LOC110499593 (LOC106589557)


Basic Information

Item Value
gene id LOC110499593
gene name LOC106589557
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22591103 ~ 22591954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576722.2
TTCGGGATCCGTCTAACTCCAGACCCTTCTAAAGCTTAATTCATCCTCTGAATATCTTGTGTGGTACAGCAGAACCTCTTGCCAAAATGAGCCAGTCAGCTAAGGAAAAAGTAATCGTCAAGGACTTCTTTGCGAAAGTCTCCAGCAGGTCGGACGAGATCGGCGCCGAGGCTCTCGCCAGGTTGATCGTGGTGTACCCCCAGACCAAGTCTTCCTTCGCCCACTGGAAGGACCTGAGCCCCAACGGCGCTCCGGCTAAGAAGCAAGGCAGTACCATCATGGGTGGCTTGTACGAGGCCGTGAGCAAGATCGATGACCTGGCCGGTGGTCTTCTGACCCTGAGCGAGCTGCACGCCTTCGTGCTTAAAGTTGACCCTTACATCGAAATGTAGTAATTCTAGTCCTTATTATGTTTACTTTTGAATAATCTTATAATTAGGTTGGTAAAaataccatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaaacataaagatataaaactgtattttttttgtgaagaatcaacaacaa

Function

NR:

description
hemoglobin subunit alpha-1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576722.2 True 565 mRNA 0.47 2 22591103 22591954

Neighbor

gene id symbol gene type direction distance location
LOC118942010 LOC106589557 coding upstream 7436 22582816 ~ 22583667 (+)
LOC110499592 LOC106589557 coding upstream 15690 22574542 ~ 22575413 (+)
LOC110499167 LOC106589556 coding upstream 18511 22571727 ~ 22572592 (+)
zgc:163057 hbad coding upstream 28223 22561449 ~ 22562880 (+)
foxj1b LOC106589554 coding upstream 126024 22461240 ~ 22465079 (+)
LOC110499168 LOC106589557 coding downstream 8532 22600486 ~ 22601541 (+)
arhgap17a arhgap17 coding downstream 50471 22642425 ~ 22691724 (+)
zdhhc4 zdhhc4 coding downstream 139376 22731330 ~ 22738523 (+)
pgp pgp coding downstream 149068 22741022 ~ 22743986 (+)
bricd5 LOC106589562 coding downstream 152270 22744224 ~ 22748899 (+)
G1674446 NA non-coding upstream 33893 22556984 ~ 22557210 (+)
G1674441 NA non-coding upstream 40332 22550501 ~ 22550771 (+)
G1674434 NA non-coding upstream 49954 22540922 ~ 22541149 (+)
G1674409 NA non-coding upstream 85977 22504123 ~ 22505126 (+)
G1674404 rhbl4 non-coding upstream 94312 22496465 ~ 22496791 (+)
G1674616 NA non-coding downstream 44703 22636657 ~ 22636891 (+)
G1674618 NA non-coding downstream 47600 22639554 ~ 22639924 (+)
G1674659 NA non-coding downstream 106979 22698933 ~ 22699144 (+)
G1674664 LOC106609649 non-coding downstream 113606 22705560 ~ 22706269 (+)
LOC110513322 rsl1d1 other upstream 631476 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 745237 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 1140757 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 1153722 21422168 ~ 21437402 (+)
G1673204 NA other upstream 1201325 21386329 ~ 21389778 (+)
LOC110499192 LOC106589579 other downstream 664850 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 988076 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 2490710 25082664 ~ 25083277 (+)
G1677738 NA other downstream 3044737 25636691 ~ 25641614 (+)
G1678963 NA other downstream 3870240 26462194 ~ 26467953 (+)

Expression


Co-expression Network