LOC110499218 (rac3)


Basic Information

Item Value
gene id LOC110499218
gene name rac3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23972492 ~ 23977455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576210.2
CTGGCGCCACTCTTCATCGACCCCCTTTCACTGCGGCTCAAAAGCTGAGCGGACTGGCCCGCTTCTCATACAAATCACAGCTAGCTTTCattgtgaaatatatatttttaaaaacactTCTTTCGGCTTTGTGACACCGCCTGCTCCTTCGCAAATGCAAGCAATTAAATGCGTGGTGGTCGGCGACGGGGCCGTGGGTAAGACCTGTCTGCTGATCAGCTACACCACCAATGCCTTCCCCGGAGAGTACATACCCACtgtCTTTGACAACTACTCTGCCAATGTGATGGTAGATGGGAAACCAGTGAATCTGGGTCTATGGGATACAGCAGGACAGGAAGACTACGACAGACTCAGACCACTGTCCTATCCACAGacgGATGTGTTCTTGATATGCTTCTCCTTGGTCAGCCCGGCCTCCTTTGAGAACGTCCGAGCTAAGTGGTACCCTGAAGTGAGACACCACTGCCCCAACACCCCAATCATCCTGGTGGGCACCAAGCTGGATCTGAGAGATGACAAGGACACCATCGAAAGGCTGAGGGACAAGAAGCTGTCCCCCATCACCTACCCCCAGGGTCTGGCCATGGCACGGGAGATAGGTCAGTGCTGTGAAGTACCTGGAGTGCTCTGCCCTGACCCAGCGAGGGTTGAAGACTGTGTTTGACGAGGCCATCCGCGCCGTGCTCTGCCCCCCACCCGTCAAGAAGAGGGGCAAGAGGTGCACCGTGTTCTGAGGGCTCTCATTGGTCCAGGAGAAACAGCCAATATGGCGGCCATTGTCTGGTACTACTAAAACATCACCATAATGACCACTACTTCTCTTCGGGACGAATCTTGACTTGAGACACCACGTAACGGCAATTTAACTGATGTTTGTGTAAATAACACATTCATGTCAATGGAATATTTGATCTTAAGTTAGGATTTGGCCCGAAGAGAAAGAGAATTActggactttttttttttacagtgggaAAACGATTTGATCTGGTGTAAAGATATGCGTCGTCAAGTTTCCATTTGTCTGTTTTCCACAGAGGAAAGTACTCCTCTGTGGACAGTTAAAGTGTCTACTCTCACTCATACAACCCTCATCCCTCTCAGTCTTGTTTGCTTGAGTTGATACAGCACTCAAAACAGCCTGTACTGTGAATATGTGGCTCTGGGTTGAAGTTGCCCTTagttacagatctaggatcagcgtaCCCACCTCAAATCCTAACCTTCACCATTACGGggagaaaaaaacacaaaactgaccttagatcagtgtttaGGGTCAATTTCACCCTACTCTGTGAAGTGAATAATGTGATAAACAGACAAGCATGCCAAAAGTGGGGGCTGTACAACCTTGCTGCCTGAGTAATGCCTCTGATGGAGGTGCCTGCATGGGTCTAAACAATCTGTCTTCATTTTCCCAACGTCCTTTGTATATGTTCATTTGcgcgtgtgggtgggtgtgtgtgggagtgtgtgtgtgtgtgttcgcatgtcactgtatgtgtgagagagtaaAGTTTCAAGCAGTGTCAAGTTTTTGGTACTATTTCGTATTGTAGTGATACACAAGACTTTGCAACAAACTGTCGACTCAAAAAAAGAAAAGGGAAATGGACGATCACAATCGTGGTCTGTTTTATGTGTTAACCAAACTAAGTCTagtaacgtttaaaaaaataaaataaaaaaaccttTGGAGGAGGAATTAATTATGgatatatctatttattatgtACCTGAATATTTAACTCTTTAATTCCAGACAATTCAAAATAAAAGGATAATAGTAACTCACTTTGACTCTAGGAGGTATCATATTGCAAACATATATAATTAATTAACCAGTGCATTTCTGTGGTGGTTGTGGACCTGCAGTATAACTGTATGTCCCACTCTGGTGGTGAGATACAGAACTGCAGTCTTCTCTGTCATGACGTTAGTGGTTGGCATAGCAACTGTGGTTGAATAATGTGTCTCTGAGCCTGTCCAAGGTGTCAATACTGGCTTTGGGTAGAAGTTTTCCTCAggagcagatctaggatcagcttaccactactcaatcctaaccttaaccattagggggGATTTGCAAAACTGGTCTTAGATCAGTGTCAAGGGGTAACTTCATCCTATTCCTCAATACTGTAGATCAGAATTCTGAAAAGctactaaaactactactgcATGGATATGAACTGGTGATTCGAGCCCATTGTTATTAAGAAGAAAGCTTTTTTTAATGCACTGGCAATGTACTGTAAGATGACTTGTATAATGGTTTAATTGTTTGTCTTATTTTTTATGACTTCACATGTCAGTGTCGTGATATCTTTCAATTTtgtataataaatacaaatgtatatGTAACAGGT
