cby1 (cby1)


Basic Information

Item Value
gene id cby1
gene name cby1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21710511 ~ 21721556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575984.2
ATTATTACAAGGATCAAACCTAGACTTTGTCATATTATATAGAATCGAATTGTATGTAGTTAAAGTAAACAATCATTACATTGTAACATTATTTGATATCATCCAACTCAAATGCTGTGCTGCCATTTGCAGATTCTTCCATTATTACCCGGTTGGGGCAAAATGGATCTTGCGCAGTAACCTGCATGTGTGtaaaaaaacaggtaaaaataacCTAGCTGGGCGAAAAAGAGAAGGGAAGCCTCTGCTAACCAATGATAAGGAATAAGAGCTATCTATAACGCCGCTGATTAAGAAGATGCCGTTTTTTGGAAACACCTTCAGTCCAAAGAAAACCCCTCCTCGcaagtctgtttctctctccaatCTGCACACGTTGGATCGGTCTACGAGGGAAATAGAGTTGGGTCTTGAATATGGAGCCCCTGTAATGAACATCGGGGGGCAGAGCTTGAAATTTGAAGAGGGACAATGGATTGCAGAGTCTGGAGGGAATGCATCAGGGAAGGAGGTGCAGAGACTAAAAAAGAGGAACTTACAGCTTGAAGAGGAGAACAACCTACTGAGGCTGAAGATTGACCTCCTGTTGGACATGTTGTCAGAAACCACTGCAGAGTCTCACCTGATGGAGAAGGAACTGGAGGAGGTGAAAAATCACAGCCGAAGGAAGAAGTGATGAATAGAAAACTGAAGACGGGTTTCCCAGTGACACTTGAAAAGGAATTAAGGGGATAGATGAGGGATGGTGATGGATGGCAGTGTTAGTGACCAACTGTGCTGTAAAATTAGACTTTTATACATTATATACGTTATAGGATTTTAAATCGTTGAAGGTATGAGAGTTTAAATGTGCTCTATCCTTTTATAAAAATGAATTTCTTTGATTCATTAATTTTGTAAGCATTATCGTATCAGTGCTGAACTATTTTAGAATACAATGATTTATATTCaacgtcctgtgtgtgtgtgtgtatgggtttgGCAGCTGTGTGTATTAGAATATTTGTTTTCATATCCTTTCTACTTTATTAAAAGGTTTTAACTACA
>XM_021575985.2
gggaccggccagttagagggagatgagatgtgtgtttatataaggaagagggggtcagtcttatggctgggtgtatgtgttcttacgacggaatgtctttgtttatatgagctatgtgtataaatatttatataacaaacaTTAAACTTCCACAAACTCTGTTTGTCTCACTTCAGAGCTATCTATAACGCCGCTGATTAAGAAGATGCCGTTTTTTGGAAACACCTTCAGTCCAAAGAAAACCCCTCCTCGcaagtctgtttctctctccaatCTGCACACGTTGGATCGGTCTACGAGGGAAATAGAGTTGGGTCTTGAATATGGAGCCCCTGTAATGAACATCGGGGGGCAGAGCTTGAAATTTGAAGAGGGACAATGGATTGCAGAGTCTGGAGGGAATGCATCAGGGAAGGAGGTGCAGAGACTAAAAAAGAGGAACTTACAGCTTGAAGAGGAGAACAACCTACTGAGGCTGAAGATTGACCTCCTGTTGGACATGGGACCgaacattggcgagtaatataaTCGGAAAcggtggatggtgtgcatgcctcttgagtcggactagaagtccagtCCGAATACCTTTTCACCGCCGGCGACGTCTTGGAGCAGCTAAAGGGATAAGTTCAATTGGGGGGTATGAACAAAGAATCcaatttgggaaagtcgtatttctGGTcggaatgctggtgagttaccgcctcTCTAATATCCAAAAGTTCTTTCCAGCTGTATTTAATAACGCAAAAAAACATTCTGGGCTAATTATGtaggaatatatatataattaaagtCTACTGAAGTGAGACTTTGTTGGCTTTTttggctatttacattgttttgttcacaagctagg
>XM_036955972.1
