LOC110499226 (gps1)


Basic Information

Item Value
gene id LOC110499226
gene name gps1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24020687 ~ 24090566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956051.1
TGTGATAGCGAGCCGTTGTTTGTTGCTGTAGACTCAGATTATCCATCatattacattttagtcatttaaaatACACTCTTATCTAGAGCTATTTACAGTAGCGAGTGGATACATTGTACATTTTTCTGGTCCCACATGGGAAtaaaacccacaaccctggcgttgcaagcgccatgctcttcCAACTGAAACACGGGACCATATCGACCAGTTAATCGACTGGCTGCTCCAACAATGACAATAAATGTCTTCAGAAATGGAAGGCAGTCTGGAGaaggcaagatcaggtgggacaattctagccaatgagaggacaGATACGAGTGTGATAACAGGCACAAAtccgatataaagtgtttttttttcctcAAACTTGGCAGGATATCATGtatcctacttatatcagtacactcgtaacaacCGGGaaaaacgccacctgctggagaagacagatttaGGTCCCAGTTATCCGTCTCGCTTCGCTTCTTCCTCTCTGCCGCTGAACGTCACAGACCGTGAAAGATGCCTTTGCCCGTGCAAGTATTCAACTTTCAGGGGGTTGTTGAGCCCATGCAGATAGATGCTGACCCACAGGAGGACCAGCAGAATGCACCAGATGTCAACTATGTGGTGGAAAACCCCACGCTGgaCCTGGAGCAATATGCATCCAGCTACTGTGGTCTGATGCGTATTGAGAGGCTGCAGTTCATTGCAGAGCACTGTCCCCAGCTCCGCGCCGAGGCCCTGAAGATGGCCCTGTCTTTTGTCCACAGGACCTTCAACGTAGACGTGTATGAGGAGATCCACCGCAAGCTCACAGAGGCCACCAGagagGTCCAGGGGGCTCCAGATGCTGCGGTGGAGGGCGGGGCAGTTGAACCCCCTCCTCTGGACACAGCGTGGGCCGAGTCGACCAGGAAAAAGGCCCTGCTCAAACTGGAGAAATTGGACACTGACCTGAAGAACTACAAAGGCAACTCCATCAAAGAGAGCATCAGGAGGGGTCATGATGACCTTGGGGACCACTACTTGGACTGCGGTGATCTCAGCAACGCCCTTAAGTGCTACTCCCGAGCCCGAGACTACTGCACTAGCGCCAAGCATGTCATAAACATGTGTCTTAATGTCATCAAGGTTAGCGTCTACCTCCAGAACTGGTCCCACGTCCTTAGCTATGTGAGCAAAGCTGAATCCACTCCGGAGATAGCAGAGcaaagaggggagagagattgcCAGAGTCAGTCAGTCCTCACCAAATTAAAATGTGCTGCAGGCCTAGCTGAGCTGGCCTCCAGAAAGTACAAACAAGCAGCCAAGTGCTTCCTGCTGGCCTCTTTCGACCACTGTGACTTTGCTGAGCTCCTGTCCCCCAGCAATGTAGCTGTGTACGGAGGGATGTGTGCCCTCGCCACCTTCGACAGACAGGAGCTACAGAAGAACGTAATCTCAAGCAGCTCCTTTAAATTATTCTTAGAGTTGGAGCCTCAGGTCCGTGACATCATCTTTAAGTTCTATGAGTCAAAGTACGCTTCCTGTCTCAAAATGCTGGATGAGATCAAGGATAACCTGCTGTTAGACATGTACCTGGCCCCCCACGTACTGACCCTCTACACACTGATCAGGAACAGAGCCCTTATACAGtacTTCAGCCCGTACGTGTCTGCAGACATGACTAAGATGGCCCAGGCCTTCAACACCACGGTGCTAGCTCTGGAAGACGAACTCACCCAGCTCATACTGGAGGGACTTATCAATGCACGCATAGACTCCCATAGCAAGATCCTGTATGCGCGTGACGTGGACCAGCGGAGCCACACATTTGAGAAGTCTATCCACATGGGCAAGGAGTTCCAGAGGCGAGCCAAAGCCATGATCTTGCGAGCTGCTGTGCTGCGCAACCAGATACACGTCAAGtctcctccCAGGGAGGGCAGCCAAGGTGAACTCAACTCTGCCAACAGCCAATCACgaatgagcaccaacatgtgaacaTTCCCATGAGACCTCTGTCTTACAGGAAGTTACcatgtcagggggggggggggggtctgccaGGGGGAcctagcacccccccccccccccccccccccccccccatctgaggATCCCCCTCCTCCTGCTGACTCAGTGCTGCATCTTTTGCCTGCAGAAAGAAAAATACTGAGACGTCAACTTCAATAGGCTGTGTCTTAAATGGTgcccctattcac
