sh3bp1 (LOC106589540)


Basic Information

Item Value
gene id sh3bp1
gene name LOC106589540
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21739960 ~ 21755576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575982.2
CTTCTCTTCGAGCTCTGTGTGACTGAGTGGCGGTTGAACACAGTCACAGAGCACATTTTCAAAACAAGAACGAATACTGCTGGATGACAGAACATCACACCAACAACACACACTGAAGAAAACCACTTGCAGTGGTGTCTGCTCAACGAAATAATACAGACACTGACTTGGCAACACATGACTGAGGACCTGGCTGGAGTCAAGACAGAGGGATAATTTGTAAGAGGCGGGCTGACTCCTATGCAACCATGCTGAAATCTTTCAACCTCTTGAAGCAGCTTGGCTCTGTGGGGAAGTCACAGGATGCCACAGATCTTCTCACAGAAGATCTGGTTATGGTGGAGCAGCGGGTGGAGCCAGCCAAGAAGGCAGCACAGGTTATTCACAAGAAGCTGCTGGGTTGTCTGCAGAGTCAACTAGGGCTGGACACAGAGAGAAGAATGaaaAAACTCCCTCTCATGCTGCTCTCTGTTAGCATGGCTGAGAGCTTTAAAGACTTTGATCCAGACTCTTCTATCAGGAAAGTATTGGAGATGTGTTGCTTCATGGAGAGTCATCTGGCCGCAACACTGTCTGACTTTGAGCTGAAGCTGGAGAAGGAGGTTTTGGAGCCTCTCAATAAACTCAGTGAGGAAGACCTTCCAGAGATTCTCAAAAACAAGAAGCAGTTTGCCAAACTCACAATGGACTGGCACAATGCACGCAACAAGTCCCAGGCTAGTACGGGACCTCAGGCAAAGCAGGATGGGctgaaagaggaggtggaggaggcctGGAGGAAACTGGAGAGCATCAAGGACCAATACTCTGCAGATCTGTATCACTTTGCCACTAAAGAAGATGACTATGCCAACTACTTCATTCGTCTGCTGGAACTACAAGCAGAACATCATAAGAATTCCCATGACTTCCTCGAACGAAACATCAGTGAGCTGAAAGACAGTCAAACAGACTCCCAGGAGAATAACTATAAGGGGAAGGTTTACGGGGAGCCCCTGCTGACTCATCTGTACAACAGCGGTAGGGAGATCGCTGTTCCCATCCAGGAGTGTGTTCACATGCTGCTGCACACCGGcatgagagaggagGGTCTGTTTCGTCTGGCAGCAGCAGCCTCGGTAGTGAAGAGACTGAAGAGCAGTCTGGATGGAGGGGTCGTGAACCACAGTGAATTCACTGACCCTCATGCAGTTGCAGGGGCTTTGAAAAGCTACCTGAGAGAGCTGCCTGAACCACTCATGACCTTTGAACTCTACAATGATTGGTTTCAAGCAGCAGGGGAGAAAGAATTGACAGACAAACTTGAGCAGTTTAAAATTGTGCTGAAGAAGTTACCATCAGAAAACTACAACAACCTCCGgTACCTGGTACAGTTCCTGTCGTGCCTGTCAGAGCAGCAGTCGGTTAACAGGATGAGTCCCAGTAACATTGCCATAGTACTGGGTCCCAACCTGCTGTGGCCTCGCATTGAGGGggAGGCAGCGCTGTTGGACATGGCATCTGCCTCCTCCGTCCAGGTGGTGGCGGTGGTTGAGCCTCTCATACAACACTCCAGCAGCCTGTTTCATGAAGAGGTGGACTTTGAGATTCCTGAGTTTCCTGGGGTCCCAGATTTGAAAATGTTAGAACCTCAAACTTCAGAGTCGGGGAAAGAGAACCTTGCCAGAAtgacctcctcctcttcatcatgcgcttcctcttcctcttctcatgCTTCTCTCTGTAAAACAATCAGCTCAGCATCTCAGGACAGTGGAGGTTTTTTCATCATTAAGTCAGGCTCCATTGGTCGTAGAACCACCACCTGGGGGAACCCTGCCTCAGACCCACCATGCTCAACCCCACTTAACCGTACCCCAGTCCATACCCAGAGCCCGTCCCCTGTCCCAAGCCCGACACTGGTCCACAACCCATCCCCACTACCCAGCCCCAAACTGGCACCTGGCCCAACCCTGGTTCCCTCCCCACCACCAGTGTCTGTCTGCAGTCCGACCCAGAAGCAGAGCCCTGAATCGGGCTCACTAGAACCCATCCTAGAGGCCCCACCGGACTCCCCCAGAGCTACACTGAAGATCACCTCACCATACAAACCGAGAAAATCCTTCCTTCAACACATGCCGCCCATCCAGAGTAAAGAGCAGGTGGCCGTTACATACTCCAAACCCAGGGCCCCAGCACCTCTAGCACCAGCAGAGACACCCAAAACCCAGCTACAACCTGCACCCAAGCCCCTTGCTCCAGTCCTGAAGAAGACCCTAAGCAAAAAGGGTGCAATTAGGCCACCCCAAATCCCACCTCCCAAGCCCCCAGTACTGGAAAGCAAACAGGTGACCTCTATAGCGCAGTGAGGGGGTAgagatacactatatactgtatacaaaagtatgtgaaccccttcaaattagtggatttggatatttcagccacacccatttgtttatgtgtaactctgtgttgtttttgttgcactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaatcaaataaaaatactgACAGGGTGTATACAATcaggcacacagccatgcaatctccattgtcaaacattgtcagtaaaatggccttactgaagagctcagtgactttcaacatggcctCGGATTCCACCTTTTCAACAAgccagttcatcaaatttctgccctgctagagctgcccggtcaactgtaagtgatgttattgcgaagtggaaacgtctaggagcaacaacggctcagccacgaattggtaggccacacaagctcacagaatgtgaCCGCTGAGTGCGGAAGCACGTAAGGCGtcaaaatcgtctgtccttggttgcaacactcactacagagttacaaactgcctctggaagcaacgtcagcacaataactgattgtcgggagcttcatgaaatgggtttcaatggccgagcagcca

