foxj1b (LOC106589554)


Basic Information

Item Value
gene id foxj1b
gene name LOC106589554
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22461240 ~ 22465079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955995.1
CCTTCCAGCACCCAGACTTTTTCATGTATCATTCCGTAAAGCAACTGGCCGGGAATTAAATAATTAGGATTATGCCAAAACGACTGAAATGGATGAAATAATCTGATGGATTTTTAAATGAACAGCTGGATCCTACTTTGGTGAGCCTTCCCCCTCTACTCTTGTTGCGCAGAGGATAGTGCTTCGCTGAAGTCCTTTGGGAATAGAGCACAGGGACGGATCGACAGACGGTTGCAACAGGTGCAAACTGTTCCCGAGCATCATCGCATTGAACAGTCCTACAAAATTTTCACATTTTTGCGGGTGACGGTTTCGTGCGTCACGCTCAGAATGCCTGTCCTGATGAGTCCGGAGATCGCCTCCAAGTTTAAGGAGAAATGTCTGAAATTACAGCCGGAGAACCAGGACACCGCAGCCGGGTCAGTGCACCTGGACGACAGCCTGACCAGCCTCCACTGGCTTCAGAACTTCTCCATCCTCAGCACTAACTCAGAAAGATCCACCGGCACCGGCTCCGGTTGCCCCTCACAGCACCTGGTCTCCTACCACCAGCGCCTGTACCCCCCGGGCACCGACTCCCCGTCTAGCCCTCCAGCAGGGGACACGGCCGCTACCGGGATGCCTCTCTGCCTCGGGAGCCCCGTTACCTCTGGCAGTAACTCCACCGACGCGCGTTTGCTGAATTATCCACACCACCAAACCACAACCTACCCTCACCTCAACCACCACATCACGCAGATCATCCCACCAGAGGAGATTGACTTTAAAACGAACCCCAAAGTCAAACCGCCTTATTCCTATGCCTCTCTCATCTGTATGGCCATGCAGGCCAGCAAGAAGCCCAAGGTGACTCTTTCCACCATCTATAACTGGATCACAGACAACTTCTGCTACTACAGACATGCTGAGCCCAGCTGGCAGAACTCTATCCGCCATAACCTCTCGCTCAACAAGTGCTTCATGAAAGTTCCGCGGCAGAAGGATGAACCAGGGAAAGGAGGCTTCTGGCAGATCGACCCTCAGTACGCTGACATGTTCGTCAACGGAGTCTTCAAGAGAAGGAGAATGTCCTCCAGCCACTACAACACCCACAGGCAGAGCAAGCTCCTACACAACCAGGAAACTGGCTACCACAGAGCCACTCAGCAGGGCCAAGATGGCTACCACTACCAAGGAGCTGGAGCCGGCAACAAGCGTAAACAACCTTCTCCAAGGCAAAACAGCAAGATGGCGGGGACACCCAAATCCCCACTGTTAGCCACAGAGGCCCACAGTGCAGATGTAGTTCTGAGGGGAGACTTTGACCTTGCATCTGTGTTTGACGATGTCCTCAGTGGAAACTGCAGTACATTCGAAGACCTGGACATCAACACTGCTCTGAGCTCCCTGGGCTGCGAGCTGGATCTGACCCTGCAGGAGAAGCACTCTGTTGGGCTGGGGaggtggtgtggagagggggacaaccagacccagaaccagacccagacccatgACTCTTATGGCTACATGGAGCTGAGTGGCTCAGTGGGATGTAATAGTAGTAACATAGGGAACCTTTACATTCAACAACAGCAGCTGAACCAGGATCAGTTGTTACAGACCCACCTGCACCAGTTTGAGGAGGTGACTCTGTTCCCAGAGCAGCAGGAGGTGCACCCCTGGGAGGAGATGAAGGAGGACGTGCAGGCCATCCCTCAGACTCTGGATCAGGGCTTTGGTCTGTGTGAAGGATTCTTCTCAGAGATACAACCCTGGGAGAGGGCTGAGGCCTACCTGTGACAAACCAACCACTGTTGAACCAATGCTTACGCCACCCCTTAGCCAAGGGATTCAGGCCCTAGCCACGACTTCCTTATAGTAAATGCTGGGACAGGGGATTCAGAAGACTGCTGGTCATTCATGTCCTGTCCATGCAGTTCCTTCAGACTATGGTTAAAGACTGGGTTGTTGTGGTTTGAAGGAGCATGTTGTATTTGTTTCACAAGACAATGAAACACTATTGGGCTTACCTTCTGCTATGTGCTCCACACTCCAAACAGATATGCACTCTATTGGCTTGTGGGGCAGACCTACATACAGATGACTATTTTTCTACATTAGCCTCATGAAATCTTATatacataaaatgtatttttttcttgtttgtttttttgcattatGTTTTTGAGAGATCTATGCTGTATGTTTATGACTTTATGAAGATCTATACTTCTGGTTTGATCGCTGACTAGGGAAGTCAATGAAGTCAAATGCAGTACTTAGTGTTGGGTCATAGTCAAACCTATTGATCCAATTTCAATGTGTTTTTCAAGTAAtcaattgaatatatatatatatatatatcgattAGAGTCTACGATAAGAGCCTAGATGGCCATGTGTCGTGTGTCATAGGCTATGGCAAAGCAGAAAGAGGGACGGAAATGAACTGAAATGCCTCAATCAGAATACCCAAGCATATGCACTTTGAGTGACAACAGGTATGTTTGAGGATATAAAATATTTCTGCTGTGCATCAGAATGCTATTTTCCCTTGTTCCATAAAACATGCAATGTCACAGATTCAGCGTGCACACACCATCATTTGACAGCAACACCACAGCCTTCGTAGGCACTGACGGTTTTGTTCAAGTTTTCCATTTTTCTGCCAATCTTACATTTGATTGAACTCTATTAATGACTCTGTTCAGGATATACTGAGGAAATCTGAATTCTCTCACTGGGTGATTGGCTTCCATTTTGTGATAATGATTACTGATTTTTGATTGATTACGTCAAACCACGATAAATATATAAATTAACAACAATGGACTGTTTTTTTGAAAGGATGATTAATTTAAAATGGTATGTTGTTTGGGAAAACGGATGAACCAATGAAAAGGCTTGTGCTCTAGAAAGGTTTGATTTTTTTTGAGTCAATGGTGAAGATCAGATCAACCTTTATACAATGTCTTCAATGTCATtctgttgtttttatttgtaCTCTTATAAGTTGTTAAAAATGCAATCATGCCTCAATGCAATAAATGTTGTC
>TU1915674
TGTTGGGTCATAGTCAAACCTATTGATCCAATTTCAATGTGTTTTTCAAGTAAtcaattgaatatatatatatatatatatcgattAGAGTCTACGATAAGAGCCTAGATGGCCATGTGTCGTGTGTCATAGGCTATGGCAAAGCAGAAAGAGGGACGGAAATGAACTGAAATGCCTCAATCAGAATACCCAAGCATATGCACTTTGAGTGACAACAGGTATGTTTGAGGATATAAAATATTTCTGCTGTGCATCAGAATGCTATTTTCCCTTGTTCCATAAAACATGCAATGTCACAGATTCAGCGTGCACACACCATCATTTGACAGCAACACCACAGCCTTCGTAGGCACTGACGGTTTTGTTCAAGTTTTCCATTTTTCTGCCAATCTTACATTTGATTGAACTCTATTAATGACTCTGTTCAGGATATACTGAGGAAATCTGAATTCTCTCACTGGGTGATTGGCTTCCATTTTGTGATAATGATTACTGATTTTTGATTGATTACGTCAAACCACGATAAATATA

