LOC110499167 (LOC106589556)


Basic Information

Item Value
gene id LOC110499167
gene name LOC106589556
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22571727 ~ 22572592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576119.1
TCGTTTTGGGGGCGGAGTGCACAAATACCATAAAACTAAAGatatttccgattttttttcatgATTCCTATTCCCTATTCTCACTAGAACCTAAGCTAAATCATCACGAGCAACATGGTTGAGTGGACAGATGAAGAGCGCGCGGCCATCTCCAACATCTTCTCCAAACTAGACTATGACGAAATTGGCCAAAAGTCCCTGTCAAGGTGTCTGATCGTGTACCCCTGGACCCAGAGGTATTTCGGGGGCTTCGGCAACCTGTACAACGCAGAGGCCATCATGAACAACCCTATGATTGCTAAGCACGGCACCACGGTGCTGCACGGTCTGGACAGAGCTCTGAAGAACATGGACGACATCAAGAACACATACGCCGAGCTGAGCGTTCTGCACTCCGAGAAACTGCACGTGGATCCCGACAACTTTAAGCtgttgtctgactgtctgaccatCGTCATCGCTGGGAAGATGGGCAACGCATTCACCCCCGAATATCAGGCATCCTTCCAGAAGTTCTTGTCAGTGGTGGTGTCTGCTCTGGGCAGGCAGTACCACTAGAGTCAGTCTCCATATAGCTGGCCGAGGAGACAGCCTGTGTGCTCATGTGTTTCACTCTtcaatgaataaataaaataagcataTAAGCATC

Function

NR:

description
hemoglobin subunit beta-2-like

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576119.1 True 649 mRNA 0.49 3 22571727 22572592

Neighbor

gene id symbol gene type direction distance location
zgc:163057 hbad coding upstream 8847 22561449 ~ 22562880 (+)
foxj1b LOC106589554 coding upstream 106648 22461240 ~ 22465079 (+)
mrtfba mkl2 coding upstream 183282 22347917 ~ 22388445 (+)
ercc4 ercc4 coding upstream 223970 22340729 ~ 22347757 (+)
cpped1 cpped1 coding upstream 253003 22252131 ~ 22318724 (+)
LOC110499592 LOC106589557 coding downstream 1950 22574542 ~ 22575413 (+)
LOC118942010 LOC106589557 coding downstream 10224 22582816 ~ 22583667 (+)
LOC110499593 LOC106589557 coding downstream 18511 22591103 ~ 22591954 (+)
LOC110499168 LOC106589557 coding downstream 27894 22600486 ~ 22601541 (+)
arhgap17a arhgap17 coding downstream 69833 22642425 ~ 22691724 (+)
G1674446 NA non-coding upstream 14517 22556984 ~ 22557210 (+)
G1674441 NA non-coding upstream 20956 22550501 ~ 22550771 (+)
G1674434 NA non-coding upstream 30578 22540922 ~ 22541149 (+)
G1674409 NA non-coding upstream 66601 22504123 ~ 22505126 (+)
G1674404 rhbl4 non-coding upstream 74936 22496465 ~ 22496791 (+)
G1674616 NA non-coding downstream 64065 22636657 ~ 22636891 (+)
G1674618 NA non-coding downstream 66962 22639554 ~ 22639924 (+)
G1674659 NA non-coding downstream 126341 22698933 ~ 22699144 (+)
G1674664 LOC106609649 non-coding downstream 132968 22705560 ~ 22706269 (+)
LOC110513322 rsl1d1 other upstream 612100 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 725861 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 1121381 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 1134346 21422168 ~ 21437402 (+)
G1673204 NA other upstream 1181949 21386329 ~ 21389778 (+)
LOC110499192 LOC106589579 other downstream 684212 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 1007438 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 2510072 25082664 ~ 25083277 (+)
G1677738 NA other downstream 3064099 25636691 ~ 25641614 (+)
G1678963 NA other downstream 3889602 26462194 ~ 26467953 (+)

Expression


Co-expression Network