gggaccggccagttagagggagatgagatgtgtgtttatataaggaagagggggtcagtcttatggctgggtgtatgtgttcttacgacggaatgtctttgtttatatgagctatgtgtataaatatttatataacaaacaTTAAACTTCCACAAACTCTGTTTGTCTCACTTCAGAGCTATCTATAACGCCGCTGATTAAGAAGATGCCGTTTTTTGGAAACACCTTCAGTCCAAAGAAAACCCCTCCTCGcaagtctgtttctctctccaatCTGCACACGTTGGATCGGTCTACGAGGGAAATAGAGTTGGGTCTTGAATATGGAGCCCCTGTAATGAACATCGGGGGGCAGAGCTTGAAATTTGAAGAGGGACAATGGATTGCAGAGTCTGGAGGGAATGCATCAGGGAAGGAGGTGCAGAGACTAAAAAAGAGGAACTTACAGCTTGAAGAGGAGAACAACCTACTGAGGCTGAAGATTGACCTCCTGTTGGACATGTTGTCAGAAACCACTGCAGAGTCTCACCTGATGGAGAAGGAACTGGAGGAGGTGAAAAATCACAGCCGAAGGAAGAAGTGATGAATAGAAAACTGAAGACGGGTTTCCCAGTGACACTTGAAAAGGAATTAAGGGGATAGATGAGGGATGGTGATGGATGGCAGTGTTAGTGACCAACTGTGCTGTAAAATTAGACTTTTATACATTATATACGTTATAGGATTTTAAATCGTTGAAGGTATGAGAGTTTAAATGTGCTCTATCCTTTTATAAAAATGAATTTCTTTGATTCATTAATTTTGTAAGCATTATCGTATCAGTGCTGAACTATTTTAGAATACAATGATTTATATTCaacgtcctgtgtgtgtgtgtgtatgggtttgGCAGCTGTGTGTATTAGAATATTTGTTTTCATATCCTTTCTACTTTATTAAAAGGTTTTAACTACA
>XM_036955974.1
tttatataaggaagaggggAGCTATCTATAACGCCGCTGATTAAGAAGATGCCGTTTTTTGGAAACACCTTCAGTCCAAAGAAAACCCCTCCTCGcaagtctgtttctctctccaatCTGCACACGTTGGATCGGTCTACGAGGGAAATAGAGTTGGGTCTTGAATATGGAGCCCCTGTAATGAACATCGGGGGGCAGAGCTTGAAATTTGAAGAGGGACAATGGATTGCAGAGTCTGGAGGGAATGCATCAGGGAAGGAGGTGCAGAGACTAAAAAAGAGGAACTTACAGCTTGAAGAGGAGAACAACCTACTGAGGCTGAAGATTGACCTCCTGTTGGACATGTTGTCAGAAACCACTGCAGAGTCTCACCTGATGGAGAAGGAACTGGAGGAGGTGAAAAATCACAGCCGAAGGAAGAAGTGATGAATAGAAAACTGAAGACGGGTTTCCCAGTGACACTTGAAAAGGAATTAAGGGGATAGATGAGGGATGGTGATGGATGGCAGTGTTAGTGACCAACTGTGCTGTAAAATTAGACTTTTATACATTATATACGTTATAGGATTTTAAATCGTTGAAGGTATGAGAGTTTAAATGTGCTCTATCCTTTTATAAAAATGAATTTCTTTGATTCATTAATTTTGTAAGCATTATCGTATCAGTGCTGAACTATTTTAGAATACAATGATTTATATTCaacgtcctgtgtgtgtgtgtgtatgggtttgGCAGCTGTGTGTATTAGAATATTTGTTTTCATATCCTTTCTACTTTATTAAAAGGTTTTAACTACA
>XM_036955973.1
gtcagtcttatggctgggtAGCTATCTATAACGCCGCTGATTAAGAAGATGCCGTTTTTTGGAAACACCTTCAGTCCAAAGAAAACCCCTCCTCGcaagtctgtttctctctccaatCTGCACACGTTGGATCGGTCTACGAGGGAAATAGAGTTGGGTCTTGAATATGGAGCCCCTGTAATGAACATCGGGGGGCAGAGCTTGAAATTTGAAGAGGGACAATGGATTGCAGAGTCTGGAGGGAATGCATCAGGGAAGGAGGTGCAGAGACTAAAAAAGAGGAACTTACAGCTTGAAGAGGAGAACAACCTACTGAGGCTGAAGATTGACCTCCTGTTGGACATGTTGTCAGAAACCACTGCAGAGTCTCACCTGATGGAGAAGGAACTGGAGGAGGTGAAAAATCACAGCCGAAGGAAGAAGTGATGAATAGAAAACTGAAGACGGGTTTCCCAGTGACACTTGAAAAGGAATTAAGGGGATAGATGAGGGATGGTGATGGATGGCAGTGTTAGTGACCAACTGTGCTGTAAAATTAGACTTTTATACATTATATACGTTATAGGATTTTAAATCGTTGAAGGTATGAGAGTTTAAATGTGCTCTATCCTTTTATAAAAATGAATTTCTTTGATTCATTAATTTTGTAAGCATTATCGTATCAGTGCTGAACTATTTTAGAATACAATGATTTATATTCaacgtcctgtgtgtgtgtgtgtatgggtttgGCAGCTGTGTGTATTAGAATATTTGTTTTCATATCCTTTCTACTTTATTAAAAGGTTTTAACTACA

