pgp (pgp)


Basic Information

Item Value
gene id pgp
gene name pgp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22741022 ~ 22743986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576135.2
tttactcgccctagcagagctggttaggctgttttcatgttatccatatCGTTTTGGTGACTGTAGCTGTGCTGCTGGtaacaatttaattacgtttttttgccgacgtttactgacaatGGTCATATTCAACGTGTTGCACGTTTGTAAATGCATCCGTTATTCAGCACTCTTGCacacagacgagagtgctctgaaatcgtaCATAGCCAAAGttaatttacgaacgcacccttaACCTGTATATATTGAACCTAGCAAGGAACCCGGAAGAGGGCACATGGATGCTCCTGTCACTTTAAACCGGTGCGGAAGTGTGTTACAGTATGGATTTGATGCAATGATATAAGGTCAGGAAACTTCGCAATAAATCGTTATTGAAGACACCAAATGATTCAACTGCAAGATCAAACGAAATAGTACTCGTGCTTAATTTTAATGTCATATTTCTTCGGGGAGATTGTTCTCGTACATTTTTCGCTAAACGTCGTGGCTAGTCTGCAAGAAAGTGGTAGCAtacagtagctagccagttaTTTTTGGACACTGACTGATCGAGGAACAAAACGCACCCGTTTTCCCAATGGCTGTGTCAAAATGCACCCGGCTGAACGGTCCCTTAATAAAGCAAATGTTAGATTCTGTGGACAGTGTCCTCTTCGACTGTGATGGTGTCATCTGGCGAGGGGATCAGGCAATCCCTGGCGCCCCTGACGTTATCAACCTGCTCAAGAAGAATGGAAAGAAAGTGTTTTTCGTCACCAACAACAGCACTAAAACTAGAAAGATGTATGCAGACAAAATGGCATTGATGGGATTCAACGCAACTGAAGATGAAGTGTTTGGAACGGCATACTGCTCTGCAATGTACCTAAAACATGTCTCCAGACTACAGGGCAAAGTGTATCTCATAGGAAGCAATGCAATGAGGAAGGAACTAGAAAAGGTTGGGATCCAGCAGACAGGTGTGGGGCCTGATCCGATATCAGGTGTCCAGATCGATTGGGCAAATGTGCCCCTGGACCCTGAGGTGAAGGCTGTGGTTGTTGGGTTTGATGAGCACTTCAGTTACATGAAACTGAACAGAGCCCTACAGTACCTCAACAACCCTGACTGTCTACTGGTGGGAACCAACACTGACACCAGACTGCCCCTGGAAGGAGGCAAAGCTGTCCCAGGGACAGGCTGCATCCTGAAGGCTGTGGAGACCGCAGCCCAGCGCCAGGCCCAGACGGTGGGAAAGCCCAACCACTTCATGTACGACTGTGTGGCCAGCCAGTTCGGCCTGGACCGCACCCGCTGCCTCATGGTGGGGGACCGGTTGGACACGGACATCCTGCTGGGGTCCAACTGTGGCCTGAAGACCCTACTGACCCTGACCGGGGTGTCCACTGTGGCCGACGCTGAGGCCCATCAGGAGAGTGGCTGTCCAAAACGCCTTGGCATGGTGCCTGACTACTACGTAGAGAGTATTGCAGAACTCCTGCCTGCTCTACAAGGATAACCAGTAAAAAGAAAAATAGGTTTTTATCTCAATGAGACTTTAGCCTTGATAGATGATAATTAGATTAATATTGACTAATTATAAAGGACCGTTAAGGACTGTGTGCGTCTGAAAACCCAGGCTTGTTTCCGGATTACGGATGTGAAAATTCAGGAAGGTACAGAGAGTTAATCAACTGCTTCGATTATACTAAGACTGCAACAAAACAAACCTATATTAAAGTTATTTTAACTACAGTATGCTATGGCTGAATATGTATATTCAAGATATACAGCCGGTGTAGCCGACTCCTCatggagagctactgggtgtgcaagCCTTTGTTCCAGCCCTGCTGTAATGCACCACATAGATTCAGCAGCAAAAAAAGGAAACAAATAgtagggctggaacaaaagcctgcccagcacacccagtagctctccaggacgaGGGTAAGCCACTCCTGATTTCCAGTGTTGATAAATGGATTTCGATATTTTTTTTCAAAAGAGTTGTTCAGGAAATGGTAGTGAAGTATGTGCTGTGTGTTTGGGTGAAAAAGAAGAAGGGCTATGCAAGGCCTGTGTTCTTTGCTCAATATCCCTCTGTAGCAATGATCTCAAACACAGTCGGAGGAAATGTGTACACACTCCTTTTGGGTATTTCCCTCATCTGTGTGCATACATTTAAAATCACGTCACTCAATATTTATCTAAAGCAGAGAGCTATGCGGAAATACAGTAAACTGGAGTGCACTGACAATTCATCAGGAATTATATATCTTATGTTGTCCACTCTCATTCACTGTACCAATGCTGTGTTTATTGCCATTTACATTACCCATTCACGTGAGGAAGTATACATAAACTGGGTTATACTCTTATTGTATCCTGATGTATTGTAAATGTAAAAATAGAACTACCTTTTGTTCCCATTCAATTAGAAGGTTAGGGGTTTGCACAATAATCAAtgatcttgttaagtgtgttttAATGTAACATAATGTCAGTCTTCTTAGTAATTAAGGGTCTATAATACGTTAGATTGTCTGTACTGCCAATACAATAATCAAACTACTGTATCATCCTCTGTCCTTGAAAAAGTATTCGCCTTGACTCAAGTCAATCAAACactgataaaaaataaacatacctTTTCCAAAATTAAA