Function

NR:

description
SH3 domain-binding protein 1-like

GO: NA

KEGG:

id description
K20652 SH3BP1, ARHGAP43; SH3-domain binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575982.2 True 2976 mRNA 0.50 18 21739960 21755576

Neighbor

gene id symbol gene type direction distance location
LOC110499089 LOC106589537 coding upstream 10600 21725548 ~ 21729360 (+)
cby1 cby1 coding upstream 18404 21710511 ~ 21721556 (+)
si:ch73-139e5.4 LOC106589536 coding upstream 54607 21656935 ~ 21685353 (+)
csdc2a LOC106589535 coding upstream 103925 21627905 ~ 21636035 (+)
LOC110499095 LOC106589533 coding upstream 125729 21594881 ~ 21614231 (+)
tnrc6b LOC106589538 coding downstream 51127 21806703 ~ 21848442 (+)
LOC110499080 LOC106609470 coding downstream 112258 21867834 ~ 21876459 (+)
tmem184ba LOC106609488 coding downstream 121299 21876875 ~ 21894557 (+)
tomm22 LOC106589546 coding downstream 147029 21902605 ~ 21907221 (+)
dmc1 LOC106609504 coding downstream 152041 21907617 ~ 21919609 (+)
G1673341 kcd17 non-coding upstream 38156 21701071 ~ 21701804 (+)
G1673369 NA non-coding upstream 57600 21676314 ~ 21682360 (+)
G1673368 NA non-coding upstream 57974 21676025 ~ 21681986 (+)
G1673334 NA non-coding upstream 116525 21623208 ~ 21623435 (+)
G1673333 NA non-coding upstream 118279 21621451 ~ 21621681 (+)
G1673434 NA non-coding downstream 48980 21804556 ~ 21804932 (+)
G1673748 NA non-coding downstream 97236 21852812 ~ 21853020 (+)
G1673749 NA non-coding downstream 97504 21853080 ~ 21853290 (+)
G1673751 NA non-coding downstream 98108 21853684 ~ 21853930 (+)
G1673231 LOC106589530 other upstream 289614 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 302579 21422168 ~ 21437402 (+)
G1673204 NA other upstream 350182 21386329 ~ 21389778 (+)
G1673063 NA other upstream 422548 21316798 ~ 21317412 (+)
G1673044 NA other upstream 443106 21296372 ~ 21296854 (+)
LOC110513322 rsl1d1 other downstream 181066 21936590 ~ 21959627 (+)
LOC110499192 LOC106589579 other downstream 1501228 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1824454 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 3327088 25082664 ~ 25083277 (+)

Expression


Co-expression Network