LOC110499095 (LOC106589533)


Basic Information

Item Value
gene id LOC110499095
gene name LOC106589533
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21594881 ~ 21614231 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575991.2
AAGGTATCGCCAGGAGCAGACACGCGACGTAGACGGCTACAAAACCTGACGTCACCTCTGCTCGACACATCTTTGTCAGTGAACAAAATGGCGACATACTGTCTCACCGTTGCCCGGCTGCAGCTTGCCCTGGGCCAGGGTGTGCGGCGCCTGCACGTGTCTGCAGCCTTCAATGCCAAGGCCAAAGTGTCAATGAGCCGCTTTGAGCCCAGCAACTTTGTCAACTATGAGAAGCTCAATGAGAATGTCAACATTGTGCGCAAGAGACTCAACCGTCCCCTCACCCTCTCAGAAAAGATTGTCTACGGCCATCTGGATGACCCTGTGGGGCAGGACATTGCCAGGGGCCGTACATACCTGCGTCTGCGACCGGACCGCGTGGCCATGCAGGACGCCACGGCCCAGATGGCCATGCTGCAGTTCATCAGCAGTGGCCTGCCCCAGGTGGCCGTGCCCTCCACCATCCACTGTGATCATCTGATCGAGGCCCAGATTGGAGGAGCCAAGGACTTGGCAAGGGCAAAGGATATTAATGCGGAGGTGTATAACTTCCTGGCCAGTGCTGGAGCTAAATATGGAGTGGGCTTCTGGAAACCAGGCTCTGGCATAATCCATCAGATCATCCTGGAGAACTATGCCTACCCAGGGGTATTGCTGATTggcacagactctcacacacccAATGGTGGCGGACTGGGCTCCATCTGCATTGGAGTGGGAGGGGCTGATGCTGTTGATGTCATGGCTGGCATCCCCTGGGAGCTCAAGTGTCCCAATGTTATTGGGGTGAAGCTGACAGGCAAGCTGTCAGGATGGACATCCCCCAAGGATGTGATCCTTAAGGTTGCTGGGATTCTGACCGTGAAGGGAGGTACTGGAGCCATTGTGGAGTACCACGGACCTGGGGTGGACTCCATCTCCTGCACagGAATGGCCACTATCTGCAACATGGGGGCTGAGATTGGAGCCACTACCTCTGTGTTCCCCTATAACCACCGCATGAAGACCTACCTGGAGAAGACTGGCCGTGGAGACATTGCTGCCCTGGCTGACGATTACGCTGACCTGTTGGTTCCTGACGCGGGCTGTGAGTATGACTCAATGGTCGAGATCAACCTAGATGAGCTGAAGCCCCACATCAACGGGCCCTTCACCCCTGACCTGGCCCACCCCATGGCAGACATTGGGGCCACGGCAGTGAAAAATGGCTGGCCCCTGCAGGTCAAAGTGGGTCTGATTGGCAGCTGCACCAACTCCAGTTATGAGGACATGGGCCGCTCTGCCTCCGTGGCCAAACAGGCCCTGGACAAAGGTCTGAAGTGCAAGGCTGCGTTCACCATCACCCCCGGGTCTGAACAGATTCGCGCCACAATCGAGCGAGATGGATATTCCAAGATCCTTGGTGATGTTGGTGGAATGGTCCTGGCCAATGCCTGTGGACCCTGCATTGGACAGTGGGACAGGCGTGATGTGAAGAAGGGAGAGAAGAACACCATCGTCACATCTTACAACAGGAACTTCACCGCCAGGAATGACGCCAACCCAGCCACACATGCCTTTGTCGCCTCCCCTGAGATCGTCACAGCCCTGGCCATCGCAGGAACCCTGGATTTCAACCCCGAGGTTGATTACCTTACGGCCGCCAATGGAGAAAAGTTCAAGCTAAAGCCCCCCAGTGCAGACGAGCTGCCCAAGTTGGACTTTGACCCCGGTCAGGACACCTACCAGCACCCCCCTGCCGAGGGTGGCTCAAAGCTGAGGGTGGACGTCAGCCCCACCAGCACCCGGCTGCAGCTGTTGGAGCCCTTTGACAAATGGGCCGGAGGTGACCTGGAGGACCTGCAAATCCTCATCAAGGTGAAGGGGAAATGCACCACAGACCACATCAGCGCCGCTGGTCCATGGCTCAAGTTCCGTGGTCACCTTGACAACATCTCCAACAACATGCTAATTGGAGCAGTCAACATCGAGAACGACGGCGTCAACAAGATCAAGAACCAGCTGACAGGAGAGTACGGTGGTGTGCCTGACGTCGCCCGTCATTACAAGGCCAACGGTCTGTCATGGGTGGTTGTGGGAGATGACAACTACGGTGAGGGATCCAGCAGAGAGCATGCAGCCCTGGAGCCCAGGCACCTGGGAGGAAGATGCATCATTGTCAAGAGCTTTGCCAGGATCCACGAGACAAATCTGAAGAAACAGGGAATGCTGCCCCTGACCTTCCAGAACCCCGCTGACTACGACAAGATCCGCCCAGACGACAAGATCTCCATCAAAGGACTTGCAACCTTCGCCCCAGGAAAGCCCCTGTCTACAGTAGTGAAGCACAGTGACGGCACCAAAGATGAGTTCCAGTTGAACCACACCTTCAACGAGACACAGATCGAATGGTTTCAGGCCGGCTCGGCCCTCAACAGAATGAAAGAGCTCCAGTAActtgagagagggaagaagagctacagagacagggggaggggttGAGAGGACAGGGGGACATGCTGTGTTTTTAAAGATATGGGATGTCTCAATATTCTTGAATggcttcctccctctccttatgTTTATCACTGATCTGTAAGGTAAAAGTACTTGTTAATGAGCTCTGTTTAACCAatcagtgatgagggagaggaggcgaCTTAAGAGTTTTGAGACTTGGTAAAGAATAAAAGCCACACCCCTCCAATATCACGATTCCAGTACAATCATCAACCCCTGCATGTGACATCCACTGCCTTGCACTGTATAGACAAGTCAAACACAAACCACAGAACTTTTCATATGTAAGAAACGCATCAAACTTTGCAGTACAGATAGGAGTGCATACACATAGATGGGTACTACTGTAGAGTTGTTTTAAGGTACTGTGAGTTGCTGTAGTAGACAGAGAATTAACTGTCAGGCATGAATGTTGTCTCGCAGATACTGTATACAAAGGGACACTTACCGTTAAGTGTCATATGTACACGCTCTACTTTTGAGCAGAACGGTAACCTAATACACTGCCAATCGCAGCTCCTCCTGTTATCAGTTCCAACCGATTGGTGAGGCTTGAAGTCTGTTTCAGTCAGTCCTGTATTCACTCACCTTGCCTCTGAGTTGCACCAGTGTAGCACTTTATCTGTTGCAGGCGGCACGGTCTATCTGCGTTAGTGATCGGGTGTCTGCTTTGTCCTTTCTGCTCTATCCACACGCCGTACGATGTGTTTTGTTAATTTTGTGGTATATTCTCCAAAATACAAAGAATAGAATACACATGCTGGGTAATACGAGGCAAGTTGATTTATCTATATGTGCATGTTACCTCTTTGTAACAACATCCCACCAccactgaataataataataataatacaacacAGTTCAAAGCTTCAAATATTTTAGtgattgtgttttttttctctctcaaagcTTGGATGTGCATTGACATGTTTAATGCGGTCTCCTCAGAACAGTGTTGATTGGACTACCAGATTCTTTCGCCCTGTCCTGTGTTTTTTTGCGCTCTTTTATCTAATCTTACATGTTAGTGCCCAGAGTTTGTCTGAGTCTGGTAACTTGGCCAGGAAAAAAATCCTTGTCTTTGACACCAGGTTTACTTCAGTGATAAAGACACCTAAAACACTCCCATTGCTTAGCAGTGTATGGGAACTCTCTCAAACATACTAGCTAACTCTGCCTAGAAACATATCCGTAAGGAATTACAAATGTATgaatttttctgtatttttataaAACGCATTTAAACACCAAATCCCAACTGCATTAAAGTTGAGTGATGAAGTGCAGCAGCTTTCCGAGTCTGCTGTGCAATGGGAGAAATGGTACCATGGCCTCAATATCTGTTCAATAAACACCCCCCCCAGACAGGTCATTGCTAGAAAGGATCctgcttttgtcaaattaacatcagatttgacttttcgtagcagATTAGAACATGCGCAGCAGATTCTGAGAAttaggttaggaaaagggttaaaAGGGTTAGTTAAAATGAAGGGGGAAAAATATACTTTTGATTTTAATTTGACcaaagctggatcccttctagcctTGACCCCCTAGACAGGAAACACTCATGCCAAACAATCTCAATCACTTGTACTATCATCACCAACCTCCTCCTGTCTACAGTATGGAAAGTGTTTGGATCCATGTGTATTTAAATGTCTTTCGGTGTTATTTTTTTCTCTATTGCAGAAATGAGTGCTATCCAGTTGCAATGTGTTGTAAAATAAACTGACATTTCAATGCCTATA

