LOC110499245 (LOC106589628)


Basic Information

Item Value
gene id LOC110499245
gene name LOC106589628
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 25841005 ~ 25918436 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576252.2
CGGAAGTGATTCCCACGCTCAGACGAGGTCAAAATGGCGACTTGCTACATGTGAAGAGGACATAAGGGAGCCGGCTTTATGCTACAAAAACATGTACAAATCGACATGTAGCAGACTCACAGgTCTGGTTGGTGTGAGTGTGAACCAGAAACTATTTGGTAGAAATGCCATTAGAAATCACAAGAGTGCTCGCAGCCTCCTCCAGATGTCCAGGAGAGACCCATCACAATGGATTCACCACCTCAACTTCTTGAAGCGCCAGTATGTGATGAGGAGTAACAATGCCCTCTATCAGAGAGCTAAACCTAAGCAGACAGCCATCTTGACCGTCCTCGAGGACCATCGTGATGACGGCATGGACAGTCAGATCCGGCAAGTCCCAACCATCGACCATGTGCCTATGGTCACCGATGTCACACCACAGCCAGAGACCACAACCACAAATATGACTGCAACACCTGTCTCAAGTCCTGTCTCGACTGTGGTAGCACTTGCTGTGTTGAAACCTCCCTCCAGCAAGACTGTGTCACCACCACAGACAAAGGTTGTGTCCAGTGCAGCTGAGTCTGGGACTGAGATGTTAGAGGTGCCCCATGTGCAGGTGGAGTCTGATGAAGCCAGGGAGGCTCGGCTGGAGAGGCAGTGGAAGGAGCTCAAGGTGGACCTGGCTGAGCTTCCAGATGTGTACGCCAAACTTTCCAAAATCAAACTCACAGCGTTAGTAGTGTGGACGGCAGCAGCTGGTTTTGCCATGGCTCCAGTGCCCTTTGACCCTGCCACCTTCTTCCTGGCATCCCTCGGGACAGGGCTCGCCTCCTGCACTGCCAACTCCATCAACCAGtACTTTGAGGTGCCCTTTGACTCCAACATGAACCGCACAAAGAACCGGCCCCTGGTCAGGGGACAGATAAGTCCACTCCATGCGGTGGGCTTTGCCCTAGTCTGTGGTGTCCCTGGTATCACTTTGTTGACCCTGGCTGTGAACCCTCTAACAGGGGCCTTGGGGGCCCTCAACATCTTCCTCTACACCTGCTGTTACACACCCCTGAAGAGGCTCAGCATCATCAACACCTGGGTCGGGGCGGTGGTGGGGGCCATTCCCCCCATCATGGGCTGGACGGCCGCTACAGGTGCTCTGGACCCAGgTGCTCTGCTGCTGGGTGGCTTCCTGTACTGCTGGCAGTTTCCCCACTTCAACGCTTTGAGCTGGAACCTGCGTGAGGACTACTCCCGGGGAGGCTACCGTATGATGTCCGTCACCCACCCGGGCATGTGTAAGAGGGTGGCCCTGCGCCACAGCCTGGGTCTGATCGGTCTCTCGGCCCTGGGCCCTGTGCTGGACGTCACCACCTGGACCTTTCCTCTAGTCTCCCTGCCCATCAACCTCTACATCAGTTATCTGGCCTTCCGCTTCTACCAGAAGGGAGACCGCAGCTCCGCCCGCAAGCTCTTCTTCTGCAGTCTGTGGCACCTGCCTATGTTGTTGCTGCTGGCGCTCACCTGTAAGAAGTCCCGGACCGACAAAGAGGGCGTGGCCAAGACCTCGAGCCTAGCCCCAGCACCCCTGCCCCTCGCCGTGCAGAACTAGGATAGCCCGTTAGACCCCACCACCACATCCAACCTCCAACACACTGGCCATTACTTCTCCACCCACCCTTCGTACAAATGGAGGTATTACCTTACCATGtcttcctccctctgcctctgcaCCCTGAGAGAGGGGAGTACTAGggactgtgtgtatgtatgtctgtggaCTTGTGGTGGTCACCAACTGCACTCTCCATGCCCTCAAGACAAGGGGACGGGGTGGAAGCAACATGGCTGAAATGGTTGATCAATGAAAACCACACATTGTGAATTCCTGAAATAACTTCAGAGTGTAAGGAatcatttcagtgtgtgtgtatatatgtatttataatgGAAGGCTGCCCTCTAGTCCCTGTCCATGTTGTATATGACTGTTGTTAATAAGAACGTTGTACAGTGTAAATTGCTCCTATGGATTCGCAATTGGGCCCCAATCTTGAATAAAACCCATGCATTGTATCAACACAAGATGAAGTCAAGAAAGAATCGAGAGTGAACTGTGATGGACATGAAGACTTGTAAGATAAATGAGACAACAGTACATTGAGTTACGTCAATATttgttccatttttttttaaataatcgaTTAAGGAAATACGTTTTAAAGAAACCTAGCCACTGCACTGAAATGCAATGATAAGTTATTACTTGCCTATATGTTACTTGACTGTAACGATTGCCTATGCCTCTTGGTTTTAGCTGTTCAGCAATCTCAGTGGAGGGTATTCTTCTGTCTGCAACACACTGCTTTAACTCTACACGGTTCACCTGCACCAAAACAAAAGAGAAAAGTTAACTTGTAAACCATTTTTGTAAGACACAAAAATCATTACAAATGTTCTCTTACAATAAATGTCTTATGATTTAA

