Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118942051 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 22260747 ~ 22281843 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| uncharacterized protein LOC110523915 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036955992.1 | False | 1748 | mRNA | 0.47 | 2 | 22260747 | 22281843 |
| XM_036955988.1 | False | 1747 | mRNA | 0.48 | 2 | 22279997 | 22281839 |
| XM_036955985.1 | False | 1747 | mRNA | 0.48 | 2 | 22279997 | 22281843 |
| XM_036955986.1 | False | 1711 | mRNA | 0.48 | 3 | 22279997 | 22281843 |
| XM_036955987.1 | False | 1711 | mRNA | 0.48 | 3 | 22279997 | 22281843 |
| XM_036955991.1 | False | 1659 | mRNA | 0.47 | 4 | 22280000 | 22281838 |
| XM_036955989.1 | False | 1697 | mRNA | 0.47 | 3 | 22280001 | 22281837 |
| XM_036955990.1 | True | 1697 | mRNA | 0.47 | 3 | 22280001 | 22281837 |
22,248,000
22,252,000
22,256,000
22,260,000
22,264,000
22,268,000
22,272,000
22,276,000
22,280,000
22,284,000
22,288,000
22,292,000
NC_048584.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| snx29 | snx29 | coding | upstream | 169167 | 21974338 ~ 22091580 (+) |
| LOC110499590 | tnfrsf17 | coding | upstream | 286552 | 21972738 ~ 21974195 (+) |
| LOC118942480 | NA | coding | upstream | 307612 | 21953008 ~ 21953135 (+) |
| LOC118942479 | NA | coding | upstream | 313222 | 21947398 ~ 21947525 (+) |
| LOC118942478 | NA | coding | upstream | 318900 | 21941720 ~ 21941847 (+) |
| ercc4 | ercc4 | coding | downstream | 58886 | 22340729 ~ 22347757 (+) |
| mrtfba | mkl2 | coding | downstream | 66074 | 22347917 ~ 22388445 (+) |
| foxj1b | LOC106589554 | coding | downstream | 179397 | 22461240 ~ 22465079 (+) |
| zgc:163057 | hbad | coding | downstream | 279606 | 22561449 ~ 22562880 (+) |
| LOC110499167 | LOC106589556 | coding | downstream | 289884 | 22571727 ~ 22572592 (+) |
| G1674190 | NA | non-coding | upstream | 7016 | 22253333 ~ 22253731 (+) |
| G1674044 | NA | non-coding | upstream | 53762 | 22200118 ~ 22206985 (+) |
| G1674065 | NA | non-coding | upstream | 64343 | 22196197 ~ 22196404 (+) |
| G1674064 | NA | non-coding | upstream | 65393 | 22194979 ~ 22195354 (+) |
| G1673841 | NA | non-coding | upstream | 209974 | 22048754 ~ 22050773 (+) |
| G1674254 | NA | non-coding | downstream | 18346 | 22300189 ~ 22300408 (+) |
| G1674259 | NA | non-coding | downstream | 22177 | 22304020 ~ 22304231 (+) |
| G1674261 | NA | non-coding | downstream | 23384 | 22305227 ~ 22305489 (+) |
| G1674263 | NA | non-coding | downstream | 23876 | 22305719 ~ 22305964 (+) |
| G1674292 | NA | non-coding | downstream | 45522 | 22327365 ~ 22327568 (+) |
| LOC110513322 | rsl1d1 | other | upstream | 301120 | 21936590 ~ 21959627 (+) |
| tnrc6b | LOC106589538 | other | upstream | 414881 | 21806703 ~ 21848442 (+) |
| G1673231 | LOC106589530 | other | upstream | 810401 | 21444883 ~ 21450346 (+) |
| LOC110499100 | LOC106589528 | other | upstream | 823366 | 21422168 ~ 21437402 (+) |
| G1673204 | NA | other | upstream | 870969 | 21386329 ~ 21389778 (+) |
| LOC110499192 | LOC106589579 | other | downstream | 974961 | 23252800 ~ 23269058 (+) |
| faap100 | faap100 | other | downstream | 1298187 | 23576429 ~ 23582556 (+) |
| G1677419 | LOC100194703 | other | downstream | 2800821 | 25082664 ~ 25083277 (+) |
| G1677738 | NA | other | downstream | 3354848 | 25636691 ~ 25641614 (+) |
| G1678963 | NA | other | downstream | 4180351 | 26462194 ~ 26467953 (+) |
