maff (LOC106589545)


Basic Information

Item Value
gene id maff
gene name LOC106589545
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21896705 ~ 21902217 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575974.2
GGCGCACCTAGCTCGCCAGCTCCCTTCCGTATAAGGAAATGGGTGGATTGTTATTGCGAATTAAATGTTTAGGTAGGCAGGCATCTTTAATTCCGGTAATAACGAAAGTTGGTTTATGAAACAACAATATATTTTGAACGATCGTCTGTAAATCAGTGTTTACTGGTGTCGGAGACAGAGGATAAAGCCAGACCATGACATCAGAAAGAAGCAGCAAAGCCCTGAAGgTGAAGCGGGAGTGTGGTGAGAATGTTCCGGTGTTGTCGGACAGCGAGCTCATGTCCTTGTCTGTACGGGAGCTCAACCTCCACCTACGGGGTCTATCCCGCGAGGAGGTCCAGAAGCTCAAGCAGCGCCGGCGCACCCTGAAGAACCGTGGCTACGCGGCCAGCTGCCGGGTGAAGCGCGTGTCCCAGCGTGAGGCCCTGGAGCAGCAGAAAAAGGAGCtccagagggaggtggagaggctgGGTGTGGAGAACGCTGGGATGAGGAGAGAGCTGGAGGGCCTGGGGGCCAGGCTGGCTGCCCTGCAGAGGTTCGCCCGTGGGTTAGAGTCTGGAGGAGGTAACATCCTGGCTACGGCCCCACGACTGAACACAGCCTCTGTCATTACCATAGTGAAGACCCCGCCACAGGCCCACGTCCAAAGAGAGCAGGGGGGCTCCTAGGAGGAACCGATCGGGCTGGGGAGGGACTCATGCACGTACATACTCTcatatagacagacacacacacacacacacaggcagacacatgGAGAGCGCAGGAGGATTGGAGGAACACAGACAAATAGGCACTTATGAAACTCACGCGCTTAGGATGATACACATACACTCGcacaccagggtttccgttaggaaaatgtgACGCCAGACCTTTGAACGGCAGTGTTTTAATTTACCGGACATTTAAGATGTTTACCGGACTCATATGTATTGGGTGTGTAACCTGATTAgtgcgtccacccacggtgctcagaatgacaaatCACATTTCGATTATGGTTATTCTTCTTAACGGGACATGGAACTCGAGGGTGCAACCATGTGAATACTTCTTACCGAATTCCAATGCGCaatttgaagatgttagaataactgtccacatttacttttcctcagccaacaagatgagtaatgAACATAGTCTATTCCAAACAGACTGGAACAGTTGTgggacgatagatcccaaattcatatAACCAGTAGGCCTAGTTTACATCCCAATTTTTAAAGCAATGAGGCTCATGCAACAGATCTGAAAGTTTAACTTAAAATGTTCATAAACaaatttcttcacattataagcacagAAATTCCACACAAGGCAGTAGGCTATGTGCGAATATTCGTTCCATAATACAATTGTTAGGAAAAAATAGTTGTCAAAAGCACACCACACATGCGAGCGGTTTCATGAGACAGAGTTGAAAATATCTGTTAGAAATTTAGAAAGAGTGGACCTCTAAAggtgcaacaactagcatgggctgcttatatgactaggattgtgcctttcggctactggacaatgaaagaagGTTGATCTGAAAACCAGTAGAACATGAGAAATAGGCTACTGGTTTCAATAGAATATGGAAGCCGTTAGAAAATAATTGCCTGCACGTTTGGTTggattttggctaggctactttgaagcaaggtaagacatgcctcataatatgtagtTAAATGTTccggtttcaaacaattaagtatatgttttcaaaatacaTACCTGCCTCCtgctcattgcaaagtggtgtgttgACACGCTGAAGCCTGCCTAGTTGCCTATGCACTTGAATGGCGAATGGGAAGTGCGCTTCAATTAACAGTtgataaataaaaatagtagctCTTTTTAATCGTGACCATCAAAACTGTTTTTAACACAAGATTGCATATAGAATTGTTGTGCAGTGATTGGGCTTATAGTAGCACGTTTCACTCCAGCAGCAACAAACAAGCTGTTTGATGAGCTGTAGAAGCAGCTCTTGCGCTACATCGACTGGTATTTCAATCAATAAATAGGCTAAAATGCATTTTCACAATGCAATTTTCCTTCTTCTCCAGGACAATAGGCCGGCGGCAATTTTAGTTATCGGCCAAAAGCCGGCTATTaccggctaacggaaaccctgtcacaaacacacacacacaggtaaggtGTTCAGTCAGTGACAAATACTCACTCTAAACCCAGCCATCACACATACAGACTCATACAGATGTGCAGTTGAGGAAACATGACTGCTGACGAGTCCGGCTGAGGCACGACAGGCGTGCAAAACAGGGACATAGACAACACCCCTCGACAAAGCCAGTCTTGCTGCTGGTGCTCTCTGATACTGCTACTCAACAGGCTGAGCCGGCTAGCGCTCTGCCTTCTAGCATGGCATCTAGCCCCGCTACACAATGTCTGGGTTAATCAGACTCTTCCGCAGCTTCTTCCAATGCAAGCTTTGCGTTTTAAACGGCATCACAATTGACATCTGTACATGTCTTGGAGTGTTGTTCATCTGTACTCTTGTGTGTCGATACTATTGTGCTTCACTGTGTTGCCGTTTGTAGTGGCTACATGGGTGTATTTCAACTGCACAGTGCACATTTTGGTTTGTTATAAACGGCTTTGGTTGTAGTTGGTCATTGCTGGAAACAGTTGAAAAATCCACATCTCGTAGAATACTATGTCAATGCAAAAATCTATTGATACATTCCTTTATATTATTTTGTAATGTTTATACAAGAGACAAATGTTTGAGCGAACATTTATTCAGAGGTAttctattttatttgtatttaaagaATAGATATTACAAAAGCTAATGAGTGCTGTGGTGTAATGTATGTTTCAAATACCTGCGTATGACTAGTTTGGGGAAATTCTCACGTCTAATTGTTGTACTGGGTGTGTGACGATTATTTGTGTAATGTTTAACTGTCGTAATGAGCTGTTTAGATATGCTAAAAGCCGATGGTCATGTTGCTGTAAGATGATTTTAGTATGCGTGTACACCATATTTGTACTAATTTCATAGTGAGTCGAGTGGCTTGTTGTAGGGATATTATTTTTCTATCAAGTACCAAGGTGATGATACGTATTGTTATTTATGATACATTTTATTTCACGTTTGTTTTCTGAAATGGCTCGAGAGGGAGAGTAACACTGTAAGGAGAAAGAACGAAGGAAAAGAATGATAAAGGAATAAAAGAATGAGGCAGAGATGAAAAAGAAAGGGATAACAGGATATGAAGGAAAGATGTGGTGGTAGAAGAGGATTTGGGAGGTGAatgaggaaggagaagaggaccgaTATGAGGTGGTGCTTAATTCAATTGAAAACCTTGTAACATCCATGATTTATCAATAAACCCCTGCTGACTCTTATTAGACTGGGGTTGACTTAATGTTCGGAAAGTAATAGCAATATGATTTAAATTGTCAATAGTGACATTGTGTTGATTACTTCTGTAAGATATATTTAGCTATCTGCTCAATATCAATGTCGCATAGCATTTATCctcagtaatatctaatgtctcatCTAAGATTATTGTCAAATTGTGCTGGATGTTTTGTTATACCGCAAAACAAAAATGGTCTTTGTatttattacatgtattttttctaTGGTGAAAATTAAGTACATTGTCTATTTTATATATTAATAATTGAAATAAATGTTGTATATATTGTACATAAAA
>XM_021575973.2
TTCAAAATCAATAAGGTTAGGAAAGGAGAGGCAGGTCTTCATCATGGAAAAGTTTGGGACGCAGGGAATCCTTATTGTTTACATCCTTCCATCTCGTACGCTGGGGGCGGGCGGATCCACCCTCATTCTTTAGAGTTCACGTCATTGTAACGGTGTTTTTTGTGAATGAAAGAATCCAACCCCACAGAACAGAGTAATTCCGGGAAAAGGCGAACTGACATTTTGTCGCTTGACTCGCTTCGACTTGAACACAGTATTTGACGTTTCCCCGTGTTTTAAAAACATTTGTTTATACAATTGTGTTGACAACTGAAGGACTGGCAGCTGGTACTCTCCAACGACACAGCCAAGGACAAATCGTCTGTAAATCAGTGTTTACTGGTGTCGGAGACAGAGGATAAAGCCAGACCATGACATCAGAAAGAAGCAGCAAAGCCCTGAAGgTGAAGCGGGAGTGTGGTGAGAATGTTCCGGTGTTGTCGGACAGCGAGCTCATGTCCTTGTCTGTACGGGAGCTCAACCTCCACCTACGGGGTCTATCCCGCGAGGAGGTCCAGAAGCTCAAGCAGCGCCGGCGCACCCTGAAGAACCGTGGCTACGCGGCCAGCTGCCGGGTGAAGCGCGTGTCCCAGCGTGAGGCCCTGGAGCAGCAGAAAAAGGAGCtccagagggaggtggagaggctgGGTGTGGAGAACGCTGGGATGAGGAGAGAGCTGGAGGGCCTGGGGGCCAGGCTGGCTGCCCTGCAGAGGTTCGCCCGTGGGTTAGAGTCTGGAGGAGGTAACATCCTGGCTACGGCCCCACGACTGAACACAGCCTCTGTCATTACCATAGTGAAGACCCCGCCACAGGCCCACGTCCAAAGAGAGCAGGGGGGCTCCTAGGAGGAACCGATCGGGCTGGGGAGGGACTCATGCACGTACATACTCTcatatagacagacacacacacacacacacaggcagacacatgGAGAGCGCAGGAGGATTGGAGGAACACAGACAAATAGGCACTTATGAAACTCACGCGCTTAGGATGATACACATACACTCGcacaccagggtttccgttaggaaaatgtgACGCCAGACCTTTGAACGGCAGTGTTTTAATTTACCGGACATTTAAGATGTTTACCGGACTCATATGTATTGGGTGTGTAACCTGATTAgtgcgtccacccacggtgctcagaatgacaaatCACATTTCGATTATGGTTATTCTTCTTAACGGGACATGGAACTCGAGGGTGCAACCATGTGAATACTTCTTACCGAATTCCAATGCGCaatttgaagatgttagaataactgtccacatttacttttcctcagccaacaagatgagtaatgAACATAGTCTATTCCAAACAGACTGGAACAGTTGTgggacgatagatcccaaattcatatAACCAGTAGGCCTAGTTTACATCCCAATTTTTAAAGCAATGAGGCTCATGCAACAGATCTGAAAGTTTAACTTAAAATGTTCATAAACaaatttcttcacattataagcacagAAATTCCACACAAGGCAGTAGGCTATGTGCGAATATTCGTTCCATAATACAATTGTTAGGAAAAAATAGTTGTCAAAAGCACACCACACATGCGAGCGGTTTCATGAGACAGAGTTGAAAATATCTGTTAGAAATTTAGAAAGAGTGGACCTCTAAAggtgcaacaactagcatgggctgcttatatgactaggattgtgcctttcggctactggacaatgaaagaagGTTGATCTGAAAACCAGTAGAACATGAGAAATAGGCTACTGGTTTCAATAGAATATGGAAGCCGTTAGAAAATAATTGCCTGCACGTTTGGTTggattttggctaggctactttgaagcaaggtaagacatgcctcataatatgtagtTAAATGTTccggtttcaaacaattaagtatatgttttcaaaatacaTACCTGCCTCCtgctcattgcaaagtggtgtgttgACACGCTGAAGCCTGCCTAGTTGCCTATGCACTTGAATGGCGAATGGGAAGTGCGCTTCAATTAACAGTtgataaataaaaatagtagctCTTTTTAATCGTGACCATCAAAACTGTTTTTAACACAAGATTGCATATAGAATTGTTGTGCAGTGATTGGGCTTATAGTAGCACGTTTCACTCCAGCAGCAACAAACAAGCTGTTTGATGAGCTGTAGAAGCAGCTCTTGCGCTACATCGACTGGTATTTCAATCAATAAATAGGCTAAAATGCATTTTCACAATGCAATTTTCCTTCTTCTCCAGGACAATAGGCCGGCGGCAATTTTAGTTATCGGCCAAAAGCCGGCTATTaccggctaacggaaaccctgtcacaaacacacacacacaggtaaggtGTTCAGTCAGTGACAAATACTCACTCTAAACCCAGCCATCACACATACAGACTCATACAGATGTGCAGTTGAGGAAACATGACTGCTGACGAGTCCGGCTGAGGCACGACAGGCGTGCAAAACAGGGACATAGACAACACCCCTCGACAAAGCCAGTCTTGCTGCTGGTGCTCTCTGATACTGCTACTCAACAGGCTGAGCCGGCTAGCGCTCTGCCTTCTAGCATGGCATCTAGCCCCGCTACACAATGTCTGGGTTAATCAGACTCTTCCGCAGCTTCTTCCAATGCAAGCTTTGCGTTTTAAACGGCATCACAATTGACATCTGTACATGTCTTGGAGTGTTGTTCATCTGTACTCTTGTGTGTCGATACTATTGTGCTTCACTGTGTTGCCGTTTGTAGTGGCTACATGGGTGTATTTCAACTGCACAGTGCACATTTTGGTTTGTTATAAACGGCTTTGGTTGTAGTTGGTCATTGCTGGAAACAGTTGAAAAATCCACATCTCGTAGAATACTATGTCAATGCAAAAATCTATTGATACATTCCTTTATATTATTTTGTAATGTTTATACAAGAGACAAATGTTTGAGCGAACATTTATTCAGAGGTAttctattttatttgtatttaaagaATAGATATTACAAAAGCTAATGAGTGCTGTGGTGTAATGTATGTTTCAAATACCTGCGTATGACTAGTTTGGGGAAATTCTCACGTCTAATTGTTGTACTGGGTGTGTGACGATTATTTGTGTAATGTTTAACTGTCGTAATGAGCTGTTTAGATATGCTAAAAGCCGATGGTCATGTTGCTGTAAGATGATTTTAGTATGCGTGTACACCATATTTGTACTAATTTCATAGTGAGTCGAGTGGCTTGTTGTAGGGATATTATTTTTCTATCAAGTACCAAGGTGATGATACGTATTGTTATTTATGATACATTTTATTTCACGTTTGTTTTCTGAAATGGCTCGAGAGGGAGAGTAACACTGTAAGGAGAAAGAACGAAGGAAAAGAATGATAAAGGAATAAAAGAATGAGGCAGAGATGAAAAAGAAAGGGATAACAGGATATGAAGGAAAGATGTGGTGGTAGAAGAGGATTTGGGAGGTGAatgaggaaggagaagaggaccgaTATGAGGTGGTGCTTAATTCAATTGAAAACCTTGTAACATCCATGATTTATCAATAAACCCCTGCTGACTCTTATTAGACTGGGGTTGACTTAATGTTCGGAAAGTAATAGCAATATGATTTAAATTGTCAATAGTGACATTGTGTTGATTACTTCTGTAAGATATATTTAGCTATCTGCTCAATATCAATGTCGCATAGCATTTATCctcagtaatatctaatgtctcatCTAAGATTATTGTCAAATTGTGCTGGATGTTTTGTTATACCGCAAAACAAAAATGGTCTTTGTatttattacatgtattttttctaTGGTGAAAATTAAGTACATTGTCTATTTTATATATTAATAATTGAAATAAATGTTGTATATATTGTACATAAAA
>TU1915119
AGACAAATGTTTGAGCGAACATTTATTCAGAGGTAttctattttatttgtatttaaagaATAGATATTACAAAAGCTAATGAGTGCTGTGGTGTAATGTATGTTTCAAATACCTGCGTATGACTAGTTTGGGGAAATTCTCACGTCTAATTGTTGTACTGGGTGTGTGACGATTATTTGTGTAATGTTTAACTGTCGTAATGAGCTGTTTAGATATGCTAAAAGCCGATGGTCATGTTGCTGTAAGATGATTTTAGTATGCGTGTACACCATATTTGTACTAATTTCATAGTGAGTCGAGTGGCTTGTTGTAGGGATATTATTTTTCTATCAAGTACCAAGGTGATGATACGTATTGTTATTTATGATACATTTTATTTCACGTTTGTTTTCTGAAATGGCTCGAGAGGGAGAGTAACACTGTAAGGAGAAAGAACGAAGGAAAAGAATGATAAAGGAATAAAAGAATGAGGCAGAGATGAAAAAGAAAGGGATAACAGGATATGAAGGAAAGATGTGGTGGTAGAAGAGGATTTGGGAGGTGAatgaggaaggagaagaggaccgaTATGAGGTGGTGCTTAATTCAATTGAAAACCTTGTAACATCCATGATTTATCAATAAACCCCTGCTGACTCTTATTAGACTGGGGTTGACTTAATGTTCGGAAAGTAATAGCAATATGATTTAAATTGTCAATAGTGACATTGTGTTGATTACTTCTGTAAGATATATTTAGCTATCTGCTCAATATCAATGTCGCATAGCATTTATCctcagtaatatctaatgtctcatCTAAGATTATTGTCAAATTGTGCTGGATGTTTTGTTATACCGCAAAACAAAAATGGTCTTTGTatttattacatgtattttttctaTGGTGAAAA

