Gene
RNA
| Item | Value |
|---|---|
| gene id | col1a1b |
| gene name | col1a3 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 26276154 ~ 26298481 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| collagen a3(I) precursor |
| id | name | namespace |
|---|---|---|
| GO:0005581 | collagen trimer | cellular_component |
| GO:0005201 | extracellular matrix structural constituent | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036955524.1 | False | 5499 | mRNA | 0.57 | 47 | 26276154 | 26298481 |
| NM_001124206.1 | True | 4502 | mRNA | 0.62 | 49 | 26277272 | 26298440 |
26,276,000
26,280,000
26,284,000
26,288,000
26,292,000
26,296,000
26,300,000
26,304,000
26,308,000
26,312,000
26,316,000
26,320,000
26,324,000
NC_048584.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499248 | LOC100380747 | coding | downstream | 14770 | 26234910 ~ 26261384 (-) |
| trnag-ccc-5 | NA | coding | downstream | 46208 | 26229876 ~ 26229946 (-) |
| fbxw10 | cdrt1 | coding | downstream | 47130 | 26208532 ~ 26229024 (-) |
| LOC110499245 | LOC106589628 | coding | downstream | 357718 | 25841005 ~ 25918436 (-) |
| hs3st3b1b | LOC106589627 | coding | downstream | 439824 | 25807975 ~ 25836330 (-) |
| si:ch1073-13h15.3 | LOC107387676 | coding | upstream | 61709 | 26360190 ~ 26365511 (-) |
| gngt2b | NA | coding | upstream | 75162 | 26373643 ~ 26383422 (-) |
| lsm12b | lsm12 | coding | upstream | 101656 | 26400137 ~ 26404966 (-) |
| tanc2b | LOC106589639 | coding | upstream | 110992 | 26409473 ~ 26629846 (-) |
| cntd1 | cntd1 | coding | upstream | 340302 | 26638783 ~ 26654541 (-) |
| G1679363 | NA | non-coding | downstream | 12951 | 26262104 ~ 26263203 (-) |
| G1679346 | LOC105030512 | non-coding | downstream | 34539 | 26241299 ~ 26241615 (-) |
| G1679340 | NA | non-coding | downstream | 45229 | 26230177 ~ 26230925 (-) |
| G1678754 | NA | non-coding | downstream | 145030 | 26130851 ~ 26131124 (-) |
| G1679384 | NA | non-coding | upstream | 13527 | 26312008 ~ 26312245 (-) |
| G1679397 | NA | non-coding | upstream | 32021 | 26330502 ~ 26330793 (-) |
| G1679402 | NA | non-coding | upstream | 40100 | 26338581 ~ 26338828 (-) |
| G1679403 | NA | non-coding | upstream | 42097 | 26340578 ~ 26340949 (-) |
| G1679408 | NA | non-coding | upstream | 45814 | 26344295 ~ 26344500 (-) |
| G1678462 | NA | other | downstream | 571030 | 25704621 ~ 25705124 (-) |
| G1678242 | cdc42ep4 | other | downstream | 883578 | 25387881 ~ 25392576 (-) |
| G1677008 | NA | other | downstream | 1565656 | 24710125 ~ 24710498 (-) |
| G1676904 | NA | other | downstream | 1637453 | 24638343 ~ 24638701 (-) |
| G1680017 | NA | other | upstream | 746301 | 27044782 ~ 27045294 (-) |
| G1680171 | cog2 | other | upstream | 982342 | 27280823 ~ 27283995 (-) |
| sf3b5 | sf3b5 | other | upstream | 1083504 | 27381985 ~ 27384608 (-) |
| LOC110499285 | olig3 | other | upstream | 1451072 | 27748849 ~ 27750461 (-) |
