAAGTTGAGGGAGCCCAGCTGAGAGAAGATCTCTGGCTCGATCTCCTCCGCCGGGTTATGGTCAATCAGTAGCTGCTTCAGCGAGGAGAGGCCGCCGAACGCCTCCTGCAGACGTAGAGGAAGAGAGTGTGGAGCTTTTAATTTGCAATACCAACTTCTCCCAGCAACATAGTCAAACCGCAGCAAAGAAACAGTCACATATAACACTGTCTCGATCTATTTTACCTGATAGTGGATCTCGATGTTGTTGTTGGCCAGGTTGAGGAAGACGAGGCGGCCCAGAGCACGGAACGCCCCTTCCTTTATGGTGTGGATGTTGCTGCGCTGCATGGACAGGTGCATCAGATGTCCTCCAATGGGCAGAATCTTTGACTGACATTGCATCAGTTGATCTATCCAACGCCCAGTGTATCCCCGCCCCTCTGGCCACACCCATCCCTGTTAGCGATGACCCCTCGAGCCCAGTAGCCCCAGTACAGGCCTGCCCCGCATGCCCTACTCTGTCCCCGTGTCGGAGCACATGGAGGAGTGCAGCGTGATCCCCGACGATCTGGACAGCCTGCTGGGGGATGACTGCATCTCCGAGAAAGTCAGCGAGAGGTCCAGGAGCGCCAGGAATGCCAGTATGGGGAGAACTGCACGTTTGCCTACTGCCAGGAGGAAATATACCTGTGGACCCAGGAGAGGAAGGGGGCTCTGAGAAGGGAGCTGCTGTTTGACCCACTGGGCAGCACCGAGAGACGGGCACTCAGCGTCACACTCCTGCTGCAGCAGCACATGGGCATGTTCATGTTCCTCTGTGAGACTGTTTTGACAGTAAGCCTCCCATCATCAGCAAGTGCAGCAAAGAGAACTTGGCTGTCTGCTCAAACCTCACTGCCCGGCATCCCTTTGATGATAAGTGCCTAGTGCATGTGGTGTGTTCTGCCAACGTGCGCCACAGTAAGGTGCGCCCGCTGCACCCCCTCTGCCAGTTTGACATGTCGCCACGAGGTGCGTTACGGCTGCCAGCGCGAGGACAGCTGCTCCTTTGCCCACTCCGTCATAGAACTCAAGTGCTAGGTGCTGCAGCAGGACACCGgtatCACCCATGAAGAGATGGTACAGAAGTCCAAGAGGCTCTGGTACAGGCTAGAGCAAAATGCTCAGAAACAGAAGCCTGTGCACGTCACACACCAGAGCTGTGGTGGGGGGGAATAGGGGGAGTGGGAGACAACCTCAGGGGTGGAGGGGATGGCAGGGGGTTAAACCTGAAGATGAAGTTTGTCTGTGGCCAGAGTGATGGACAGGTCCACGAACCAGACAAGGCCCTCAAGTACTGCACGACAGCTGGACTAAGGAGCGTTGGGTATTGCTGGTAAAGTCTTTGGAGAAGAAGAAGTGGGTCGTTGTGCGGCCTCTTCTCCCGTGCATACCCACAGCAGTATGACGCAGTCATTTCCAGCAGACCTCTCACATGCTGAATACAGCTGATGTTGTTTACAGCTCTCCTCTTCTCGTCTTTACACCTATAGGCAGCTTGGCCTTTGTTCCACGATGTGTGTCCATGTGATGAAGCAGAAGAAGTGCCACTGACATCGGGAACTGTTCCTTTGCCCACATTCTGGAAGAAAGGGACGTCTGGACGTACATGAAGAACAACAGCTTGAGGGACATGCAGCAGATGTTTGACATGTGGCTCAGGCTGACCAGTCAGAATAGACTCAATGATGCAAGCCTTATGGCCTCGCCTCTGGAGGAGAAATGGGTTTCCCTGACAACAGATTCCACTGAGTCATTGGAACGTAGAAAGGTGGAGAGTGAAATAGGACAGAAATTctggagatctgttggcggattggattgtctgactgaccgactgactacaacctttttgtatacggtatttcatttgttttgatgtgatgtatacagtgatgatttatgtagttagttgTATTTGAGGACTTAGTAAGAGTTGATACGCTTTATAGTTGTGTGGTAAAATAATTGTtattgattgtatgattaatactgggtttacgctacacttgagtgaacggacaaacattgcgtgacaaaGGTCACTTGGGTTCtctgaactcctttaccgggctggactctttttagacccgaggta
