msrb1b (LOC100705913)


Basic Information

Item Value
gene id msrb1b
gene name LOC100705913
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22835823 ~ 22837899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956014.1
GAAGCTTATCTTGTAGCCCGATCCATTCTGTGCTGGCAGTCTATTTAAGTGGCGCTGTCAAAGCTCATCTCCACAAATAGTGTTCTTCCTTTACATTCAGAATGTCTTTTTGCTCATTTTTTGATGGCGAGGTCTATAAAGACCATTTCAAACCAGgtatgtatgtgtgttctcAGTGCAACAACCCGCTGTTCTCCAGCAGGTCTAagttcctccactcctccccgtGGCCTGCCTTCACTGAGACCATCAAAGAGGACAGTGTCACCAAGATGATGGAGTCACTCACAGCCTTCAAGGTGCTTTGTGGGAAGTGTGGTAACGGACTAGGCCATGAGTTTGTCAACGACGGTCCGGAGGAAGGTATCTCACGATTCTGAATATTCAGCAACTCGCTCAAGTTTGTCCCAAATAAAGACAAACAGTAAGTCGAGTTGAGGAGCCCAAGCAGGTAGCTGTAGCCTCACATCACAGCCCTGTGTAAGGGACTGGTCAGTATGTGACGTGGACAGGAACAAGGCCCAGGAGGGACACCCTGTACACTGATGACTCTATGACCAGCCTGGAATACAGGGACACTCTAGAGAAACATTATTTTCCCCCAAGATAGTTGTTCTATAGACGTGGTAGTGTTTTTCAGTGCATCACAGATCTAAAGGCATTCCTTGAAAACCTCTTATAATAAGCATGCAGATCTAGTTCATCTTTAAGATATAGGTTACATTAAGATATAGGTTACGTTAAGATATAGGTTACGTTAAGATATAAGCCTATGGTGGATTATATGCTTTTTATGCTAAGCTGCATTCCATTGCTTTGTAGCAGTTCAAGCATGTGAAGCaattagagtttttttttttgtattttagttatttgattatttatttgaatataCTTACCATGTATTCTGTAAGGAGGGGACACAGTTGGTGCAAGGTGTCATGTTCTTGAAAAAAACTCTCACTGCAATTTAGCCAAAGACATACGCAGGCTTGCTATCACATCTATGCATTTGATGTACATGTATACTACTCATTGAAATATCACTTCCTTATATTATGTAGATAAATATTGAACAATTAGCTGAATTTCGGGTTGTATGGACCATTTGTGATTTAACATTGCTACAGTATATTTGCACATTGAGCCATGTGAAATGGCATACTTGAATTGACTAGCATGATTGCTTATTATTTATATGATCTCGTATGTCATTTATGACTTGGAGTCTTCTGTTGTGTGATTCCCATGACATTCTTTTAATTAATACATGTTCTAACTGGCAATGCAAATGGAATAAACAATGATTTTTCTGGTATTAATACAATTGCACTGATGAAATGCAGATGCTTTGTTTATCGGTCATGATTCTATTATATTGATAACAATAAATTACTATAGTTTACTAAAACCA
>TU1916236
CGATCCATTCTGTGCTGGCAGTCTATTTAAGTGGCGCTGTCAAAGCTCATCTCCACAAATAGTGTTCTTCCTTTACATTCAGAATGTCTTTTTGCTCATTTTTTGATGGCGAGGTCTATAAAGACCATTTCAAACCAGgtatgtatgtgtgttctcAGTGCAACAACCCGCTGTTCTCCAGCAGGTCTAagttcctccactcctccccgtGGCCTGCCTTCACTGAGACCATCAAAGAGGACAGTGTCACCAAGATGATGGAGTCACTCACAGCCTTCAAGGTGCTTTGTGGGAAGTGTGGTAACGGACTAGGCCATGAGTTTGTCAACGACGGTCCGGAGGAAGGTATCTCACGATTCTGAATATTCAGCAACTCGCTCAAGTTTGTCCCAAATAAAGACAAACAGTAAGTCGAGTTGAGGAGCCCAAGCAGGTAGCTGTAGCCTCACATCACAGCCCTGTGTAAGGGACTGGTCAGTATGTGACGTGGACAGGAACAAGGCCCAGGAGGGACACCCTGTACACTGATGACTCTATGACCAGCCTGGAATACAGGGACACTCTAGAGAAACATTATTTTCCCCCAAGATAGTTGTTCTATAGACGTGGTAGTGTTTTTCAGTGCATCACAGATCTAAAGGCATTCCTTGAAAACCTCTTATAATAAGCATGCAGATCTAGTTCATCTTTAAGATATAGGTTACATTAAGATATAGGTTACGTTAAGATATAGGTTACGTTAAGATATAAGCCTATGGTGGATTATATGCTTTTTATGCTAAGCTGCATTCCATTGCTTTGTAGCAGTTCAAGCATGTGAAGCaattagagtttttttttttgtattttagttatttgattatttatttgaatataCTTACCATGTATTCTGTAAGGAGGGGACACAGTTGGTGCAAGGTGTCATGTTCTTGAAAAAAACTCTCACTGCAATTTAGCCAAAGACATACGCAGGCTTGCTATCACATCTATGCATTTGATGTACATGTATACTACTCATTGAAATATCACTTCCTTATATTATGTAGATAAATATTGAACAATTAGCTGAATTTCGGGTTGTATGGACCATTTGTGATTTAACATTGCTACAGTATATTTGCACATTGAGCCATGTGAAATGGCATACTTGAATTGACTAGCATGATTGCTTATTATTTATATGATCTCGTATGTCATTTATGACTTGGAGTCTTCTGTTGTGTGATTCCCATGACATTCTTTTAATTAATACATGTTCTAACTGGCAATGCAAATGGAATAAACAATGATTTTTCTGGTATTAATACAATTGCACTGATGAAATGCAGATGCTTTGTTTATCGGTCATGATTCTATTATATTGATAACAATAAATTACTATAGTTTACTAAAACCA

