si:ch211-216b21.2 (LOC106589629)


Basic Information

Item Value
gene id si:ch211-216b21.2
gene name LOC106589629
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 26003272 ~ 26050911 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576254.2
TAAGACATGCCCATCTTCCTCTCTGGAGTCATACAGAAGTTTGATACAACTGCCACGTGTTTAAAATGAAATAAAGGTGCTGAATTTATGCAACGTCATTTTAAACAACAAACAGTCTACATGTTGTATTCTCATCGTGGCTAGAGTACTGACAATGCTGTTTTGGCAATACATTATTGGTTTAATGCGAGAGAGCCATCCATTGACATTTAGAATTGCACTGCGTATTCAACTGTTTTCTGACGTTGAAGTAGACTTACAATATTATTTATTATAAGGACTTTAACAGCTCGAGCGCTGGGACACATGTGAGGGTTATTTTTGAGTGAGCCGCGTGCAAGGTCTAATCCACTGGTGGATGCGGAGCAAGCTCCGGTAGCCTACGAGCTGTCCCCTCTATTTCTTAATGGCAAGACCCGACAATGTCTGCCTAGCATGGCTGTGGCTTCTGAACCGGAGACCCAAGGACAGTTATGGCTTTTAGCCGAGTCTATTCGGACCCCCTGTCCCGAGGCATTTTCAAGAAATTTGTGGTCATGCTgtgttctctcctcacctccctgtACCTCCTCCACTGCCTCACGGACCGCTGCAGCAGCATGCCCACGCCGGTGAAAGCATCCAGCCAAGTCGTGGGCTTCTTCGCCTCGGAACTACACGACTTGAGGTCGCTGAGGAGGAAAAGACTGTTACAGAAATGGACCACAGGGTCCATGCCGGGCTTGAGCTACGAGAGCGCCGACAACGCTAAACGCGCCTCCGAGTACTCCCGGTTCAACGATGCTGATACCGGACAGGTTTTGTACGAACCGGGACATCAGGTGGACAGTGATAACGAAAAGAACCGAGAACTGTCGCATTATACGCAGCCTTCTTTGGGTGATATAGTTTATTCGAAGAGATTAGCACCTCGGTTTATGGTGAAGACGGGGAGTACAGGTAAACTCAGTCCGCTTGGAGACGGGACCAAGAAGCTTCCCCAGGCGATGATCATCGGTGTAAAGAAAGGAGGGACGCGCGCGCTGCTCGAGTTCCTCCGCGTGCATCCAGACATCCGAGCTGTGGGAGCCGAACCGCACTTCTTCGACCGCAACTACGAGAATGGGCTGGAGTGGTACAGggaGCTGATGCCCAAGACCCTGGAGGGCCAGATCACCATGGAGAAGACCCCCAGCTACTTTGTGACCAGAGAGGCCCCGGCCCGGATCTCCGCCATGTCCCGGGACACCAAGCTTATTGTGGTGGTGCGGGACCCCGTCACCAGGGCCATCTCTGACTACACGCAGACGCTGTCCAAGAAGCCCGACATTCCCACCTTTGAGAGCCTGACCTTCAAAAACAGGACTACGGGGCTCATCGACACATCCTGGAGCGCCATCCAGATCGGCATCTATGCCAAGCACCTGGATAACTGGCTGCAGTACTTCCCCATGGGTCAGATCCTGTTTGTGAGCGGAGAGCGTCTGATAAGCGACCCTGCCGGAGAGCTGGGCCGGGTGCAGGACTTCCTGGGACTCAAGAGGATCATCACTGACAAACACTTCTACTTCAACCAGACCAAGGGCTTCCCCTGCCTCAAGAAGGCTGAGGGCAGCAGCAAGCCCCACTGCCTGGGCAAAACCAAAGGGCGGACCCACCCCAACATCCACCCAGAGGTGGTGCAGAGGCTACGGGACTTCTACAGACCTTTCAACATGAAGTTCTACCAGATGACTGGACAGATATTTGGTTGGGACGATTGACTGGGCCTCAAGTACTGGATGCTCAGTGGAGAACACTGAGGACTATTGACACTACCAAATTACTGTGCGACATCCACAATACTAAGCCTAGAAGCAATATTTGTCAATGAGAGAGAAGTAGCCTAATCTGCTCTTACTGGTAAGCCAGATATTCAATATGTTTCACCCTGTTACGTATTCCTCTATCTGAACTGCCTCAAAACAAGTATCAGCAGCCTACAAGATGCTGGTTGAATAAAATGCATAGAGCTGGATTGTCCCTCATAGAACATGTGGTGGTTCCAATACAGAAAGATACTGTAGGTACTGTCTCTACATCTCTACAAGGTTTTACCAGCACTATCAGAGTGAAGTGTTTTCTGTTTGGAACCTTCCAGTGCTGCAAAAGACAAATATGCAGTCGTGTTACTGAAATGTTTTTTGAAATGGCACAGAGAGACGTTCGATATACAGTCTTGTCTGAGTGGTTCTATGCCATACTTTAAAGCAAACCTAGCCGCTTTGCATTTTTTCTAGAAAatattgaaaaaaataaatacatgttatttATTTAAGATGATGTACACATGCAGTATATAATATACATATTTTGAATAACTTTCTTCACTGATAATATTATTTCATATTATGTTGTATATGCCTCTAGAGAGTTACATTTGTTTTATACTGTACAACATATTTTTTGCTTTATCAAGTTATTCATTTTAATTTGTATATTCTTTACATTACATTGATGCGGTTACTACACCCTTTCCCGCTGAGCTTGCAATTCCAATCCTGTGAGGGTTTGTTATTCCGAGGGTAGTTTCCCCACATTCATTTAATGGAGTTAATTGAATTACAGTGTAGCGCGAGAGACAGAGCAAAGATAGCACTTACTGGATGtgtccaatggcaccctattccctacacagtgcactacttttgacctgggcccatagggattagggtgccatttggatggATAATCAGTCAGCTGTTGTATCATCAACAGCAACTCCTCAACTAATGTTATAACGAGACCTCCAGTGGGCCTATCCAAATGATTCCTCAAATTTCCTCTTCGACATGCCTCCTTGTGAACTGAATACAGTTGATGTCAGTCTGCCTTCCTTGCCTCGGAGGCATCCGTGGAtggcggtctctctctctgtgttaagaAGAGCTATAGCACAATGGTGAAGTTGTGTTTCTGATTTATATCTGCCTGGTTGTATTGTAAGCTTCCAAaagatcctctcctctctcaaagCAGATGTGCCTCAAAGGGACACTTAATCATGGTCAGTGTTTTCTATAGGAGTTCAGTgggaaacataaaccttttatgCAATCTGCCATCCGTCTTtatcatacatacatactgttatGGTTTTGTCTATTTAATTTGAATTCATGTTGGATTGATTAAGCACACTTTTAATAAAAGATAACAG