Function

NR:

description
PREDICTED: transcription factor MafF-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575974.2 False 3710 mRNA 0.42 3 21896705 21901527
XM_021575973.2 False 3926 mRNA 0.42 3 21896705 21902217
TU1915119 True 893 lncRNA 0.34 1 21896770 21897662

Neighbor

gene id symbol gene type direction distance location
LOC110499087 LOC106589541 coding downstream 110501 21684993 ~ 21786204 (-)
trnar-ccu-54 NA coding downstream 186513 21710120 ~ 21710192 (-)
LOC110499092 kcd17 coding downstream 194942 21685612 ~ 21701763 (-)
phf5a LOC102780084 coding downstream 300187 21589006 ~ 21596518 (-)
LOC110498762 LOC106589530 coding downstream 400270 21444791 ~ 21496435 (-)
shisa9a shisa9 coding upstream 302775 22204992 ~ 22252446 (-)
LOC118942052 mkl2 coding upstream 484865 22386323 ~ 22391573 (-)
LOC110499164 litaf coding upstream 489424 22391641 ~ 22395025 (-)
ubald1a LOC106589553 coding upstream 512397 22414614 ~ 22446035 (-)
rhbdf1b LOC106589555 coding upstream 588521 22490738 ~ 22537702 (-)
G1673887 NA non-coding downstream 11814 21884219 ~ 21884891 (-)
G1673878 NA non-coding downstream 20261 21874492 ~ 21876444 (-)
G1673762 NA non-coding downstream 33994 21862509 ~ 21862711 (-)
G1673758 NA non-coding downstream 37044 21859303 ~ 21859661 (-)
G1673752 NA non-coding downstream 41695 21854545 ~ 21855010 (-)
G1673907 NA non-coding upstream 38944 21941161 ~ 21947615 (-)
G1673910 NA non-coding upstream 42645 21944862 ~ 21951016 (-)
G1673911 NA non-coding upstream 47860 21950077 ~ 21956013 (-)
G1673912 NA non-coding upstream 48362 21950579 ~ 21951943 (-)
G1673914 NA non-coding upstream 56583 21958800 ~ 21959555 (-)
G1673740 LOC106589538 other downstream 51912 21836333 ~ 21844793 (-)
G1672649 dhx8 other downstream 1166633 20729275 ~ 20730072 (-)
G1672588 NA other downstream 1226288 20620742 ~ 20670417 (-)
G1672381 LOC106589294 other downstream 1645540 20249459 ~ 20251165 (-)
G1674299 NA other upstream 429133 22331350 ~ 22331806 (-)
G1674481 LOC106613263 other upstream 494692 22396909 ~ 22397223 (-)
G1674592 NA other upstream 689353 22591570 ~ 22601548 (-)

Expression


Co-expression Network