Gene
RNA
| Item | Value |
|---|---|
| gene id | zdhhc4 |
| gene name | zdhhc4 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 22731330 ~ 22738523 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| zdhhc4 | Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane; endoplasmic reticulum membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC4 (zinc finger DHHC-type palmitoyltransferase 4). |
| description |
|---|
| probable palmitoyltransferase ZDHHC4 |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016746 | transferase activity, transferring acyl groups | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K20003 | ZDHHC4, SWF1; palmitoyltransferase ZDHHC4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021576133.2 | True | 1481 | mRNA | 0.47 | 7 | 22731330 | 22738523 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| arhgap17a | arhgap17 | coding | upstream | 39606 | 22642425 ~ 22691724 (+) |
| LOC110499168 | LOC106589557 | coding | upstream | 129789 | 22600486 ~ 22601541 (+) |
| LOC110499593 | LOC106589557 | coding | upstream | 139376 | 22591103 ~ 22591954 (+) |
| LOC118942010 | LOC106589557 | coding | upstream | 147663 | 22582816 ~ 22583667 (+) |
| LOC110499592 | LOC106589557 | coding | upstream | 155917 | 22574542 ~ 22575413 (+) |
| pgp | pgp | coding | downstream | 2499 | 22741022 ~ 22743986 (+) |
| bricd5 | LOC106589562 | coding | downstream | 5701 | 22744224 ~ 22748899 (+) |
| tex2l | LOC106589568 | coding | downstream | 102745 | 22841268 ~ 22865328 (+) |
| LOC110499186 | LOC106589571 | coding | downstream | 175599 | 22914122 ~ 22916645 (+) |
| LOC110499185 | LOC106589570 | coding | downstream | 180361 | 22918884 ~ 22938915 (+) |
| G1674664 | LOC106609649 | non-coding | upstream | 25061 | 22705560 ~ 22706269 (+) |
| G1674659 | NA | non-coding | upstream | 32186 | 22698933 ~ 22699144 (+) |
| G1674618 | NA | non-coding | upstream | 91406 | 22639554 ~ 22639924 (+) |
| G1674616 | NA | non-coding | upstream | 94439 | 22636657 ~ 22636891 (+) |
| G1674625 | NA | non-coding | downstream | 10562 | 22749085 ~ 22765432 (+) |
| G1674840 | NA | non-coding | downstream | 90044 | 22828567 ~ 22828796 (+) |
| G1674848 | NA | non-coding | downstream | 93596 | 22832119 ~ 22832340 (+) |
| G1674881 | NA | non-coding | downstream | 200786 | 22939309 ~ 22940706 (+) |
| G1674902 | NA | non-coding | downstream | 211863 | 22950386 ~ 22952493 (+) |
| LOC110513322 | rsl1d1 | other | upstream | 771703 | 21936590 ~ 21959627 (+) |
| tnrc6b | LOC106589538 | other | upstream | 885464 | 21806703 ~ 21848442 (+) |
| G1673231 | LOC106589530 | other | upstream | 1280984 | 21444883 ~ 21450346 (+) |
| LOC110499100 | LOC106589528 | other | upstream | 1293949 | 21422168 ~ 21437402 (+) |
| G1673204 | NA | other | upstream | 1341552 | 21386329 ~ 21389778 (+) |
| LOC110499192 | LOC106589579 | other | downstream | 518281 | 23252800 ~ 23269058 (+) |
| faap100 | faap100 | other | downstream | 841507 | 23576429 ~ 23582556 (+) |
| G1677419 | LOC100194703 | other | downstream | 2344141 | 25082664 ~ 25083277 (+) |
| G1677738 | NA | other | downstream | 2898168 | 25636691 ~ 25641614 (+) |
| G1678963 | NA | other | downstream | 3723671 | 26462194 ~ 26467953 (+) |
