LOC110513322 (rsl1d1)


Basic Information

Item Value
gene id LOC110513322
gene name rsl1d1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21936590 ~ 21959627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037961.1
AGAGTGACGTAACGCAATCGATTTGCGCATGCGCAGCCTGGAAAAACGTGAAGAAAGAAGTATGGCAGACAAACCGGAGGATTTGCCTCTGGACCGGGTGCAGAAGGCTGTTAAGAGCACTGCAGGCTTTCCAGAAGACCAAATCCACCCCAGACTCTGCTCCTGGACGAGAGTCAACACCTCTCCCTCTTAACACTATGGAAGATCCTCAAGCAGATCCAGACCATCCCCGTGTGAGTCCCTTTGTCCACACAGTACAGAGCAACATGGCTACATAATACAATAATATCTATGGAAACAGTGTCTATGGAAAAAGTGTGTTTCTCCAGCAACACACTGTTCTGGAGTATAGGTGGTGAAGCTGTTGTACTAATCACAAGTCACTCAGCCCCTTGCCTCATGGCATCTACACCAGAGATGACCCCTGACCAGATCCAACAGTTCTGCAAGAAGGAGAGGGGGGTCGAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACAGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACCGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAA
>XR_005037963.1
AGAGTGACGTAACGCAATCGATTTGCGCATGCGCAGCCTGGAAAAACGTGAAGAAAGAAGTATGGCAGACAAACCGGAGGATTTGCCTCTGGACCGGGTGCAGAAGGCTGTTAAGAGCACTGCAGGCTTTCCAGAAGACCAAATCCACCCCAGACTCTGCTCCTGGACGAGAGTCAACACCTCTCCCTCTTAACACTATGGAAGATCCTCAAGCAGATCCAGACCATCCCCGTGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACAGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACCGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAA
>XM_036955982.1
AGAGTGACGTAACGCAATCGATTTGCGCATGCGCAGCCTGGAAAAACGTGAAGAAAGAAGTATGGCAGACAAACCGGAGGATTTGCCTCTGGACCGGGTGCAGAAGGCTGTTAAGAGCACTGCAGGCTTTCCAGAAGACCAAATCCACCCCAGACTCTGCTCCTGGACGAGAGTCAACACCTCTCCCTCTTAACACTATGGAAGATCCTCAAGCAGATCCAGACCATCCCCGTGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACAGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACCGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTT
>XR_005037962.1
TTTGCGCATGCGCAGCCTGGAAAAACGTGAAGAAAGAAGTATGGCAGACAAACCGGAGGATTTGCCTCTGGACCGGGTGCAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACAGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACCGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAA
>XM_036955983.1
ttattttcccatgatgtcaagcaaagaggcactgattttgaagGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACCGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTT
>XR_005037964.1
GCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACAGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACCGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAAAAAATGCGCGGAAACAGAAGTCTGCAAAGAAAGAACAGAAGTCTACAGAAAAAAACTCTGGTGCTGACAGGGAGGAAGAGGTTCCCATAGTAATGCCAAGGAAAAAGGCTAAAGTGGAGGTCTGTACCCCGCTAGTGTCAAACCAAATGCATTTAAATATTATTAGTTCATCAATTAACTATTTTTGTCAAATAACATTTTTCAAAGGACTCTGTGCACTGGTTTGGAACTTGTTTCACTCTCCTTATGAATTTTGGTTTAAATCCAATGCTATATGAAACTTATTCCAGTGAGGCAGGGGAGCGGTGTCCCTTTTATGGTGTTTCCCTGTTCACTCTCTGGGAACACTGCCCCCCCAGTGGAAGTTAATTGACCGACCTCTGTCTCTACAGAAAGACTCCTCTCAGTACTGTGCAAATTGTTTTCTTCTCTCTGATCCGCGTAGAAGCCGACCAAGAAGGGACTTGTGAAGGTACCCAAACCAACAGGAGGAaaggtataaaataaaaaatgaccaAGAAGGCTGCAAAAATACCCTCACAAAATATGAAAAGATAAGTACCTAAATTTGAATGTCTGTTTGTCAACTCAGTGGAACAcaactctcctttctctcctcattGCTACCTGTGTATTACTCCCCCTTCTCTAAATGGAACTCTGACTTCATTATACTGATATAAAAAGGACTGGTTCTAAATGTATATATACTGTCAATGTTAATTGATCCAAG
>TU1915004
GAAAGAAGTATGGCAGACAAACCGGAGGATTTGCCTCTGGACCGGGTGCAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACAGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACCGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACCGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAAAAAATGCGCGGAAACAGAAGTCTGCAAAGAAAGAACAGAAGTCTACAGAAAAAAACTCTGGTGCTGACAGGGAGGAAGAGGTTCCCATAGTAATGCCAAGGAAAAAGGCTAAAGTGGAGAAGCCGACCAAGAAGGGACTTGTGAAGGTACCCAAACCAACAGGAGGAaaggtataaaataaaaaatgaccaAGAAGGCTGCAAAAATACCCTCACAAAATATGAAAAGATAAGTACCTAAATTTGAATGTCTGTTTGTCAACTCAGTGGAACAcaactctcctttctctcctcattGCTACCTGTGTATTACTCCCCCTTCTCTAAATGGAACTCTGACTTCATTATACTGATATAAAAAGGACTGGTTCTAAATGTATATATACTGTCAATGTTAATTGATCCAAGGACAAACTCGTGTGTTGCAAATCTTTGTCTGCCCCATAAAAGGGTCTTGTTCAAAATCATCTTTTGTATAAGCCCAACTTGTAAATTAAAATATTACCACA