Function

symbol description
cby1 Orthologous to human CBY1 (chibby family member 1, beta catenin antagonist).

NR:

description
protein chibby homolog 1

GO: NA

KEGG:

id description
K23402 CBY1; protein chibby 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575984.2 False 1047 mRNA 0.39 5 21710511 21721556
XM_021575985.2 False 862 mRNA 0.43 4 21711292 21713888
XM_036955972.1 False 954 mRNA 0.40 4 21711292 21721556
XM_036955974.1 False 797 mRNA 0.40 5 21711326 21721556
XM_036955973.1 True 797 mRNA 0.41 5 21711345 21721556

Neighbor

gene id symbol gene type direction distance location
si:ch73-139e5.4 LOC106589536 coding upstream 25158 21656935 ~ 21685353 (+)
csdc2a LOC106589535 coding upstream 74476 21627905 ~ 21636035 (+)
LOC110499095 LOC106589533 coding upstream 96280 21594881 ~ 21614231 (+)
LOC110499096 LOC106589531 coding upstream 124103 21573035 ~ 21586408 (+)
LOC110499098 NA coding upstream 147938 21518345 ~ 21562573 (+)
LOC110499089 LOC106589537 coding downstream 3992 21725548 ~ 21729360 (+)
sh3bp1 LOC106589540 coding downstream 18404 21739960 ~ 21755576 (+)
tnrc6b LOC106589538 coding downstream 85147 21806703 ~ 21848442 (+)
LOC110499080 LOC106609470 coding downstream 146278 21867834 ~ 21876459 (+)
tmem184ba LOC106609488 coding downstream 155319 21876875 ~ 21894557 (+)
G1673341 kcd17 non-coding upstream 8707 21701071 ~ 21701804 (+)
G1673369 NA non-coding upstream 28151 21676314 ~ 21682360 (+)
G1673368 NA non-coding upstream 28525 21676025 ~ 21681986 (+)
G1673334 NA non-coding upstream 87076 21623208 ~ 21623435 (+)
G1673333 NA non-coding upstream 88830 21621451 ~ 21621681 (+)
G1673434 NA non-coding downstream 83000 21804556 ~ 21804932 (+)
G1673748 NA non-coding downstream 131256 21852812 ~ 21853020 (+)
G1673749 NA non-coding downstream 131524 21853080 ~ 21853290 (+)
G1673751 NA non-coding downstream 132128 21853684 ~ 21853930 (+)
G1673231 LOC106589530 other upstream 260165 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 273130 21422168 ~ 21437402 (+)
G1673204 NA other upstream 320733 21386329 ~ 21389778 (+)
G1673063 NA other upstream 393099 21316798 ~ 21317412 (+)
G1673044 NA other upstream 413657 21296372 ~ 21296854 (+)
LOC110513322 rsl1d1 other downstream 215086 21936590 ~ 21959627 (+)
LOC110499192 LOC106589579 other downstream 1535248 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1858474 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 3361108 25082664 ~ 25083277 (+)

Expression


Co-expression Network