Function

NR:

description
aconitate hydratase, mitochondrial-like

GO: NA

KEGG:

id description
K01681 ACO, acnA; aconitate hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575991.2 True 4260 mRNA 0.50 18 21594881 21614231

Neighbor

gene id symbol gene type direction distance location
LOC110499096 LOC106589531 coding upstream 8473 21573035 ~ 21586408 (+)
LOC110499098 NA coding upstream 32308 21518345 ~ 21562573 (+)
LOC118941998 NA coding upstream 77616 21496394 ~ 21517265 (+)
LOC110499099 LOC106589529 coding upstream 152855 21437535 ~ 21442026 (+)
LOC110499100 LOC106589528 coding upstream 157479 21422168 ~ 21437402 (+)
csdc2a LOC106589535 coding downstream 13674 21627905 ~ 21636035 (+)
si:ch73-139e5.4 LOC106589536 coding downstream 42704 21656935 ~ 21685353 (+)
cby1 cby1 coding downstream 96280 21710511 ~ 21721556 (+)
LOC110499089 LOC106589537 coding downstream 111317 21725548 ~ 21729360 (+)
sh3bp1 LOC106589540 coding downstream 125729 21739960 ~ 21755576 (+)
G1673251 NA non-coding upstream 58163 21478632 ~ 21536718 (+)
G1673166 NA non-coding upstream 211272 21382739 ~ 21383609 (+)
G1673183 NA non-coding upstream 240104 21354563 ~ 21354777 (+)
G1673057 NA non-coding upstream 282780 21311742 ~ 21312101 (+)
G1673333 NA non-coding downstream 7220 21621451 ~ 21621681 (+)
G1673334 NA non-coding downstream 8977 21623208 ~ 21623435 (+)
G1673368 NA non-coding downstream 61794 21676025 ~ 21681986 (+)
G1673369 NA non-coding downstream 62083 21676314 ~ 21682360 (+)
G1673341 kcd17 non-coding downstream 86840 21701071 ~ 21701804 (+)
G1673231 LOC106589530 other upstream 144535 21444883 ~ 21450346 (+)
G1673204 NA other upstream 205103 21386329 ~ 21389778 (+)
G1673063 NA other upstream 277469 21316798 ~ 21317412 (+)
G1673044 NA other upstream 298027 21296372 ~ 21296854 (+)
tnrc6b LOC106589538 other downstream 199014 21806703 ~ 21848442 (+)
LOC110513322 rsl1d1 other downstream 322411 21936590 ~ 21959627 (+)
LOC110499192 LOC106589579 other downstream 1642573 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1965799 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 3468433 25082664 ~ 25083277 (+)

Expression


Co-expression Network