LOC110499089 (LOC106589537)


Basic Information

Item Value
gene id LOC110499089
gene name LOC106589537
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21725548 ~ 21729360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575983.2
GCTGAATATTGCGTCATTGTACTTTTAACGCCTTCCACTCTTGTTGCTCTCAGGAAGCGGGTAAAAGATAGTCTAGCTGGAAGAGGACTGTGTCGCGAAGGCCTTTTCTTTAGAAAATAAACTCTATGTTTAACTGGAAACAGTGAACTTATTTATTTGCGGTCTTAGTCGTTCAAGTTCCTATACCAAATATGCCAAGAGGCGgtAAAAAAGGTCACAAGGGCCGGGGAAAGCAGTTCAGCAACCCTGAAGAGATTGATAGACAGATGAAAGCACAGAGAGAGCTGGAGGCGAACGGTGGagtagagaaggaggaggagaagtcaTCAGGATCTGATGACAGCAGCAGTGAAGAGGAGGACGTTAATAAGAAGAAGAGTGGAGTGGAAGGATTGATTGAGATTGAGAATCCCAACCGTATATCCCAGAAAAGTAAGAAGGTGACCGAGCTTGATGTCAACGCACCCAAAGAGCTGTCACGCCGAGAGAGggaggagatagagaagcAGAAAGCTAAGGAACGCTACATGAAGCTTCACCTAGAGGGGAAGACAGACCAGGCACGGGCCGACCTCGCCAGGCTGGCCATCATCAAGAAGCAGAGAGAGGACGCACAAAAGAAGAGGGACGGCCTCAAAAAAGAAAAAGAAGCTGAAGACTCCAAGTCCAAGCGTTAGGCCTGTCTCCCGAGGACTTGGCCTGGAAAACGATctggggaggatggagagacaaGAAGACTGTAGGAGGGGATCGATATGAGGGTTGTCAGCTCAGGGGTAACATGTGCTTGGGCTCCTGCCCTTCATCTCCGATGAGGGAAGGGTGTGAGCCGGGCGTTATGGAGGAGACGGAAAAGGAGCACTTCAGGTTTGCCTGTTTAGTTCCTCCGTATTCTGTGAGGTCACAGCGGCAGGCGTTCTAGTGTCTTCACTCCTCCCCTGTGTTCTAATTCTAAAGCTGCTGGAGATCATTCTTTGATTATATTTTTTGCATTTTAACACTGTTTACTTATGAATGGGAAGTGTTGTGGGAGGATGAGTAGGGGTTTGTATACTTTCATCTGACCTGTTATTAAGGTGAatcaggtggtggtggttgggacAGAGGAACATGTTATACAGGAAATCTTTATGTATTCTTTATTATGTTCTGTTTCATCTCTACCAGTTGTCTTCATTCACAACCTGACAGTTCAAAGTCATTTGCCTCCAAAGGAAAGAAGAGGTCCCATAGGCAGAAGTGTCTCAGACAGAACATGTATAAAGGAATGTCAGCCTTTATGCAACTTCTATTTAGGTGTTGGAGTTTTTACCCTTTATTCTGTTGGTGTTTCTGCCCAGACATGTTTAGCTCGTTTCAGCTGCCAGCTGGCTCTAATTTCTGATTGAACCACCTTGCAGCGTAAAGTCTTGTAGTCAAAAAGGAGCTCTGTTGGCATAAAAATTCATTGTTAATATTTCATAATTACCTTGAAAAAAGCGTTGCTGGGGCCTCATACTGTAAGTCTCTTTTTCAGTGCTATGGTTTTCTCTTCTATAATTTTTTTGCCTTTTGACAGTTCACACAGGGCAATGTCAATGGTCGCGTTCCCCTGCTCAGAAGTTGGATGCATCAACAATGGTTGCGTGCATCCTCATCGACTGGTCAGgcaccagattgctataacataatGTGGTTAGCTGATGGGTAAAATACCTTTCTGGGCATTGTAAGATTTGGCATGCATAAGCAACGGCTGGGCAGAGGAACGCGCCCACTCTATTAGTCATAAGGATGCTATGCTATAGTGTGATGGTTGGAACCTGAGATGCCTTTTAACAGGAAAGCAATATTCTATGAATGGAGGTGGCTGAAACTCATTTCTCTCttgaaaacatacagtatatacaaagtGTTTTAATGTTTATAATAATGACTCTCCAGGATTGGTCAACTGTTTGATTTTTGTCTTTGAGTTCATTTGTTGTAtagaaataaatacattaatagATAAATTAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575983.2 True 1998 mRNA 0.44 6 21725548 21729360

Neighbor

gene id symbol gene type direction distance location
cby1 cby1 coding upstream 3992 21710511 ~ 21721556 (+)
si:ch73-139e5.4 LOC106589536 coding upstream 40195 21656935 ~ 21685353 (+)
csdc2a LOC106589535 coding upstream 89513 21627905 ~ 21636035 (+)
LOC110499095 LOC106589533 coding upstream 111317 21594881 ~ 21614231 (+)
LOC110499096 LOC106589531 coding upstream 139140 21573035 ~ 21586408 (+)
sh3bp1 LOC106589540 coding downstream 10600 21739960 ~ 21755576 (+)
tnrc6b LOC106589538 coding downstream 77343 21806703 ~ 21848442 (+)
LOC110499080 LOC106609470 coding downstream 138474 21867834 ~ 21876459 (+)
tmem184ba LOC106609488 coding downstream 147515 21876875 ~ 21894557 (+)
tomm22 LOC106589546 coding downstream 173245 21902605 ~ 21907221 (+)
G1673341 kcd17 non-coding upstream 23744 21701071 ~ 21701804 (+)
G1673369 NA non-coding upstream 43188 21676314 ~ 21682360 (+)
G1673368 NA non-coding upstream 43562 21676025 ~ 21681986 (+)
G1673334 NA non-coding upstream 102113 21623208 ~ 21623435 (+)
G1673333 NA non-coding upstream 103867 21621451 ~ 21621681 (+)
G1673434 NA non-coding downstream 75196 21804556 ~ 21804932 (+)
G1673748 NA non-coding downstream 123452 21852812 ~ 21853020 (+)
G1673749 NA non-coding downstream 123720 21853080 ~ 21853290 (+)
G1673751 NA non-coding downstream 124324 21853684 ~ 21853930 (+)
G1673231 LOC106589530 other upstream 275202 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 288167 21422168 ~ 21437402 (+)
G1673204 NA other upstream 335770 21386329 ~ 21389778 (+)
G1673063 NA other upstream 408136 21316798 ~ 21317412 (+)
G1673044 NA other upstream 428694 21296372 ~ 21296854 (+)
LOC110513322 rsl1d1 other downstream 207282 21936590 ~ 21959627 (+)
LOC110499192 LOC106589579 other downstream 1527444 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1850670 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 3353304 25082664 ~ 25083277 (+)

Expression


Co-expression Network