Function

NR:

description
PREDICTED: forkhead box protein J1.2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955995.1 False 3034 mRNA 0.47 2 22461240 22465079
TU1915674 True 531 lncRNA 0.37 1 22464308 22464838

Neighbor

gene id symbol gene type direction distance location
mrtfba mkl2 coding upstream 72795 22347917 ~ 22388445 (+)
ercc4 ercc4 coding upstream 113483 22340729 ~ 22347757 (+)
cpped1 cpped1 coding upstream 142516 22252131 ~ 22318724 (+)
LOC118942051 NA coding upstream 179397 22260747 ~ 22281843 (+)
snx29 snx29 coding upstream 369660 21974338 ~ 22091580 (+)
zgc:163057 hbad coding downstream 96370 22561449 ~ 22562880 (+)
LOC110499167 LOC106589556 coding downstream 106648 22571727 ~ 22572592 (+)
LOC110499592 LOC106589557 coding downstream 109463 22574542 ~ 22575413 (+)
LOC118942010 LOC106589557 coding downstream 117737 22582816 ~ 22583667 (+)
LOC110499593 LOC106589557 coding downstream 126024 22591103 ~ 22591954 (+)
G1674321 LOC106589553 non-coding upstream 42346 22414914 ~ 22418894 (+)
G1674343 NA non-coding upstream 51028 22409989 ~ 22410212 (+)
G1674339 NA non-coding upstream 54956 22405940 ~ 22406284 (+)
G1674333 NA non-coding upstream 60667 22400328 ~ 22400573 (+)
G1674331 NA non-coding upstream 64001 22397020 ~ 22397239 (+)
G1674386 NA non-coding downstream 12556 22477635 ~ 22477851 (+)
G1674387 NA non-coding downstream 12923 22478002 ~ 22478209 (+)
G1674390 NA non-coding downstream 16333 22481412 ~ 22481707 (+)
G1674393 NA non-coding downstream 19979 22485058 ~ 22485285 (+)
G1674398 NA non-coding downstream 25719 22490798 ~ 22492131 (+)
LOC110513322 rsl1d1 other upstream 501613 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 615374 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 1010894 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 1023859 21422168 ~ 21437402 (+)
G1673204 NA other upstream 1071462 21386329 ~ 21389778 (+)
LOC110499192 LOC106589579 other downstream 791725 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1114951 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 2617585 25082664 ~ 25083277 (+)
G1677738 NA other downstream 3171612 25636691 ~ 25641614 (+)
G1678963 NA other downstream 3997115 26462194 ~ 26467953 (+)

Expression


Co-expression Network