>XR_005037958.1
TCTACAGGACCAAGCGTCTCATCTCTTGATTTGAGCGCAACTTCATTGGGGAAGAACTGTGTAGAATTTGGGGTAAAAACTCTCACATGTTCCGTCCAGATTCAACAACCATTTACCCTGGACAAATATGTGTCTGGAGGATTAATATTCTATAAGTTATTTAGATAACAGTTTTTGGAGAAGAACAAGGTCGGGCGGGGTGTTGTTTTCGATGTCCTCCAATGGGCAGAATCTTTGACTGACATTGCATCAGTTGATCTATCCAACGCCCAGTGTATCCCCGCCCCTCTGGCCACACCCATCCCTGTTAGCGATGACCCCTCGAGCCCAGTAGCCCCAGTACAGGCCTGCCCCGCATGCCCTACTCTGTCCCCGTGTCGGAGCACATGGAGGAGTGCAGCGTGATCCCCGACGATCTGGACAGCCTGCTGGGGGATGACTGCATCTCCGAGAAAGTCAGCGAGAGGTCCAGGAGCGCCAGGAATGCCAGTATGGGGAGAACTGCACGTTTGCCTACTGCCAGGAGGAAATATACCTGTGGACCCAGGAGAGGAAGGGGGCTCTGAGAAGGGAGCTGCTGTTTGACCCACTGGGCAGCACCGAGAGACGGGCACTCAGCGTCACACTCCTGCTGCAGCAGCACATGGGCATGTTCATGTTCCTCTGTGAGACTGTTTTGACAGTAAGCCTCCCATCATCAGCAAGTGCAGCAAAGAGAACTTGGCTGTCTGCTCAAACCTCACTGCCCGGCATCCCTTTGATGATAAGTGCCTAGTGCATGTGGTGTGTTCTGCCAACGTGCGCCACAGTAAGGTGCGCCCGCTGCACCCCCTCTGCCAGTTTGACATGTCGCCACGAGGTGCGTTACGGCTGCCAGCGCGAGGACAGCTGCTCCTTTGCCCACTCCGTCATAGAACTCAAGTGCTAGGTGCTGCAGCAGGACACCGgtatCACCCATGAAGAGATGGTACAGAAGTCCAAGAGGCTCTGGTACAGGCTAGAGCAAAATGCTCAGAAACAGAAGCCTGTGCACGTCACACACCAGAGCTGTGGTGGGGGGGAATAGGGGGAGTGGGAGACAACCTCAGGGGTGGAGGGGATGGCAGGGGGTTAAACCTGAAGATGAAGTTTGTCTGTGGCCAGAGTGATGGACAGGTCCACGAACCAGACAAGGCCCTCAAGTACTGCACGACAGCTGGACTAAGGAGCGTTGGGTATTGCTGGTAAAGTCTTTGGAGAAGAAGAAGTGGGTCGTTGTGCGGCCTCTTCTCCCGTGCATACCCACAGCAGTATGACGCAGTCATTTCCAGCAGACCTCTCACATGCTGAATACAGCTGATGTTGTTTACAGCTCTCCTCTTCTCGTCTTTACACCTATAGGCAGCTTGGCCTTTGTTCCACGATGTGTGTCCATGTGATGAAGCAGAAGAAGTGCCACTGACATCGGGAACTGTTCCTTTGCCCACATTCTGGAAGAAAGGGACGTCTGGACGTACATGAAGAACAACAGCTTGAGGGACATGCAGCAGATGTTTGACATGTGGCTCAGGCTGACCAGTCAGAATAGACTCAATGATGCAAGCCTTATGGCCTCGCCTCTGGAGGAGAAATGGGTTTCCCTGACAACAGATTCCACTGAGTCATTGGAACGTAGAAAGGTGGAGAGTGAAATAGGACAGAAATTctggagatctgttggcggattggattgtctgactgaccgactgactacaacctttttgtatacggtatttcatttgttttgatgtgatgtatacagtgatgatttatgtagttagttgTATTTGAGGACTTAGTAAGAGTTGATACGCTTTATAGTTGTGTGGTAAAATAATTGTtattgattgtatgattaatactgggtttacgctacacttgagtgaacggacaaacattgcgtgacaaaGGTCACTTGGGTTCtctgaactcctttaccgggctggactctttttagacccgaggta

Function

NR:

description
zinc finger CCCH domain-containing protein 7B-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037959.1 False 2135 mRNA 0.52 14 21518345 21562573
XR_005037958.1 True 1985 mRNA 0.51 14 21545992 21562573

Neighbor

gene id symbol gene type direction distance location
LOC118941998 NA coding upstream 1080 21496394 ~ 21517265 (+)
LOC110499099 LOC106589529 coding upstream 76319 21437535 ~ 21442026 (+)
LOC110499100 LOC106589528 coding upstream 80943 21422168 ~ 21437402 (+)
LOC110499101 ku70 coding upstream 97735 21405522 ~ 21420610 (+)
LOC110499103 LOC106589525 coding upstream 140820 21332294 ~ 21377525 (+)
LOC110499096 LOC106589531 coding downstream 10462 21573035 ~ 21586408 (+)
LOC110499095 LOC106589533 coding downstream 32308 21594881 ~ 21614231 (+)
csdc2a LOC106589535 coding downstream 65332 21627905 ~ 21636035 (+)
si:ch73-139e5.4 LOC106589536 coding downstream 94362 21656935 ~ 21685353 (+)
cby1 cby1 coding downstream 147938 21710511 ~ 21721556 (+)
G1673166 NA non-coding upstream 134736 21382739 ~ 21383609 (+)
G1673183 NA non-coding upstream 163568 21354563 ~ 21354777 (+)
G1673057 NA non-coding upstream 206244 21311742 ~ 21312101 (+)
G1673036 NA non-coding upstream 233355 21284780 ~ 21284990 (+)
G1673333 NA non-coding downstream 58878 21621451 ~ 21621681 (+)
G1673334 NA non-coding downstream 60635 21623208 ~ 21623435 (+)
G1673368 NA non-coding downstream 113452 21676025 ~ 21681986 (+)
G1673369 NA non-coding downstream 113741 21676314 ~ 21682360 (+)
G1673341 kcd17 non-coding downstream 138498 21701071 ~ 21701804 (+)
G1673231 LOC106589530 other upstream 67999 21444883 ~ 21450346 (+)
G1673204 NA other upstream 128567 21386329 ~ 21389778 (+)
G1673063 NA other upstream 200933 21316798 ~ 21317412 (+)
G1673044 NA other upstream 221491 21296372 ~ 21296854 (+)
tnrc6b LOC106589538 other downstream 250672 21806703 ~ 21848442 (+)
LOC110513322 rsl1d1 other downstream 374069 21936590 ~ 21959627 (+)
LOC110499192 LOC106589579 other downstream 1694231 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 2017457 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 3520091 25082664 ~ 25083277 (+)

Expression


Co-expression Network