LOC110499259 (LOC106589644)


Basic Information

Item Value
gene id LOC110499259
gene name LOC106589644
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 26654584 ~ 26656111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576278.2
GTCGAAACCGGAAATGTCTGGGGGAGCTATTATAGTGTTGCACAAGCAGGTCAGGCTGTCGCAAAAATGGCTGACCAGAAACCGACAGTGGATCCCGAAGTCCCTTTTGCAAAGAGGATAGATCCAAACAAGGAGGATCTTACCAGGGACGAGTTCTACTTTATCAGACAAGTGGAGCTCGCGCAATGGAAGAAGAAATCGCAGCAACTCAGGGGCCGTAATATTGCAACAGGACTTGCTATCGGAGCCATTGTAATGGGTATTTATGGCTACACGTTTTACTCAGTGAAACAGGAGAAGATTATGGATGAGCTGGATGAGGAGGCCAAGGTCGCGAGGATGGGGGGGGTAAAGACAGGCGCCAACTGACTTAATGATCAGATGGACTGAGCTCAGATCGACTGTGTGGTGTGCCACTGATCCTATCCCCTGTAGGCCTACTTGCACTGGAAGGGACTAATGCTGACAAATGTTGGTGCTACATCTTATTCCACTGCTAGCCACTGTCAAGGCAGCATCGGACCCTGTTTTGCCCTGGTATATAGACTTTTATGTGGTTGTGTTGCTGACTTAAGTGTCTTCATGGTGATTAAACATGCTTGTCTGTAGAAATAATTATCTATTATCCCCGATTACCCCCTTACAATTTCAGGATCCTGGGtcttgttcattaggcaccaagcgAATGGCAACATTTATTTAAATGGTTTCTGTTAAGTGCCCCAATGAACATGACCCTATTCTCCTTCCTTTTCTTCCCAACGAGTAGGCACTTGTGTAAAATGATTTGTATTCCCTTCAAATCAGCATCAAATGATTTCTCCCAAACTATAGAACTAATTCAACCTATATCAGTAATGTTAATTCTACAGTGGCCTTGAAATGGGTGGGATTAGAATTAGAACAGCTCAACTGAGACAAAGAAACACATTTATATTGAAATATATTTATGTTGATAAAGGATTGAGTTGTACATTTCTTtatattgtatttgtttttttcaCAACAATAAATGACATCTTATAGCAA
>TU1920840
AAGCAGGTCAGGCTGTCGCAAAAATGGCTGACCAGAAACCGACAGTGGATCCCGAAGTCCCTTTTGCAAAGAGGATAGATCCAAACAAGGAGGATCTTACCAGGGACGAGTTCTACTTTATCAGACAAGTGGAGCTCGCGCAATGGAAGAAGAAATCGCAGCAACTCAGGGGCCGTAATATTGCAACAGGACTTGCTATCGGAGCCATTGTAATGGGTATTTATGGCTACACGTTTTACTCAGTGAAACAGGAGAAGATTATGGATGAGCTGGATGAGGAGGCCAAGGTCGCGAGGATGGGGGGGGTAAAGACAGGCGCCAACTGACTTAATGATCAGATGGACTGAGCTCAGATCGACTGTGTGGTGTGCCACTGATCCTATCCCCTGTAGGCCTACTTGCACTGGAAGGGACTAATGCTGACAAATGTTGGTGCTACATCTTATTCCACTGCTAGCCACTGTCAAGGCAGCATCGGACCCTGTTTTGCCCTGGTATATAGACTTTTATGTGGTTGTGTTGCTGACTTAAGTGTCTTCATGGTGATTAAACATGCTTGTCTGTAGAAATAATTATCTATTATCCCCGATTACCCCCTTACAATTTCAGGATCCTGGGtcttgttcattaggcaccaagcgAATGGCAACATTTATTTAAATGGTTTCTGTTAAGTGCCCCAATGAACATGACCCTATTCTCCTTCCTTTTCTTCCCAACGAGTAGGCACTTGTGTAAAATGATTTGTATTCCCTTCAAATCAGCATCAAATGATTTCTCCCAAACTATAGAACTAATTCAACCTATATCAGTAATGTTAATTCTACAGTGGCCTTGAAATGGGTGGGATTAGAATTAGAACAGCTCAACTGAGACAAAGAAACACATTTATATTGAAATATATTTATGTTGATAAAGGATTGAGTTGTACATTTCTTtatattgtatttgtttttttcaCAACAATAAATGACATCTTATAGCAA

Function

NR:

description
cytochrome c oxidase assembly factor 3 homolog, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576278.2 False 1029 mRNA 0.42 2 26654584 26656111
TU1920840 True 986 TUCP 0.42 2 26654627 26656111

Neighbor

gene id symbol gene type direction distance location
LOC110499256 LOC106589642 coding upstream 15315 26632095 ~ 26639269 (+)
g6pc3 g6pc3 coding upstream 247170 26405112 ~ 26407414 (+)
tmem101 tmem101 coding upstream 266300 26383505 ~ 26388284 (+)
sgca LOC106589632 coding upstream 379603 26263059 ~ 26284385 (+)
LOC110499247 LOC106589631 coding upstream 419026 26230145 ~ 26235558 (+)
LOC110498782 LOC105021192 coding downstream 126999 26783110 ~ 26785166 (+)
si:zfos-1056e6.1 LOC105021192 coding downstream 139063 26795174 ~ 26802125 (+)
dld LOC100380662 coding downstream 218355 26874466 ~ 26880268 (+)
LOC110499269 LOC106589654 coding downstream 313910 26970021 ~ 26972492 (+)
LOC110499270 LOC106589653 coding downstream 317039 26973150 ~ 26978647 (+)
G1679087 NA non-coding upstream 24785 26629426 ~ 26629799 (+)
G1679086 NA non-coding upstream 25374 26628885 ~ 26629210 (+)
G1679085 NA non-coding upstream 26258 26627997 ~ 26628326 (+)
G1679082 NA non-coding upstream 30642 26623652 ~ 26623942 (+)
G1679056 NA non-coding upstream 59234 26594402 ~ 26595350 (+)
G1679109 wnk4 non-coding downstream 2666 26658777 ~ 26659716 (+)
G1679112 NA non-coding downstream 83686 26739797 ~ 26743615 (+)
G1679185 hltf non-coding downstream 122594 26778705 ~ 26779429 (+)
G1679190 ppm1g non-coding downstream 148891 26805002 ~ 26806391 (+)
G1679198 NA non-coding downstream 162959 26819070 ~ 26918127 (+)
G1678963 NA other upstream 186631 26462194 ~ 26467953 (+)
G1677738 NA other upstream 1012970 25636691 ~ 25641614 (+)
G1677419 LOC100194703 other upstream 1571307 25082664 ~ 25083277 (+)
faap100 faap100 other upstream 3073152 23576429 ~ 23582556 (+)
G1679135 NA other downstream 44281 26700392 ~ 26775680 (+)
G1679823 NA other downstream 428315 27084426 ~ 27087463 (+)
G1680230 NA other downstream 719243 27375354 ~ 27375819 (+)
G1681180 NA other downstream 2061250 28717361 ~ 28726495 (+)
G1681792 NA other downstream 2121895 28778006 ~ 28778409 (+)

Expression


Co-expression Network