Function

NR:

description
protoheme IX farnesyltransferase, mitochondrial

GO:

id name namespace
GO:0006783 heme biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004659 prenyltransferase activity molecular_function

KEGG:

id description
K02257 COX10, ctaB, cyoE; heme o synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576252.2 True 2462 mRNA 0.51 7 25841005 25918436
Loading

Neighbor

gene id symbol gene type direction distance location
hs3st3b1b LOC106589627 coding downstream 4675 25807975 ~ 25836330 (-)
LOC118942473 NA coding downstream 235583 25605370 ~ 25605422 (-)
tekt3 tekt3 coding downstream 351376 25459179 ~ 25489629 (-)
pmp22b pmp22 coding downstream 395880 25430442 ~ 25445125 (-)
si:ch211-152f22.4 NA coding downstream 419936 25413124 ~ 25421069 (-)
fbxw10 cdrt1 coding upstream 290096 26208532 ~ 26229024 (-)
trnag-ccc-5 NA coding upstream 311440 26229876 ~ 26229946 (-)
LOC110499248 LOC100380747 coding upstream 316474 26234910 ~ 26261384 (-)
col1a1b col1a3 coding upstream 357718 26276154 ~ 26298481 (-)
si:ch1073-13h15.3 LOC107387676 coding upstream 441754 26360190 ~ 26365511 (-)
G1678517 NA non-coding downstream 47758 25792945 ~ 25793247 (-)
G1678443 NA non-coding downstream 169174 25671497 ~ 25671831 (-)
G1678429 NA non-coding downstream 199601 25637077 ~ 25641404 (-)
G1678428 NA non-coding downstream 205246 25635500 ~ 25635759 (-)
G1678423 NA non-coding downstream 216200 25623360 ~ 25624805 (-)
G1678623 NA non-coding upstream 54128 25972564 ~ 26067261 (-)
G1678695 NA non-coding upstream 172243 26090679 ~ 26090902 (-)
G1678704 LOC106613431 non-coding upstream 180288 26098724 ~ 26099140 (-)
G1678710 NA non-coding upstream 184324 26102760 ~ 26103242 (-)
G1678726 NA non-coding upstream 193848 26112284 ~ 26112543 (-)
G1678462 NA other downstream 135881 25704621 ~ 25705124 (-)
G1678242 cdc42ep4 other downstream 448429 25387881 ~ 25392576 (-)
G1677008 NA other downstream 1130507 24710125 ~ 24710498 (-)
G1676904 NA other downstream 1202304 24638343 ~ 24638701 (-)
rpl38 NA other downstream 1431486 24407459 ~ 24412883 (-)
G1680017 NA other upstream 1126346 27044782 ~ 27045294 (-)
G1680171 cog2 other upstream 1362387 27280823 ~ 27283995 (-)
sf3b5 sf3b5 other upstream 1463549 27381985 ~ 27384608 (-)

Expression

LOC110499245(LOC106589628) Expression in all Baseline Samples

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LOC110499245(LOC106589628) Expression in each Bioproject

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LOC110499245(LOC106589628) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network