LOC110499256 (LOC106589642)


Basic Information

Item Value
gene id LOC110499256
gene name LOC106589642
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 26632095 ~ 26639269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956080.1
GCATGTGCGCGACCGACACGCCCATACAACTCCACTTGAAGTTTTGTGAGCGTGCCTCATCTCTATGGAGACGAAGAGACGCATCAGAGGTGAAAACACAGAGTTTGggaagtagctagctatctagcggCTCACTGACTGAAAATGGATTCGATTAAATAGAGTCTTTGTCCACATAATGTACAGCTGGGAAAGACGCGCAGCTGAGAAACTCACCAATGCTGAACACATTTGTgcggtgaggaagaggagagaccttAAATATGAGGACCACCTACGCAGACAGGAACAGGAAAGGACAGACGCAGAGGTGAGGAGGGAAGTACACAGAGTACGGACGCCTTCACCAACACCTCAGACAAATAGGTTCAAAGCCCGCAGGTATGAAAGACCATGGGCACAGGGAGCGCCAGGCACCAAGAAGTCCTCCAGCTCTGTGaaatccaccagatcagagatGAGAAACTCACAGAACAAAGGCTCAGAGTCCCGCTTTCCTGCCATCTCCAGCGGAACCCAGAGCAGTGTAACCCAAAGTAGAACAGCAGAATTGGCAACCACATCAAAGACATGGAGAAGAGCAATTGCCCCACTGGCATCCCACTGTAAGGAACAATCTCCACCATGTCACAAACACAGATCTGTGGCTATAAAAAACAGAGCCTGTAAGTTATCCACATGTGCAACTAAGTCAAACACTCTGAAACTAACACAAAGTCAAGACACACTGAGGGTGAAGAAACAGATAGGAGCACCATCATGTGACCGAGCAGATAGTTCAAACATCTCTACAAGACATGATCTGGTCAAGAGGCCATTAGACAGCTGCTCCCTCCCACAGCCCCTGACCTTTTCTAGAAGATCCTACACAGATTGGCCCGGTCTTCCCTCACTGCAGTACCACCGCTCCCCCAGCCCAGAAGACCCAGAGTCCCATCACTATGTCCAGCTGATCTCGGATCCCTTCCAGGGCTTCTCAGAGAGCAGTAGTATCACAGAGGAGTACGTACGCAGTGAGGACACCTACAGGGCTGAGCTCTGCTCCAGGAGTTTAGCTGACACCAGTCCTTTGTCCGTACCGGAGTCCCTCCCCTCGCAATGCCCCTCCAGCAGTGGCACCCTGGAAAGCAGCTCTCTCAGCCTCAGTGACTCCTTCACCGGCCCCCTCAGCAGCCACTTCCGCACGCTGGGTGTTCTGTCCTCCGAGTCTGAGTCAGACGGGGAAGACGACAGCCATTCATGTCAGGATGCTGATAGAGAGAGCTACCAAATCCCTGTGAGGTGGACTGCCTCTCAGTCTCCCAGTGTCCGTACCGTCCGGAGTCCCAGGGGCCTGCAGTCCCAGCTGAGTTTGGAGTCAACAAGCACCCCTGAAGAATCACCAAACAGTAGAGCTTCATACACTGGAGAAGGATATAGTCCCATGCCTTCACTAATGCAAGTAGGTCGACTGTCGATATCACCGCTGTCCATAACACCCTCTGTCACACAGAGAGCCAGCAGGGCTCTCACTATCCCGCAGCAGCTGTATGAACACCTCCCTGAGCTGGATCATCTCAGCCCCCTTAGCCCCAGGAGAGCTAACCCCATCTGGCTGGGGTCAGAGAGATGGCCGGTGCTGGAGGCCTCACCACCCAGGACCAGCTACACCCTGAGGCACTCCCAGCTGGTCAGCAGGATCCAGCAGGAGGAACCAGAGGAGGTCAGAGGAGAGGCCAATAGTAGTACAGAGGACACTCCGTCCTCCAGTGAAGCCTCACGCCATGGGACCTCTGGGCTGATGGATCACCTGACCATGGCCCTGATGGCCCTCCGTGACATCCGCAGGGAGGTGGCTCACATTCAGATGAGCAACGCACAGCAGGGTAGCGGTGCTATGGCAGCTCAGGAGGCCCAATCAGCAACGGCTACCAACCCAGAGACGTTACGCAAAATCAAAGAACGTCTGTTGGAAGAGTCGTCTGATGAGGAGGAAGGGGACCAGTGTCGTATCTGTCAGTGTGGTGCTGGCTCCCTGACCAACCCCCTGCTCACCCCCTGTCTCTGCTCCGGCAGCCTGCAGTACATCCACCACGACTGCCTGAAGAGGTGGATCCAGACTAAAATACAGTCAGGGACCACACTGTCTGCAGTCAAAACCTGTGAGTTGTGTAAGGGGAGCCTAACACTGGATCTGGACGACTTTGACATGGAGGAGTTTTACCAAAGGCATGGCCAGACACAGGTGGAGCAGACCAGTCCAGAGCTGTACATGTTGCTGATCCTTCGGCAGAGGTTCTCAGAGCTGCTGCAGGTGGCCCAGTCACGTAGCAACACCGTCTCTAGGGTTTGATGGGTTTCTCTTCTTCCACGCACACTGAGGGTGAGAGCCAGCAGAGGGAGCCAGAGAGGCAATCACACGCCAGGGACACCTGACCCACCCACCTGACACCTTCACCCTTCTTACTTCCTGTTTTTAAATCCTGGGTGAAGTGACGTTTATGATGAATTTATTCTAACTTATTTCATGAAATGATTTTAACACACGATGCAGTGCATCTTATTCAATGGTACCATCTGGACAGAGGAGAAATAACTTGACAGAGGTGGTgggtataataaatacatttattcTTATCTATTTAAGTTAAATGAATTACTTATTACactatttattacatttctattaTTAGGATTTTAACATCAGCTTTGCTTTTATATTGCACACTATGACATTTAACAGATATGACTGACTTGATAGATGGAAGAAGGCTCTTTAATGGTGCTAATTGTTGGAACAGTAAACAGAAATAAACATCCAGAAAATAGAAGTTAAATTCTTAAGGAAATCAACTAGAAAGTCAAACTCAGGGAGCTAGTTTTTATATCAGATGTTTGGTGCGAACCTTTCAATCTTTTTACATACAGACACTGTAGTTTTACTGTACTGtcttactgtacagtactgtactgtctatgtctcaatggctttatttctttcataacTTCCTGTAACCTGTAGCTGAAGAAACTTAGTTCATTGTCAAGTTTCAGACCAACTTAAAACAAATTCGCGTAAATAAAATCTTTCAA
>XM_036956079.1
TGCGCGACCGACACGCCCATACAACTCCACTTGAAGTTTTGTGAGCGTGCCTCATCTCTATGGAGACGAAGAGACGCATCAGAGGTGAAAACACAGAGTTTGggaagtagctagctatctagcggCTCACTGACTGAAAATGGATTCGATTAAATACTGGGAAAGACGCGCAGCTGAGAAACTCACCAATGCTGAACACATTTGTgcggtgaggaagaggagagaccttAAATATGAGGACCACCTACGCAGACAGGAACAGGAAAGGACAGACGCAGAGGTGAGGAGGGAAGTACACAGAGTACGGACGCCTTCACCAACACCTCAGACAAATAGGTTCAAAGCCCGCAGGTATGAAAGACCATGGGCACAGGGAGCGCCAGGCACCAAGAAGTCCTCCAGCTCTGTGaaatccaccagatcagagatGAGAAACTCACAGAACAAAGGCTCAGAGTCCCGCTTTCCTGCCATCTCCAGCGGAACCCAGAGCAGTGTAACCCAAAGTAGAACAGCAGAATTGGCAACCACATCAAAGACATGGAGAAGAGCAATTGCCCCACTGGCATCCCACTGTAAGGAACAATCTCCACCATGTCACAAACACAGATCTGTGGCTATAAAAAACAGAGCCTGTAAGTTATCCACATGTGCAACTAAGTCAAACACTCTGAAACTAACACAAAGTCAAGACACACTGAGGGTGAAGAAACAGATAGGAGCACCATCATGTGACCGAGCAGATAGTTCAAACATCTCTACAAGACATGATCTGGTCAAGAGGCCATTAGACAGCTGCTCCCTCCCACAGCCCCTGACCTTTTCTAGAAGATCCTACACAGATTGGCCCGGTCTTCCCTCACTGCAGTACCACCGCTCCCCCAGCCCAGAAGACCCAGAGTCCCATCACTATGTCCAGCTGATCTCGGATCCCTTCCAGGGCTTCTCAGAGAGCAGTAGTATCACAGAGGAGTACGTACGCAGTGAGGACACCTACAGGGCTGAGCTCTGCTCCAGGAGTTTAGCTGACACCAGTCCTTTGTCCGTACCGGAGTCCCTCCCCTCGCAATGCCCCTCCAGCAGTGGCACCCTGGAAAGCAGCTCTCTCAGCCTCAGTGACTCCTTCACCGGCCCCCTCAGCAGCCACTTCCGCACGCTGGGTGTTCTGTCCTCCGAGTCTGAGTCAGACGGGGAAGACGACAGCCATTCATGTCAGGATGCTGATAGAGAGAGCTACCAAATCCCTGTGAGGTGGACTGCCTCTCAGTCTCCCAGTGTCCGTACCGTCCGGAGTCCCAGGGGCCTGCAGTCCCAGCTGAGTTTGGAGTCAACAAGCACCCCTGAAGAATCACCAAACAGTAGAGCTTCATACACTGGAGAAGGATATAGTCCCATGCCTTCACTAATGCAAGTAGGTCGACTGTCGATATCACCGCTGTCCATAACACCCTCTGTCACACAGAGAGCCAGCAGGGCTCTCACTATCCCGCAGCAGCTGTATGAACACCTCCCTGAGCTGGATCATCTCAGCCCCCTTAGCCCCAGGAGAGCTAACCCCATCTGGCTGGGGTCAGAGAGATGGCCGGTGCTGGAGGCCTCACCACCCAGGACCAGCTACACCCTGAGGCACTCCCAGCTGGTCAGCAGGATCCAGCAGGAGGAACCAGAGGAGGTCAGAGGAGAGGCCAATAGTAGTACAGAGGACACTCCGTCCTCCAGTGAAGCCTCACGCCATGGGACCTCTGGGCTGATGGATCACCTGACCATGGCCCTGATGGCCCTCCGTGACATCCGCAGGGAGGTGGCTCACATTCAGATGAGCAACGCACAGCAGGGTAGCGGTGCTATGGCAGCTCAGGAGGCCCAATCAGCAACGGCTACCAACCCAGAGACGTTACGCAAAATCAAAGAACGTCTGTTGGAAGAGTCGTCTGATGAGGAGGAAGGGGACCAGTGTCGTATCTGTCAGTGTGGTGCTGGCTCCCTGACCAACCCCCTGCTCACCCCCTGTCTCTGCTCCGGCAGCCTGCAGTACATCCACCACGACTGCCTGAAGAGGTGGATCCAGACTAAAATACAGTCAGGGACCACACTGTCTGCAGTCAAAACCTGTGAGTTGTGTAAGGGGAGCCTAACACTGGATCTGGACGACTTTGACATGGAGGAGTTTTACCAAAGGCATGGCCAGACACAGGTGGAGCAGACCAGTCCAGAGCTGTACATGTTGCTGATCCTTCGGCAGAGGTTCTCAGAGCTGCTGCAGGTGGCCCAGTCACGTAGCAACACCGTCTCTAGGGTTTGATGGGTTTCTCTTCTTCCACGCACACTGAGGGTGAGAGCCAGCAGAGGGAGCCAGAGAGGCAATCACACGCCAGGGACACCTGACCCACCCACCTGACACCTTCACCCTTCTTACTTCCTGTTTTTAAATCCTGGGTGAAGTGACGTTTATGATGAATTTATTCTAACTTATTTCATGAAATGATTTTAACACACGATGCAGTGCATCTTATTCAATGGTACCATCTGGACAGAGGAGAAATAACTTGACAGAGGTGGTgggtataataaatacatttattcTTATCTATTTAAGTTAAATGAATTACTTATTACactatttattacatttctattaTTAGGATTTTAACATCAGCTTTGCTTTTATATTGCACACTATGACATTTAACAGATATGACTGACTTGATAGATGGAAGAAGGCTCTTTAATGGTGCTAATTGTTGGAACAGTAAACAGAAATAAACATCCAGAAAATAGAAGTTAAATTCTTAAGGAAATCAACTAGAAAGTCAAACTCAGGGAGCTAGTTTTTATATCAGATGTTTGGTGCGAACCTTTCAATCTTTTTACATACAGACACTGTAGTTTTACTGTACTGtcttactgtacagtactgtactgtctatgtctcaatggctttatttctttcataacTTCCTGTAACCTGTAGCTGAAGAAACTTAGTTCATTGTCAAGTTTCAGACCAACTTAAAACAAATTCGCGTAAATAAAATCTTTCAA