>XM_036956052.1
TGTGATAGCGAGCCGTTGTTTGTTGCTGTAGACTCAGATTATCCATCatattacattttagtcatttaaaatACACTCTTATCTAGAGCTATTTACAGTAGCGAGTGGATACATTGTACATTTTTCTGGTCCCACATGGGAAtaaaacccacaaccctggcgttgcaagcgccatgctcttcCAACTGAAACACGGGACCATATCGACCAGTTAATCGACTGGCTGCTCCAACAATGACAATAAATGTCTTCAGAAATGGAAGGCAGTCTGGAGaaggcaagatcagCGGGaaaaacgccacctgctggagaagacagatttaGGTCCCAGTTATCCGTCTCGCTTCGCTTCTTCCTCTCTGCCGCTGAACGTCACAGACCGTGAAAGATGCCTTTGCCCGTGCAAGTATTCAACTTTCAGGGGGTTGTTGAGCCCATGCAGATAGATGCTGACCCACAGGAGGACCAGCAGAATGCACCAGATGTCAACTATGTGGTGGAAAACCCCACGCTGgaCCTGGAGCAATATGCATCCAGCTACTGTGGTCTGATGCGTATTGAGAGGCTGCAGTTCATTGCAGAGCACTGTCCCCAGCTCCGCGCCGAGGCCCTGAAGATGGCCCTGTCTTTTGTCCACAGGACCTTCAACGTAGACGTGTATGAGGAGATCCACCGCAAGCTCACAGAGGCCACCAGagagGTCCAGGGGGCTCCAGATGCTGCGGTGGAGGGCGGGGCAGTTGAACCCCCTCCTCTGGACACAGCGTGGGCCGAGTCGACCAGGAAAAAGGCCCTGCTCAAACTGGAGAAATTGGACACTGACCTGAAGAACTACAAAGGCAACTCCATCAAAGAGAGCATCAGGAGGGGTCATGATGACCTTGGGGACCACTACTTGGACTGCGGTGATCTCAGCAACGCCCTTAAGTGCTACTCCCGAGCCCGAGACTACTGCACTAGCGCCAAGCATGTCATAAACATGTGTCTTAATGTCATCAAGGTTAGCGTCTACCTCCAGAACTGGTCCCACGTCCTTAGCTATGTGAGCAAAGCTGAATCCACTCCGGAGATAGCAGAGcaaagaggggagagagattgcCAGAGTCAGTCAGTCCTCACCAAATTAAAATGTGCTGCAGGCCTAGCTGAGCTGGCCTCCAGAAAGTACAAACAAGCAGCCAAGTGCTTCCTGCTGGCCTCTTTCGACCACTGTGACTTTGCTGAGCTCCTGTCCCCCAGCAATGTAGCTGTGTACGGAGGGATGTGTGCCCTCGCCACCTTCGACAGACAGGAGCTACAGAAGAACGTAATCTCAAGCAGCTCCTTTAAATTATTCTTAGAGTTGGAGCCTCAGGTCCGTGACATCATCTTTAAGTTCTATGAGTCAAAGTACGCTTCCTGTCTCAAAATGCTGGATGAGATCAAGGATAACCTGCTGTTAGACATGTACCTGGCCCCCCACGTACTGACCCTCTACACACTGATCAGGAACAGAGCCCTTATACAGtacTTCAGCCCGTACGTGTCTGCAGACATGACTAAGATGGCCCAGGCCTTCAACACCACGGTGCTAGCTCTGGAAGACGAACTCACCCAGCTCATACTGGAGGGACTTATCAATGCACGCATAGACTCCCATAGCAAGATCCTGTATGCGCGTGACGTGGACCAGCGGAGCCACACATTTGAGAAGTCTATCCACATGGGCAAGGAGTTCCAGAGGCGAGCCAAAGCCATGATCTTGCGAGCTGCTGTGCTGCGCAACCAGATACACGTCAAGtctcctccCAGGGAGGGCAGCCAAGGTGAACTCAACTCTGCCAACAGCCAATCACgaatgagcaccaacatgtgaacaTTCCCATGAGACCTCTGTCTTACAGGAAGTTACcatgtcagggggggggggggggtctgccaGGGGGAcctagcacccccccccccccccccccccccccccccatctgaggATCCCCCTCCTCCTGCTGACTCAGTGCTGCATCTTTTGCCTGCAGAAAGAAAAATACTGAGACGTCAACTTCAATAGGCTGTGTCTTAAATGGTgcccctattcac
>XM_021576220.2