>XM_021576209.2
GGCGCCACTCTTCATCGACCCCCTTTCACTGCGGCTCAAAAGCTGAGCGGACTGGCCCGCTTCTCATACAAATCACAGCTAGCTTTCattgtgaaatatatatttttaaaaacactTCTTTCGGCTTTGTGACACCGCCTGCTCCTTCGCAAATGCAAGCAATTAAATGCGTGGTGGTCGGCGACGGGGCCGTGGGTAAGACCTGTCTGCTGATCAGCTACACCACCAATGCCTTCCCCGGAGAGTACATACCCACtgtCTTTGACAACTACTCTGCCAATGTGATGGTAGATGGGAAACCAGTGAATCTGGGTCTATGGGATACAGCAGGACAGGAAGACTACGACAGACTCAGACCACTGTCCTATCCACAGacgTGGTACCCTGAAGTGAGACACCACTGCCCCAACACCCCAATCATCCTGGTGGGCACCAAGCTGGATCTGAGAGATGACAAGGACACCATCGAAAGGCTGAGGGACAAGAAGCTGTCCCCCATCACCTACCCCCAGGGTCTGGCCATGGCACGGGAGATAGGTGCTGTGAAGTACCTGGAGTGCTCTGCCCTGACCCAGCGAGGGTTGAAGACTGTGTTTGACGAGGCCATCCGCGCCGTGCTCTGCCCCCCACCCGTCAAGAAGAGGGGCAAGAGGTGCACCGTGTTCTGAGGGCTCTCATTGGTCCAGGAGAAACAGCCAATATGGCGGCCATTGTCTGGTACTACTAAAACATCACCATAATGACCACTACTTCTCTTCGGGACGAATCTTGACTTGAGACACCACGTAACGGCAATTTAACTGATGTTTGTGTAAATAACACATTCATGTCAATGGAATATTTGATCTTAAGTTAGGATTTGGCCCGAAGAGAAAGAGAATTActggactttttttttttacagtgggaAAACGATTTGATCTGGTGTAAAGATATGCGTCGTCAAGTTTCCATTTGTCTGTTTTCCACAGAGGAAAGTACTCCTCTGTGGACAGTTAAAGTGTCTACTCTCACTCATACAACCCTCATCCCTCTCAGTCTTGTTTGCTTGAGTTGATACAGCACTCAAAACAGCCTGTACTGTGAATATGTGGCTCTGGGTTGAAGTTGCCCTTagttacagatctaggatcagcgtaCCCACCTCAAATCCTAACCTTCACCATTACGGggagaaaaaaacacaaaactgaccttagatcagtgtttaGGGTCAATTTCACCCTACTCTGTGAAGTGAATAATGTGATAAACAGACAAGCATGCCAAAAGTGGGGGCTGTACAACCTTGCTGCCTGAGTAATGCCTCTGATGGAGGTGCCTGCATGGGTCTAAACAATCTGTCTTCATTTTCCCAACGTCCTTTGTATATGTTCATTTGcgcgtgtgggtgggtgtgtgtgggagtgtgtgtgtgtgtgttcgcatgtcactgtatgtgtgagagagtaaAGTTTCAAGCAGTGTCAAGTTTTTGGTACTATTTCGTATTGTAGTGATACACAAGACTTTGCAACAAACTGTCGACTCAAAAAAAGAAAAGGGAAATGGACGATCACAATCGTGGTCTGTTTTATGTGTTAACCAAACTAAGTCTagtaacgtttaaaaaaataaaataaaaaaaccttTGGAGGAGGAATTAATTATGgatatatctatttattatgtACCTGAATATTTAACTCTTTAATTCCAGACAATTCAAAATAAAAGGATAATAGTAACTCACTTTGACTCTAGGAGGTATCATATTGCAAACATATATAATTAATTAACCAGTGCATTTCTGTGGTGGTTGTGGACCTGCAGTATAACTGTATGTCCCACTCTGGTGGTGAGATACAGAACTGCAGTCTTCTCTGTCATGACGTTAGTGGTTGGCATAGCAACTGTGGTTGAATAATGTGTCTCTGAGCCTGTCCAAGGTGTCAATACTGGCTTTGGGTAGAAGTTTTCCTCAggagcagatctaggatcagcttaccactactcaatcctaaccttaaccattagggggGATTTGCAAAACTGGTCTTAGATCAGTGTCAAGGGGTAACTTCATCCTATTCCTCAATACTGTAGATCAGAATTCTGAAAAGctactaaaactactactgcATGGATATGAACTGGTGATTCGAGCCCATTGTTATTAAGAAGAAAGCTTTTTTTAATGCACTGGCAATGTACTGTAAGATGACTTGTATAATGGTTTAATTGTTTGTCTTATTTTTTATGACTTCACATGTCAGTGTCGTGATATCTTTCAATTTtgtataataaatacaaatgtatatGTAACAGGT
