LOC110499096 (LOC106589531)


Basic Information

Item Value
gene id LOC110499096
gene name LOC106589531
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21573035 ~ 21586408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575992.2
AGGGGCGGGATACAAACCTTGTGGTCATAAAAACGAGGTTTACATTTTCCACATGTCCATCAGTCTCGTTTTACATGTGGATATTTTTTCTGCTGTTGAACTTGGAAGCGTTGATAAATCTTGTCAATTTCATATATCTGCGCCAGTTTTTAATTGATAGTCAGACCAGGAGATCTTTAAAAACTTTTAGAAAAGATGTCTTCAGAGATTCCGGAGATTTTCAAAGCTTTGCTAGAGGACCCCTTCACTGTTCCTACATTTGATTACAACGACAATGACAAGGATAAGCTTTTTACGGGGGACAATGTGGACCTTGGAGGAGGGAGCGGGATGGGTCCGTCGGCCGCCCTGACCCCCGCCATCTGGGATAAGACCATCCCGTACAACGGGGAGACCTTTCACCTGGAGTACATGGACCTGGAGGAGTTCCTCATCGAGAACGGAATCCCCACCTTGTCCCTGGACAATGCTCTCAACATGGAAATTGCAGGGAAGAAGACAGAGAAGCCAACTAGCACCACGACAGCCCCCGCTGCCCCAATCTCCCTGCTGCCGGTCCTGGAACTAGACCAGTGTGAGGAGGAGGTGGTCACCGTCACCCTCAACAGTGCTGATATCACAGCCAACATCGAGGTGGTGACAGACAAGGACAGGCTGACCCCTGAAACCATCGACCCGGAGGAGATTGAGGTGAACGTGAACTTTGATCCGGACCCTACGGACCTGGTCCTGTCCAGCGTTCCTGGAGGAGAGCTGTTCAACCCACGCAAACACAAGTTCTCAGAGGAGGAACTCAAACCACAGCCCATGATCAAGAAGGCCAAGAAGGTGTATGTACCTGAGGATTCTAAGgATGAGAAGTACTggcagaggaggaagaagaacaaCGTGGCGGCAAAGCGTTCCCGGGACGCGCGCCGACTCAAGGAGAACCAGATCACGGTGCGGGCGGCGTTCCTGGAGCGTGAGAACACGGCGCTACGACAGGAAGTGGGCGAGCTACGGAATGACTTTTCCCGCAGCAAGAATGTTGTGGCCCGCTACGTGGCCAAATTCGGAGAGCTTGCATTGCTGGAAGACCAGTAGACTATTATTGATTTATTTGTGGCGTGGGTGAAGTAATTTAATCAAATACAATGGATAGATGGATCAGAAGATGGAGTGTGGAAGAGTGTGAATGATGTTGCCGTGTAGATACTGTGGAATTGTATTAGTGACCGCTGCTTATTGTTTTTAtttgactttttattttatttaatttagggggtagatcagctttaatattgcaaatAGATTGTAGAttgttccatcaatgtaattgtatgcATCATTTCTAATCCCCACCCATATAtttgttttgtaaatatatatttttattttcccctaaccctaccacccctcccctaatttgagtaaactaatggacaacaacactttgGCTTTTTAAGGACACAGTGTATTTTACAATagttgtttttagtcccatccttcagctcccctcaacccatctctgaagaccatccattttttatttaattttaccatatttttaactgtgctgtttcacaaacgttctgaacctatatacattttac
>XM_021575993.2
ACTCTACGAGGTGCGATTTCTCTTGaccaaaaaaacgttttttttttttgttggatTATTTGGAGAATCGATCAGAATCTGAGAGGTTAACTAATGTCGAGTCGTTTGCTGCAACATAACCTTTAGCCTAATCTCGATGTCACTATCTCTGAACTGATAGGCTACTTTTTTTCACGGACAGGAGATTGGTAGGGTAGTCCAAGCTTCATTGTTGAAGTAGCCTATCTTTAAATTTAGTTGTTGCGTAATTACCGGCAAAAATGTCTGGAGAGGATCACAACCAAGAATGAAACATTCAAGGGGTCACCGGGTGCGTTTCCCGTGGTATTGAAGAAAATCATGTTAATGCCCCAACCGAATTTATTCGAGAGCGACGATGACAATGACAAGGATAAGCTTTTTACGGGGGACAATGTGGACCTTGGAGGAGGGAGCGGGATGGGTCCGTCGGCCGCCCTGACCCCCGCCATCTGGGATAAGACCATCCCGTACAACGGGGAGACCTTTCACCTGGAGTACATGGACCTGGAGGAGTTCCTCATCGAGAACGGAATCCCCACCTTGTCCCTGGACAATGCTCTCAACATGGAAATTGCAGGGAAGAAGACAGAGAAGCCAACTAGCACCACGACAGCCCCCGCTGCCCCAATCTCCCTGCTGCCGGTCCTGGAACTAGACCAGTGTGAGGAGGAGGTGGTCACCGTCACCCTCAACAGTGCTGATATCACAGCCAACATCGAGGTGGTGACAGACAAGGACAGGCTGACCCCTGAAACCATCGACCCGGAGGAGATTGAGGTGAACGTGAACTTTGATCCGGACCCTACGGACCTGGTCCTGTCCAGCGTTCCTGGAGGAGAGCTGTTCAACCCACGCAAACACAAGTTCTCAGAGGAGGAACTCAAACCACAGCCCATGATCAAGAAGGCCAAGAAGGTGTATGTACCTGAGGATTCTAAGgATGAGAAGTACTggcagaggaggaagaagaacaaCGTGGCGGCAAAGCGTTCCCGGGACGCGCGCCGACTCAAGGAGAACCAGATCACGGTGCGGGCGGCGTTCCTGGAGCGTGAGAACACGGCGCTACGACAGGAAGTGGGCGAGCTACGGAATGACTTTTCCCGCAGCAAGAATGTTGTGGCCCGCTACGTGGCCAAATTCGGAGAGCTTGCATTGCTGGAAGACCAGTAGACTATTATTGATTTATTTGTGGCGTGGGTGAAGTAATTTAATCAAATACAATGGATAGATGGATCAGAAGATGGAGTGTGGAAGAGTGTGAATGATGTTGCCGTGTAGATACTGTGGAATTGTATTAGTGACCGCTGCTTATTGTTTTTAtttgactttttattttatttaatttagggggtagatcagctttaatattgcaaatAGATTGTAGAttgttccatcaatgtaattgtatgcATCATTTCTAATCCCCACCCATATAtttgttttgtaaatatatatttttattttcccctaaccctaccacccctcccctaatttgagtaaactaatggacaacaacactttgGCTTTTTAAGGACACAGTGTATTTTACAATagttgtttttagtcccatccttcagctcccctcaacccatctctgaagaccatccattttttatttaattttaccatatttttaactgtgctgtttcacaaacgttctgaacctatatacattttac