ATGCCTTTGCCCGTGCAAGTATTCAACTTTCAGGGGGTTGTTGAGCCCATGCAGATAGATGCTGACCCACAGGAGGACCAGCAGAATGCACCAGATGTCAACTATGTGGTGGAAAACCCCACGCTGgaCCTGGAGCAATATGCATCCAGCTACTGTGGTCTGATGCGTATTGAGAGGCTGCAGTTCATTGCAGAGCACTGTCCCCAGCTCCGCGCCGAGGCCCTGAAGATGGCCCTGTCTTTTGTCCACAGGACCTTCAACGTAGACGTGTATGAGGAGATCCACCGCAAGCTCACAGAGGCCACCAGagagGTCCAGGGGGCTCCAGATGCTGCGGTGGAGGGCGGGGCAGTTGAACCCCCTCCTCTGGACACAGCGTGGGCCGAGTCGACCAGGAAAAAGGCCCTGCTCAAACTGGAGAAATTGGACACTGACCTGAAGAACTACAAAGGCAACTCCATCAAAGAGAGCATCAGGAGGGGTCATGATGACCTTGGGGACCACTACTTGGACTGCGGTGATCTCAGCAACGCCCTTAAGTGCTACTCCCGAGCCCGAGACTACTGCACTAGCGCCAAGCATGTCATAAACATGTGTCTTAATGTCATCAAGGTTAGCGTCTACCTCCAGAACTGGTCCCACGTCCTTAGCTATGTGAGCAAAGCTGAATCCACTCCGGAGATAGCAGAGcaaagaggggagagagattgcCAGAGTCAGTCAGTCCTCACCAAATTAAAATGTGCTGCAGGCCTAGCTGAGCTGGCCTCCAGAAAGTACAAACAAGCAGCCAAGTGCTTCCTGCTGGCCTCTTTCGACCACTGTGACTTTGCTGAGCTCCTGTCCCCCAGCAATGTAGCTGTGTACGGAGGGATGTGTGCCCTCGCCACCTTCGACAGACAGGAGCTACAGAAGAACGTAATCTCAAGCAGCTCCTTTAAATTATTCTTAGAGTTGGAGCCTCAGGTCCGTGACATCATCTTTAAGTTCTATGAGTCAAAGTACGCTTCCTGTCTCAAAATGCTGGATGAGATCAAGGATAACCTGCTGTTAGACATGTACCTGGCCCCCCACGTACTGACCCTCTACACACTGATCAGGAACAGAGCCCTTATACAGtacTTCAGCCCGTACGTGTCTGCAGACATGACTAAGATGGCCCAGGCCTTCAACACCACGGTGCTAGCTCTGGAAGACGAACTCACCCAGCTCATACTGGAGGGACTTATCAATGCACGCATAGACTCCCATAGCAAGATCCTGTATGCGCGTGACGTGGACCAGCGGAGCCACACATTTGAGAAGTCTATCCACATGGGCAAGGAGTTCCAGAGGCGAGCCAAAGCCATGATCTTGCGAGCTGCTGTGCTGCGCAACCAGATACACGTCAAGtctcctccCAGGGAGGGCAGCCAAGGTGAACTCAACTCTGCCAACAGCCAATCACgaatgagcaccaacatgtgaacaTTCCCATGAGACCTCTGTCTTACAGGAAGTTACcatgtcagggggggggggggggtctgccaGGGGGAcctagcacccccccccccccccccccccccccccccatctgaggATCCCCCTCCTCCTGCTGACTCAGTGCTGCATCTTTTGCCTGCAGAAAGAAAAATACTGAGACGTCAACTTCAATAGGCTGTGTCTTAAATGGTgcccctattcactatatagtgcaccacttttgaccagggcctatagagctctggtcaactagtgcacgatatagggaataagggagccattttggatgcacaAAGGACTCTGGTCATGTGGGAAGTGAACAGTGGTAGTCTGTGGAGATACTTGATGAGCAACCTGAGTGTGTTAATGTTGTATtggagaggctgtgtgtgtgagtgtttagaGTTGAGTGGCGCTCAGTCGCGTCACAGTACTGTCCTCTTTTTCCTAAGATGcacttttctctttctttcttttctttctcatGATTGATGTGATACATCCATTAAGAAATTAACAGAACACACACTTCAGAACCAATGTCCACAAGATCtgattttaaaataaatgtgTATGATAATCGGAA
>TU1916986
ctgaggATCCCCCTCCTCCTGCTGACTCAGTGCTGCATCTTTTGCCTGCAGAAAGAAAAATACTGAGACGTCAACTTCAATAGGCTGTGTCTTAAATGGTgcccctattcactatatagtgcaccacttttgaccagggcctatagagctctggtcaactagtgcacgatatagggaataagggagccattttggatgcacaAAGGACTCTGGTCATGTGGGAAGTGAACAGTGGTAGTCTGTGGAGATACTTGATGAGCAACCTGAGTGTGTTAATGTTGTATtggagaggctgtgtgtgtgagtgtttagaGTTGAGTGGCGCTCAGTCGCGTCACAGTACTGTCCTCTTTTTCCTAAGATGcacttttctctttctttcttttctttctcatGATTGATGTGATACATCCATTAAGAAATTAACAGAACACACACTTCAGAACCAATGTCCACAAGATCtgattttaaaataaatgtcggtctctta