>XM_021576208.2
CCACTCTTCATCGACCCCCTTTCACTGCGGCTCAAAAGCTGAGCGGACTGGCCCGCTTCTCATACAAATCACAGCTAGCTTTCattgtgaaatatatatttttaaaaacactTCTTTCGGCTTTGTGACACCGCCTGCTCCTTCGCAAATGCAAGCAATTAAATGCGTGGTGGTCGGCGACGGGGCCGTGGGTAAGACCTGTCTGCTGATCAGCTACACCACCAATGCCTTCCCCGGAGAGTACATACCCACtgtCTTTGACAACTACTCTGCCAATGTGATGGTAGATGGGAAACCAGTGAATCTGGGTCTATGGGATACAGCAGGACAGGAAGACTACGACAGACTCAGACCACTGTCCTATCCACAGacgGATGTGTTCTTGATATGCTTCTCCTTGGTCAGCCCGGCCTCCTTTGAGAACGTCCGAGCTAAGTGGTACCCTGAAGTGAGACACCACTGCCCCAACACCCCAATCATCCTGGTGGGCACCAAGCTGGATCTGAGAGATGACAAGGACACCATCGAAAGGCTGAGGGACAAGAAGCTGTCCCCCATCACCTACCCCCAGGGTCTGGCCATGGCACGGGAGATAGGTGCTGTGAAGTACCTGGAGTGCTCTGCCCTGACCCAGCGAGGGTTGAAGACTGTGTTTGACGAGGCCATCCGCGCCGTGCTCTGCCCCCCACCCGTCAAGAAGAGGGGCAAGAGGTGCACCGTGTTCTGAGGGCTCTCATTGGTCCAGGAGAAACAGCCAATATGGCGGCCATTGTCTGGTACTACTAAAACATCACCATAATGACCACTACTTCTCTTCGGGACGAATCTTGACTTGAGACACCACGTAACGGCAATTTAACTGATGTTTGTGTAAATAACACATTCATGTCAATGGAATATTTGATCTTAAGTTAGGATTTGGCCCGAAGAGAAAGAGAATTActggactttttttttttacagtgggaAAACGATTTGATCTGGTGTAAAGATATGCGTCGTCAAGTTTCCATTTGTCTGTTTTCCACAGAGGAAAGTACTCCTCTGTGGACAGTTAAAGTGTCTACTCTCACTCATACAACCCTCATCCCTCTCAGTCTTGTTTGCTTGAGTTGATACAGCACTCAAAACAGCCTGTACTGTGAATATGTGGCTCTGGGTTGAAGTTGCCCTTagttacagatctaggatcagcgtaCCCACCTCAAATCCTAACCTTCACCATTACGGggagaaaaaaacacaaaactgaccttagatcagtgtttaGGGTCAATTTCACCCTACTCTGTGAAGTGAATAATGTGATAAACAGACAAGCATGCCAAAAGTGGGGGCTGTACAACCTTGCTGCCTGAGTAATGCCTCTGATGGAGGTGCCTGCATGGGTCTAAACAATCTGTCTTCATTTTCCCAACGTCCTTTGTATATGTTCATTTGcgcgtgtgggtgggtgtgtgtgggagtgtgtgtgtgtgtgttcgcatgtcactgtatgtgtgagagagtaaAGTTTCAAGCAGTGTCAAGTTTTTGGTACTATTTCGTATTGTAGTGATACACAAGACTTTGCAACAAACTGTCGACTCAAAAAAAGAAAAGGGAAATGGACGATCACAATCGTGGTCTGTTTTATGTGTTAACCAAACTAAGTCTagtaacgtttaaaaaaataaaataaaaaaaccttTGGAGGAGGAATTAATTATGgatatatctatttattatgtACCTGAATATTTAACTCTTTAATTCCAGACAATTCAAAATAAAAGGATAATAGTAACTCACTTTGACTCTAGGAGGTATCATATTGCAAACATATATAATTAATTAACCAGTGCATTTCTGTGGTGGTTGTGGACCTGCAGTATAACTGTATGTCCCACTCTGGTGGTGAGATACAGAACTGCAGTCTTCTCTGTCATGACGTTAGTGGTTGGCATAGCAACTGTGGTTGAATAATGTGTCTCTGAGCCTGTCCAAGGTGTCAATACTGGCTTTGGGTAGAAGTTTTCCTCAggagcagatctaggatcagcttaccactactcaatcctaaccttaaccattagggggGATTTGCAAAACTGGTCTTAGATCAGTGTCAAGGGGTAACTTCATCCTATTCCTCAATACTGTAGATCAGAATTCTGAAAAGctactaaaactactactgcATGGATATGAACTGGTGATTCGAGCCCATTGTTATTAAGAAGAAAGCTTTTTTTAATGCACTGGCAATGTACTGTAAGATGACTTGTATAATGGTTTAATTGTTTGTCTTATTTTTTATGACTTCACATGTCAGTGTCGTGATATCTTTCAATTTtgtataataaatacaaatgtatatGTAACAGGT