Function

NR:

description
thyrotroph embryonic factor-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09058 TEF; thyrotrophic embryonic factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575992.2 False 1595 mRNA 0.46 5 21573035 21586408
XM_021575993.2 True 1703 mRNA 0.46 5 21575816 21586408

Neighbor

gene id symbol gene type direction distance location
LOC110499098 NA coding upstream 10462 21518345 ~ 21562573 (+)
LOC118941998 NA coding upstream 55770 21496394 ~ 21517265 (+)
LOC110499099 LOC106589529 coding upstream 131009 21437535 ~ 21442026 (+)
LOC110499100 LOC106589528 coding upstream 135633 21422168 ~ 21437402 (+)
LOC110499101 ku70 coding upstream 152425 21405522 ~ 21420610 (+)
LOC110499095 LOC106589533 coding downstream 8473 21594881 ~ 21614231 (+)
csdc2a LOC106589535 coding downstream 41497 21627905 ~ 21636035 (+)
si:ch73-139e5.4 LOC106589536 coding downstream 70527 21656935 ~ 21685353 (+)
cby1 cby1 coding downstream 124103 21710511 ~ 21721556 (+)
LOC110499089 LOC106589537 coding downstream 139140 21725548 ~ 21729360 (+)
G1673251 NA non-coding upstream 36317 21478632 ~ 21536718 (+)
G1673166 NA non-coding upstream 189426 21382739 ~ 21383609 (+)
G1673183 NA non-coding upstream 218258 21354563 ~ 21354777 (+)
G1673057 NA non-coding upstream 260934 21311742 ~ 21312101 (+)
G1673333 NA non-coding downstream 35043 21621451 ~ 21621681 (+)
G1673334 NA non-coding downstream 36800 21623208 ~ 21623435 (+)
G1673368 NA non-coding downstream 89617 21676025 ~ 21681986 (+)
G1673369 NA non-coding downstream 89906 21676314 ~ 21682360 (+)
G1673341 kcd17 non-coding downstream 114663 21701071 ~ 21701804 (+)
G1673231 LOC106589530 other upstream 122689 21444883 ~ 21450346 (+)
G1673204 NA other upstream 183257 21386329 ~ 21389778 (+)
G1673063 NA other upstream 255623 21316798 ~ 21317412 (+)
G1673044 NA other upstream 276181 21296372 ~ 21296854 (+)
tnrc6b LOC106589538 other downstream 226837 21806703 ~ 21848442 (+)
LOC110513322 rsl1d1 other downstream 350234 21936590 ~ 21959627 (+)
LOC110499192 LOC106589579 other downstream 1670396 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1993622 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 3496256 25082664 ~ 25083277 (+)

Expression


Co-expression Network