Function

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 3A1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K07809 HS3ST3; [heparan sulfate]-glucosamine 3-sulfotransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576254.2 True 3178 mRNA 0.46 2 26003272 26050911

Neighbor

gene id symbol gene type direction distance location
cdc42ep4b cdc42ep4 coding upstream 610680 25364815 ~ 25392592 (+)
sdk2b sdk2 coding upstream 648847 24892930 ~ 25354425 (+)
LOC110499595 NA coding upstream 1371171 24629543 ~ 24632101 (+)
LOC118942055 NA coding upstream 1813813 24183559 ~ 24189459 (+)
slc16a3 LOC106610249 coding upstream 1833780 24146065 ~ 24169492 (+)
LOC110499247 LOC106589631 coding downstream 179234 26230145 ~ 26235558 (+)
sgca LOC106589632 coding downstream 212148 26263059 ~ 26284385 (+)
tmem101 tmem101 coding downstream 332594 26383505 ~ 26388284 (+)
g6pc3 g6pc3 coding downstream 354201 26405112 ~ 26407414 (+)
LOC110499256 LOC106589642 coding downstream 581184 26632095 ~ 26639269 (+)
G1677937 NA non-coding upstream 21308 25981667 ~ 25981964 (+)
G1677832 LOC106589627 non-coding upstream 191287 25808033 ~ 25811985 (+)
G1677823 NA non-coding upstream 209353 25793685 ~ 25793919 (+)
G1677788 NA non-coding upstream 266620 25736429 ~ 25736652 (+)
G1677787 NA non-coding upstream 266963 25736007 ~ 25736309 (+)
G1678705 NA non-coding downstream 48349 26099260 ~ 26099470 (+)
G1678706 NA non-coding downstream 48583 26099494 ~ 26099844 (+)
G1678803 NA non-coding downstream 130130 26181041 ~ 26181360 (+)
G1678805 NA non-coding downstream 131087 26181998 ~ 26182359 (+)
G1678817 NA non-coding downstream 153562 26204473 ~ 26204782 (+)
G1677738 NA other upstream 361658 25636691 ~ 25641614 (+)
G1677419 LOC100194703 other upstream 919995 25082664 ~ 25083277 (+)
faap100 faap100 other upstream 2421840 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 2745203 23252800 ~ 23269058 (+)
LOC110513322 rsl1d1 other upstream 4043645 21936590 ~ 21959627 (+)
G1678963 NA other downstream 411283 26462194 ~ 26467953 (+)
LOC110499259 LOC106589644 other downstream 603716 26654584 ~ 26656111 (+)
G1679135 NA other downstream 649481 26700392 ~ 26775680 (+)
G1679823 NA other downstream 1033515 27084426 ~ 27087463 (+)

Expression


Co-expression Network