Function

NR:

description
PREDICTED: methionine-R-sulfoxide reductase B1-A-like

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030091 protein repair biological_process
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956014.1 False 1414 mRNA 0.39 4 22835823 22837899
TU1916236 True 1396 TUCP 0.39 4 22835823 22837881

Neighbor

gene id symbol gene type direction distance location
LOC110499179 LOC106589565 coding downstream 23059 22789760 ~ 22812764 (-)
LOC110499175 mlst8 coding downstream 78124 22749079 ~ 22757699 (-)
LOC110499178 NA coding downstream 95896 22738889 ~ 22739927 (-)
grid2ipb LOC106589205 coding downstream 120212 22700421 ~ 22715611 (-)
lcmt1 lcmt1 coding downstream 196134 22629527 ~ 22639689 (-)
neurl2 neurl2 coding upstream 234 22838133 ~ 22839722 (-)
LOC110499594 NA coding upstream 27794 22865693 ~ 22874176 (-)
LOC110499182 LOC106589248 coding upstream 39530 22877429 ~ 22887744 (-)
LOC110499187 LOC106589573 coding upstream 72334 22910233 ~ 22914017 (-)
LOC110499183 LOC106589569 coding upstream 90230 22928129 ~ 22930446 (-)
G1674850 NA non-coding downstream 2752 22832845 ~ 22833071 (-)
G1674849 NA non-coding downstream 3079 22832443 ~ 22832744 (-)
G1674847 NA non-coding downstream 4051 22831445 ~ 22831772 (-)
G1674799 NA non-coding downstream 58484 22777103 ~ 22777339 (-)
G1674788 NA non-coding downstream 83615 22751833 ~ 22752208 (-)
G1675801 LOC107699850 non-coding upstream 24582 22857113 ~ 22864346 (-)
G1675825 NA non-coding upstream 55950 22893849 ~ 22901198 (-)
G1675842 NA non-coding upstream 79624 22917523 ~ 22918520 (-)
G1675872 NA non-coding upstream 145676 22983575 ~ 22983703 (-)
G1674592 NA other downstream 234275 22591570 ~ 22601548 (-)
G1674481 LOC106613263 other downstream 438600 22396909 ~ 22397223 (-)
LOC110499164 litaf other downstream 441261 22391641 ~ 22395025 (-)
LOC118942052 mkl2 other downstream 447345 22386323 ~ 22391573 (-)
G1674299 NA other downstream 504017 22331350 ~ 22331806 (-)
LOC118942011 NA other upstream 357066 23192192 ~ 23204089 (-)
G1676051 ccz1 other upstream 491998 23329897 ~ 23332080 (-)
rpl38 NA other upstream 1569560 24407459 ~ 24412883 (-)
G1676904 NA other upstream 1800444 24638343 ~ 24638701 (-)

Expression


Co-expression Network