>XM_036956078.1
GATGATAATAATTTAGCTATTCTGTAATTAGTTAATAGGTTAACAGAATGGTAGGGCATTTGCATTTGCTTTAGCATCTGCCACCACAATTCAACCGATCCAACTGTCTTAGCCTACCTATTAtataacgttaactagctaatatattacattattatgGTGACGAACACGCCAacgagttagctagctagctaattttgtTGATATGTAAAATAGCTCCATGTGTAATCTTATAAATCAATAAACTTTACTTCAAATATCGACCATCTGTAACGTTGTATGTCAGGAGTCTTTGTCCACATAATGTACAGCTGGGAAAGACGCGCAGCTGAGAAACTCACCAATGCTGAACACATTTGTgcggtgaggaagaggagagaccttAAATATGAGGACCACCTACGCAGACAGGAACAGGAAAGGACAGACGCAGAGGTGAGGAGGGAAGTACACAGAGTACGGACGCCTTCACCAACACCTCAGACAAATAGGTTCAAAGCCCGCAGGTATGAAAGACCATGGGCACAGGGAGCGCCAGGCACCAAGAAGTCCTCCAGCTCTGTGaaatccaccagatcagagatGAGAAACTCACAGAACAAAGGCTCAGAGTCCCGCTTTCCTGCCATCTCCAGCGGAACCCAGAGCAGTGTAACCCAAAGTAGAACAGCAGAATTGGCAACCACATCAAAGACATGGAGAAGAGCAATTGCCCCACTGGCATCCCACTGTAAGGAACAATCTCCACCATGTCACAAACACAGATCTGTGGCTATAAAAAACAGAGCCTGTAAGTTATCCACATGTGCAACTAAGTCAAACACTCTGAAACTAACACAAAGTCAAGACACACTGAGGGTGAAGAAACAGATAGGAGCACCATCATGTGACCGAGCAGATAGTTCAAACATCTCTACAAGACATGATCTGGTCAAGAGGCCATTAGACAGCTGCTCCCTCCCACAGCCCCTGACCTTTTCTAGAAGATCCTACACAGATTGGCCCGGTCTTCCCTCACTGCAGTACCACCGCTCCCCCAGCCCAGAAGACCCAGAGTCCCATCACTATGTCCAGCTGATCTCGGATCCCTTCCAGGGCTTCTCAGAGAGCAGTAGTATCACAGAGGAGTACGTACGCAGTGAGGACACCTACAGGGCTGAGCTCTGCTCCAGGAGTTTAGCTGACACCAGTCCTTTGTCCGTACCGGAGTCCCTCCCCTCGCAATGCCCCTCCAGCAGTGGCACCCTGGAAAGCAGCTCTCTCAGCCTCAGTGACTCCTTCACCGGCCCCCTCAGCAGCCACTTCCGCACGCTGGGTGTTCTGTCCTCCGAGTCTGAGTCAGACGGGGAAGACGACAGCCATTCATGTCAGGATGCTGATAGAGAGAGCTACCAAATCCCTGTGAGGTGGACTGCCTCTCAGTCTCCCAGTGTCCGTACCGTCCGGAGTCCCAGGGGCCTGCAGTCCCAGCTGAGTTTGGAGTCAACAAGCACCCCTGAAGAATCACCAAACAGTAGAGCTTCATACACTGGAGAAGGATATAGTCCCATGCCTTCACTAATGCAAGTAGGTCGACTGTCGATATCACCGCTGTCCATAACACCCTCTGTCACACAGAGAGCCAGCAGGGCTCTCACTATCCCGCAGCAGCTGTATGAACACCTCCCTGAGCTGGATCATCTCAGCCCCCTTAGCCCCAGGAGAGCTAACCCCATCTGGCTGGGGTCAGAGAGATGGCCGGTGCTGGAGGCCTCACCACCCAGGACCAGCTACACCCTGAGGCACTCCCAGCTGGTCAGCAGGATCCAGCAGGAGGAACCAGAGGAGGTCAGAGGAGAGGCCAATAGTAGTACAGAGGACACTCCGTCCTCCAGTGAAGCCTCACGCCATGGGACCTCTGGGCTGATGGATCACCTGACCATGGCCCTGATGGCCCTCCGTGACATCCGCAGGGAGGTGGCTCACATTCAGATGAGCAACGCACAGCAGGGTAGCGGTGCTATGGCAGCTCAGGAGGCCCAATCAGCAACGGCTACCAACCCAGAGACGTTACGCAAAATCAAAGAACGTCTGTTGGAAGAGTCGTCTGATGAGGAGGAAGGGGACCAGTGTCGTATCTGTCAGTGTGGTGCTGGCTCCCTGACCAACCCCCTGCTCACCCCCTGTCTCTGCTCCGGCAGCCTGCAGTACATCCACCACGACTGCCTGAAGAGGTGGATCCAGACTAAAATACAGTCAGGGACCACACTGTCTGCAGTCAAAACCTGTGAGTTGTGTAAGGGGAGCCTAACACTGGATCTGGACGACTTTGACATGGAGGAGTTTTACCAAAGGCATGGCCAGACACAGGTGGAGCAGACCAGTCCAGAGCTGTACATGTTGCTGATCCTTCGGCAGAGGTTCTCAGAGCTGCTGCAGGTGGCCCAGTCACGTAGCAACACCGTCTCTAGGGTTTGATGGGTTTCTCTTCTTCCACGCACACTGAGGGTGAGAGCCAGCAGAGGGAGCCAGAGAGGCAATCACACGCCAGGGACACCTGACCCACCCACCTGACACCTTCACCCTTCTTACTTCCTGTTTTTAAATCCTGGGTGAAGTGACGTTTATGATGAATTTATTCTAACTTATTTCATGAAATGATTTTAACACACGATGCAGTGCATCTTATTCAATGGTACCATCTGGACAGAGGAGAAATAACTTGACAGAGGTGGTgggtataataaatacatttattcTTATCTATTTAAGTTAAATGAATTACTTATTACactatttattacatttctattaTTAGGATTTTAACATCAGCTTTGCTTTTATATTGCACACTATGACATTTAACAGATATGACTGACTTGATAGATGGAAGAAGGCTCTTTAATGGTGCTAATTGTTGGAACAGTAAACAGAAATAAACATCCAGAAAATAGAAGTTAAATTCTTAAGGAAATCAACTAGAAAGTCAAACTCAGGGAGCTAGTTTTTATATCAGATGTTTGGTGCGAACCTTTCAATCTTTTTACATACAGACACTGTAGTTTTACTGTACTGtcttactgtacagtactgtactgtctatgtctcaatggctttatttctttcataacTTCCTGTAACCTGTAGCTGAAGAAACTTAGTTCATTGTCAAGTTTCAGACCAACTTAAAACAAATTCGCGTAAATAAAATCTTTCAA
>TU1920824
GTTTTGTGAGCGTGCCTCATCTCTATGGAGACGAAGAGACGCATCAGAGGTGAAAACACAGAGTTTGggaagtagctagctatctagcggCTCACTGACTGAAAATGGATTCGATTAAATAGAGTCTTTGTCCACATAATGTACAGCTGGGAAAGACGCGCAGCTGAGAAACTCACCAATGCTGAACACATTTGTgcggtgaggaagaggagagaccttAAATATGAGGACCACCTACGCAGACAGGAACAGGAAAGGACAGACGCAGAGGTGAGGAGGGAAGTACACAGAGTACGGACGCCTTCACCAACACCTCAGACAAATAGGTTCAAAGCCCGCAGGTATGAAAGACCATGGGCACAGGGAGCGCCAGGCACCAAGAAGGTATTAACTCTTCACACTTCTACAGTTTTACAAGTGCCACATAACATTGTCATGTCATTGAAACAACATTGGTCCTgtatagctcagttggtagagcatggtgcttgcaacaccagggttgtgagTTTGATTCTCATGGGGGGCcagta

Function

NR:

description
E3 ubiquitin-protein ligase MARCH7-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956080.1 False 3072 mRNA 0.50 9 26632095 26639269
XM_036956079.1 False 3042 mRNA 0.50 9 26632100 26639269
XM_036956078.1 False 3197 mRNA 0.48 8 26632265 26639269