Function

symbol description
rsl1d1 Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to be part of 90S preribosome. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1).

NR:

description
ribosomal L1 domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037961.1 False 1096 mRNA 0.50 7 21936590 21945117
XR_005037963.1 False 861 mRNA 0.51 7 21936590 21945117
XM_036955982.1 False 1088 mRNA 0.50 10 21936590 21947717
XR_005037962.1 False 710 mRNA 0.50 6 21936611 21945117
XM_036955983.1 False 749 mRNA 0.48 8 21940666 21947717
XR_005037964.1 False 1734 mRNA 0.45 10 21945076 21959526
TU1915004 True 1667 TUCP 0.46 12 21936642 21959627
Loading

Neighbor

gene id symbol gene type direction distance location
gspt1 gspt1 coding upstream 125 21924825 ~ 21936465 (+)
dmc1 LOC106609504 coding upstream 16981 21907617 ~ 21919609 (+)
tomm22 LOC106589546 coding upstream 29369 21902605 ~ 21907221 (+)
tmem184ba LOC106609488 coding upstream 42033 21876875 ~ 21894557 (+)
LOC110499080 LOC106609470 coding upstream 60131 21867834 ~ 21876459 (+)
LOC110499590 tnfrsf17 coding downstream 13212 21972738 ~ 21974195 (+)
snx29 snx29 coding downstream 14812 21974338 ~ 22091580 (+)
cpped1 cpped1 coding downstream 292605 22252131 ~ 22318724 (+)
LOC118942051 NA coding downstream 301221 22260747 ~ 22281843 (+)
ercc4 ercc4 coding downstream 381203 22340729 ~ 22347757 (+)
G1673778 NA non-coding upstream 34510 21901867 ~ 21902080 (+)
G1673775 LOC106589545 non-coding upstream 36408 21896765 ~ 21900182 (+)
G1673768 NA non-coding upstream 70495 21865886 ~ 21866095 (+)
G1673766 NA non-coding upstream 71908 21864483 ~ 21864682 (+)
G1673765 NA non-coding upstream 72774 21863587 ~ 21863816 (+)
G1673803 NA non-coding downstream 6408 21965934 ~ 21966202 (+)
G1673783 NA non-coding downstream 9111 21968637 ~ 21971293 (+)
G1673838 NA non-coding downstream 82917 22042443 ~ 22044388 (+)
G1673841 NA non-coding downstream 89228 22048754 ~ 22050773 (+)
tnrc6b LOC106589538 other upstream 90724 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 486244 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 499209 21422168 ~ 21437402 (+)
G1673204 NA other upstream 546812 21386329 ~ 21389778 (+)
G1673063 NA other upstream 619178 21316798 ~ 21317412 (+)
LOC110499192 LOC106589579 other downstream 1297278 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1620504 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 3123138 25082664 ~ 25083277 (+)
G1677738 NA other downstream 3677165 25636691 ~ 25641614 (+)
G1678963 NA other downstream 4502668 26462194 ~ 26467953 (+)

Expression

LOC110513322(rsl1d1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110513322(rsl1d1) Expression in each Bioproject

Bar chart with 21 bars.
LOC110513322(rsl1d1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network