LOC118942010 (LOC106589557)


Basic Information

Item Value
gene id LOC118942010
gene name LOC106589557
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22582816 ~ 22583667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955557.1
TTCGGGATCCGTCTAACTCCAGACCCTTCTAAAGCTTAATTCATCCTCTGAATATCTTGTGTGGTACAGCAGAACCTCTTGCCAAAATGAGCCAGTCAGCTAAGGAAAAAGTAATCGTCAAGGACTTCTTTGCGAAAGTCTCCAGCAGGTCGGACGAGATCGGCGCCGAGGCTCTCGCCAGGTTGATCGTGGTGTACCCCCAGACCAAGTCTTCCTTCGCCCACTGGAAGGACCTGAGCCCCAACGGCGCTCCGGCTAAGAAGCAAGGCAGTACCATCATGGGTGGCTTGTACGAGGCCGTGAGCAAGATCGATGACCTGGCCGGTGGTCTTCTGACCCTGAGCGAGCTGCACGCCTTCGTGCTTAAAGTTGACCCTTACATCGAAATGTAGTAATTCTAGTCCTTATTATGTTTACTTTTGAATAATCTTATAATTAGGTTGGTAAAaataccatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaaacataaagatataaaactgtattttttttgtgaagaatcaacaacaa

Function

NR:

description
hemoglobin subunit alpha-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955557.1 True 565 mRNA 0.47 2 22582816 22583667

Neighbor

gene id symbol gene type direction distance location
LOC110499592 LOC106589557 coding upstream 7403 22574542 ~ 22575413 (+)
LOC110499167 LOC106589556 coding upstream 10224 22571727 ~ 22572592 (+)
zgc:163057 hbad coding upstream 19936 22561449 ~ 22562880 (+)
foxj1b LOC106589554 coding upstream 117737 22461240 ~ 22465079 (+)
mrtfba mkl2 coding upstream 194371 22347917 ~ 22388445 (+)
LOC110499593 LOC106589557 coding downstream 7436 22591103 ~ 22591954 (+)
LOC110499168 LOC106589557 coding downstream 16819 22600486 ~ 22601541 (+)
arhgap17a arhgap17 coding downstream 58758 22642425 ~ 22691724 (+)
zdhhc4 zdhhc4 coding downstream 147663 22731330 ~ 22738523 (+)
pgp pgp coding downstream 157355 22741022 ~ 22743986 (+)
G1674446 NA non-coding upstream 25606 22556984 ~ 22557210 (+)
G1674441 NA non-coding upstream 32045 22550501 ~ 22550771 (+)
G1674434 NA non-coding upstream 41667 22540922 ~ 22541149 (+)
G1674409 NA non-coding upstream 77690 22504123 ~ 22505126 (+)
G1674404 rhbl4 non-coding upstream 86025 22496465 ~ 22496791 (+)
G1674616 NA non-coding downstream 52990 22636657 ~ 22636891 (+)
G1674618 NA non-coding downstream 55887 22639554 ~ 22639924 (+)
G1674659 NA non-coding downstream 115266 22698933 ~ 22699144 (+)
G1674664 LOC106609649 non-coding downstream 121893 22705560 ~ 22706269 (+)
LOC110513322 rsl1d1 other upstream 623189 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 736950 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 1132470 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 1145435 21422168 ~ 21437402 (+)
G1673204 NA other upstream 1193038 21386329 ~ 21389778 (+)
LOC110499192 LOC106589579 other downstream 673137 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 996363 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 2498997 25082664 ~ 25083277 (+)
G1677738 NA other downstream 3053024 25636691 ~ 25641614 (+)
G1678963 NA other downstream 3878527 26462194 ~ 26467953 (+)

Expression


Co-expression Network