TU1920824 True 533 TUCP 0.48 3 26632135 26633198

Neighbor

gene id symbol gene type direction distance location
g6pc3 g6pc3 coding upstream 224681 26405112 ~ 26407414 (+)
tmem101 tmem101 coding upstream 243811 26383505 ~ 26388284 (+)
sgca LOC106589632 coding upstream 357114 26263059 ~ 26284385 (+)
LOC110499247 LOC106589631 coding upstream 396537 26230145 ~ 26235558 (+)
si:ch211-216b21.2 LOC106589629 coding upstream 581184 26003272 ~ 26050911 (+)
LOC110499259 LOC106589644 coding downstream 15315 26654584 ~ 26656111 (+)
LOC110498782 LOC105021192 coding downstream 143841 26783110 ~ 26785166 (+)
si:zfos-1056e6.1 LOC105021192 coding downstream 155905 26795174 ~ 26802125 (+)
dld LOC100380662 coding downstream 235197 26874466 ~ 26880268 (+)
LOC110499269 LOC106589654 coding downstream 330752 26970021 ~ 26972492 (+)
G1679087 NA non-coding upstream 2296 26629426 ~ 26629799 (+)
G1679086 NA non-coding upstream 2885 26628885 ~ 26629210 (+)
G1679085 NA non-coding upstream 3769 26627997 ~ 26628326 (+)
G1679082 NA non-coding upstream 8153 26623652 ~ 26623942 (+)
G1679056 NA non-coding upstream 36745 26594402 ~ 26595350 (+)
G1679109 wnk4 non-coding downstream 19508 26658777 ~ 26659716 (+)
G1679112 NA non-coding downstream 100528 26739797 ~ 26743615 (+)
G1679185 hltf non-coding downstream 139436 26778705 ~ 26779429 (+)
G1679190 ppm1g non-coding downstream 165733 26805002 ~ 26806391 (+)
G1679198 NA non-coding downstream 179801 26819070 ~ 26918127 (+)
G1678963 NA other upstream 164142 26462194 ~ 26467953 (+)
G1677738 NA other upstream 990481 25636691 ~ 25641614 (+)
G1677419 LOC100194703 other upstream 1548818 25082664 ~ 25083277 (+)
faap100 faap100 other upstream 3050663 23576429 ~ 23582556 (+)
LOC110499192 LOC106589579 other upstream 3374026 23252800 ~ 23269058 (+)
G1679135 NA other downstream 61123 26700392 ~ 26775680 (+)
G1679823 NA other downstream 445157 27084426 ~ 27087463 (+)
G1680230 NA other downstream 736085 27375354 ~ 27375819 (+)
G1681180 NA other downstream 2078092 28717361 ~ 28726495 (+)

Expression


Co-expression Network