Function

symbol description
rac3 Enables GTPase activity and calcium-dependent protein binding activity. Involved in several processes, including Wnt signaling pathway; cell projection assembly; and positive regulation of cell adhesion. Located in several cellular components, including growth cone; neuronal cell body; and perinuclear region of cytoplasm. Part of filamentous actin.

NR:

description
PREDICTED: ras-related C3 botulinum toxin substrate 3 isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04392 RAC1; Ras-related C3 botulinum toxin substrate 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576210.2 False 2378 mRNA 0.44 6 23972492 23977455
XM_021576209.2 False 2309 mRNA 0.44 5 23972494 23977455
XM_021576208.2 True 2368 mRNA 0.44 6 23972498 23977455

Neighbor

gene id symbol gene type direction distance location
lrrc45 lrrc45 coding upstream 8034 23946660 ~ 23964458 (+)
prkar1ab prkar1a coding upstream 66677 23894637 ~ 23905815 (+)
LOC110499210 arsg coding upstream 85072 23870490 ~ 23887420 (+)
LOC118942054 NA coding upstream 108321 23859982 ~ 23864171 (+)
LOC110499213 LOC106589601 coding upstream 118608 23846856 ~ 23853884 (+)
LOC110499226 gps1 coding downstream 43232 24020687 ~ 24090566 (+)
slc16a3 LOC106610249 coding downstream 168610 24146065 ~ 24169492 (+)
LOC118942055 NA coding downstream 206104 24183559 ~ 24189459 (+)
LOC110499595 NA coding downstream 652088 24629543 ~ 24632101 (+)
sdk2b sdk2 coding downstream 915475 24892930 ~ 25354425 (+)
G1675487 NA non-coding upstream 2621 23969348 ~ 23969871 (+)
G1675442 NA non-coding upstream 5172 23964484 ~ 23967320 (+)
G1675471 NA non-coding upstream 35933 23936345 ~ 23936559 (+)
G1675469 NA non-coding upstream 37656 23934419 ~ 23934836 (+)
G1675465 NA non-coding upstream 43786 23928490 ~ 23928706 (+)
G1675488 NA non-coding downstream 853 23978308 ~ 23978530 (+)
G1675489 NA non-coding downstream 1956 23979411 ~ 23979626 (+)
G1675490 NA non-coding downstream 2428 23979883 ~ 23980087 (+)
G1675497 NA non-coding downstream 19597 23997052 ~ 23999931 (+)
faap100 faap100 other upstream 391060 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 714423 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 2012865 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 2126626 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 2522146 21444883 ~ 21450346 (+)
G1677419 LOC100194703 other downstream 1105209 25082664 ~ 25083277 (+)
G1677738 NA other downstream 1659236 25636691 ~ 25641614 (+)
G1678963 NA other downstream 2484739 26462194 ~ 26467953 (+)
LOC110499256 LOC106589642 other downstream 2654680 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 other downstream 2677172 26654584 ~ 26656111 (+)

Expression


Co-expression Network