Function

symbol description
pgp Predicted to enable glycerol-3-phosphatase activity. Predicted to be active in cytoplasm. Is expressed in adaxial cell; otic placode; and somite. Orthologous to human PGP (phosphoglycolate phosphatase).

NR:

description
glycerol-3-phosphate phosphatase-like

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K19269 PGP, PGLP; phosphoglycolate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576135.2 True 2654 mRNA 0.44 2 22741022 22743986

Neighbor

gene id symbol gene type direction distance location
zdhhc4 zdhhc4 coding upstream 2499 22731330 ~ 22738523 (+)
arhgap17a arhgap17 coding upstream 49298 22642425 ~ 22691724 (+)
LOC110499168 LOC106589557 coding upstream 139481 22600486 ~ 22601541 (+)
LOC110499593 LOC106589557 coding upstream 149068 22591103 ~ 22591954 (+)
LOC118942010 LOC106589557 coding upstream 157355 22582816 ~ 22583667 (+)
bricd5 LOC106589562 coding downstream 238 22744224 ~ 22748899 (+)
tex2l LOC106589568 coding downstream 97282 22841268 ~ 22865328 (+)
LOC110499186 LOC106589571 coding downstream 170136 22914122 ~ 22916645 (+)
LOC110499185 LOC106589570 coding downstream 174898 22918884 ~ 22938915 (+)
baiap2l1a LOC106589578 coding downstream 459777 23203763 ~ 23252161 (+)
G1674664 LOC106609649 non-coding upstream 34753 22705560 ~ 22706269 (+)
G1674659 NA non-coding upstream 41878 22698933 ~ 22699144 (+)
G1674618 NA non-coding upstream 101098 22639554 ~ 22639924 (+)
G1674616 NA non-coding upstream 104131 22636657 ~ 22636891 (+)
G1674625 NA non-coding downstream 5099 22749085 ~ 22765432 (+)
G1674840 NA non-coding downstream 84581 22828567 ~ 22828796 (+)
G1674848 NA non-coding downstream 88133 22832119 ~ 22832340 (+)
G1674881 NA non-coding downstream 195323 22939309 ~ 22940706 (+)
G1674902 NA non-coding downstream 206400 22950386 ~ 22952493 (+)
LOC110513322 rsl1d1 other upstream 781395 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 895156 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 1290676 21444883 ~ 21450346 (+)
LOC110499100 LOC106589528 other upstream 1303641 21422168 ~ 21437402 (+)
G1673204 NA other upstream 1351244 21386329 ~ 21389778 (+)
LOC110499192 LOC106589579 other downstream 512818 23252800 ~ 23269058 (+)
faap100 faap100 other downstream 836044 23576429 ~ 23582556 (+)
G1677419 LOC100194703 other downstream 2338678 25082664 ~ 25083277 (+)
G1677738 NA other downstream 2892705 25636691 ~ 25641614 (+)
G1678963 NA other downstream 3718208 26462194 ~ 26467953 (+)

Expression


Co-expression Network