Function

symbol description
gps1 Predicted to act upstream of or within protein deneddylation. Predicted to be located in cytoplasm. Predicted to be part of COP9 signalosome. Orthologous to human GPS1 (G protein pathway suppressor 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956051.1 False 2210 mRNA 0.52 15 24020687 24028498
XM_036956052.1 False 2076 mRNA 0.52 15 24020687 24028498
XM_021576220.2 False 2071 mRNA 0.52 14 24021330 24028881
TU1916986 True 490 lncRNA 0.43 2 24028387 24090566

Neighbor

gene id symbol gene type direction distance location
LOC110499218 rac3 coding upstream 43232 23972492 ~ 23977455 (+)
lrrc45 lrrc45 coding upstream 56229 23946660 ~ 23964458 (+)
prkar1ab prkar1a coding upstream 114872 23894637 ~ 23905815 (+)
LOC110499210 arsg coding upstream 133267 23870490 ~ 23887420 (+)
LOC118942054 NA coding upstream 156516 23859982 ~ 23864171 (+)
slc16a3 LOC106610249 coding downstream 117184 24146065 ~ 24169492 (+)
LOC118942055 NA coding downstream 154678 24183559 ~ 24189459 (+)
LOC110499595 NA coding downstream 600662 24629543 ~ 24632101 (+)
sdk2b sdk2 coding downstream 864049 24892930 ~ 25354425 (+)
cdc42ep4b cdc42ep4 coding downstream 1335934 25364815 ~ 25392592 (+)
G1675497 NA non-coding upstream 20756 23997052 ~ 23999931 (+)
G1675490 NA non-coding upstream 40600 23979883 ~ 23980087 (+)
G1675489 NA non-coding upstream 41061 23979411 ~ 23979626 (+)
G1675488 NA non-coding upstream 42157 23978308 ~ 23978530 (+)
G1675487 NA non-coding upstream 50816 23969348 ~ 23969871 (+)
G1675556 NA non-coding downstream 53469 24082350 ~ 24083181 (+)
G1675586 csnk1d non-coding downstream 150068 24178949 ~ 24179418 (+)
G1675585 csnk1d non-coding downstream 151478 24180359 ~ 24186488 (+)
G1675662 NA non-coding downstream 212486 24241367 ~ 24241730 (+)
G1676609 NA non-coding downstream 375571 24404452 ~ 24404811 (+)
faap100 faap100 other upstream 439255 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 762618 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 2061060 21936590 ~ 21959627 (+)
tnrc6b LOC106589538 other upstream 2174821 21806703 ~ 21848442 (+)
G1673231 LOC106589530 other upstream 2570341 21444883 ~ 21450346 (+)
G1677419 LOC100194703 other downstream 1053783 25082664 ~ 25083277 (+)
G1677738 NA other downstream 1607810 25636691 ~ 25641614 (+)
G1678963 NA other downstream 2433313 26462194 ~ 26467953 (+)
LOC110499256 LOC106589642 other downstream 2603254 26632095 ~ 26639269 (+)
LOC110499259 LOC106589644 other downstream 2625746 26654584 ~ 26656111 (+)
G1676610 NA non-coding downstream 314378 24404944 ~ 24405223 (+)

Expression


Co-expression Network