XLOC_000358


Basic Information

Item Value
gene id XLOC_000358
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30074635 ~ 30079529 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003081
GTTTGAATTTCAAACTATGTTCTGCCTTGTCCAATCACCAATCGGCTATCTGATTCTTGCGGGAGCAGCcattttacagatattgtttgtgaGAGCGCGCGCTCAATCTGTCCGGCCCGCGAATAAAGCTGTGGAAGACGTCTTGCAGCATTTCTAACTACCGAGGCACTGGTAAGTTTAGTGAAAAGTTGGTTTACTTTGTACTTTAAACGCTTTACCATACAAACACCTGCAAAAAAGGAGAGGGTATTATTTGGGGTGTTGCACGGTCTTCGGAATAATAATCTGTGTTACAATGCAAATGTAACTCGGCCACTTGTCGTATCGTCCGACTAACGTAAAGCTGAAAAAAACTGAAGATTTTGTTAGAAGTCTAAAGATGATTAACGTTACGTGTCATTTTTGCAACAAAACACTTGACACACTGAGACGTTAACGTTATGTGTTGCATTGTAAAGTTCACAGAAACGAACCCCAttgtttttttcaaatgtgtTATTGCTGGTTGTATGCGAACATTTTGCGCTTACGCTGCATTAAAAGCACATGTCTATAGGGATCACATTGAGTTTGCCTCAACCGTTAGTACTAAAGCAGTTTTTGCTGATTTAAATGTGCCATTTTGTTGTGTGACCGCACGTTTAACACGGCTAAAGATTTAATAAGCCACTTAAAAGAGCATTTAGCGGATGGCCGACCTGTGTCTTGTCCAGTAACGGGTTGTAATACTTTTACAATCAATCGTCTTTTACAACTCATGATCAGGAAGCATAGAGCTGCTTCAAATGATACTATAAGTGATAATACCCATAATTTGGGTTCACACGCCATTGGTGGGTTAACTGAAAATTTCAGTCATGCTCAATATTTTTGCAGGTATTGTGAAATCACAAGAAATGAATTTCAGAGCGATAACTTAAATGTTTGTGGTCCACAGTGAACCCCTGAAACTTGATTCTGTTGTTCATGATTTACAATCTGAAGACTATCAAGAGATCAAAGGAATAAAGGTAAATTCTGCTGTTTTCAATACTTGAAATCTTTCCATGCCTGCCTTTTTACCCAAGTCTTTACAGTGAATCAATCAAACATACAGagaattttttctttttagagTTTAATACTACtgacagaaataatgtataaAGGAACATCATACAAAAAGGGACATTTTCTTGTGTCTAAAAATTATGAGTTTGATTTTGGAGAACTTCTcatcattttaattcaaaatggcGAAGCTGTGTTTTTGTAATGAGAATACAAAGAGCTGAATATCATTTTGAATACCATCTGTACTCTATGACTAAACAGAGTAACTGGCTACAGTGTCTTAGCATTAATGACTTGGTTGATTTTTATCCGCTAATATCATACTTTGGTAATGGGTACCAAGTCATTCTGCTGAAACACAGCGTGCTGTTGAAGTAAAGAGATCTTGTCCACAGAGGTggaaaaaatatggtaaaaatcatCATGTATGCTTAGTTAAAATAACATGtagtttaaagagatagttttcCCCAAAATTTTAAGTGTTGATATCATTTACTtaaccttgactttttttttttcttttttcaaacctgtttggggtttgtttgtttttgtttttttctcaagaggatatttgaagaatgttgtaactgttgacttctatagtatttcttGCTACTATAAAAGTTGATgattacaagtttccaacattctgcccccccccccccccaaaaaaaaaactcaaactagtATTTAATGTGTCAAgggtaaataaattatacattttaaatttttaggtaaactatctctttaaaataatagtaagatctgaatttttgttttatttgcatttagatgaacagaaataaactcttaataaatttaataactaCATGTTTAATCACTACTTGCTTAATTTCAGTATTGACTGACTTGGAGACAACATTTCTTCGTACTGCCATCACAGAGGTCTTGCCTAACCTTCCAGAGGCAacaaaagatattttagatgagtTATTGCAATCCATTGGAGTGGAGACATATGATGATTTTCAGTTTATTGAGGAATCTAATTTGATGACAGCATTGAGGCCAATCCAAGCTCAAAGTTCTTGCTGCTTGGAAGTTAAGATGTAAGTCGTGTTACAGAGCAGAATGCTACAAGACAAGTTCACAAAGTAACAGGTGTAAAAAAGgtcttgaaaagaaaaaaacaaaaactttgttactgactattgtttgtttatgaTCTTTTGCAGGCCAGACACCAGAAACAAGCAGCTCATCACAACCTTCCACAGCCTTGCATAGTTCACCTGCAAGTTCTCAATCGTCCTCCACCAGCAGCTCCCAAAGCCCAGATGTAGACTGGGTGGATACGTTTCTGATACCATGGGATACATTTTTTGGAGAGAGAAAAACTACCAAGTTCACGAATGAGAAGAGAGATGGTCCGAATTGTGGTAAATGAGATTCTTCACTAAAGAATAGTACCCTGGCCCAACCACACCCCCATCTATTACTCTGTATACTTTGCTAGCAGTCTTTTTGAATTCCATTCACTGGACATATCCAGTTTGTAAAAGTACAGTTTCAAGTTTTCAGGAAGAAAAAATTCAGAACATCAAACTCAGTATTCTAAAATTCTAAACCAGATATTCAGAttgtgaaattcagattcagcagaaagtaGGTCAGGAGTCATCAACAGGGAAGAGTAGACGATCACTGAAAAGTTTAAGCTAAAATTAAGCATTTTGGCTATTCACAGAGCTGTGTGAGTTTACTGGTGTTTTTAAGGCTTAAGAGGACACAATTCTTCTGCAAACTGACTATCGGAGTCCGCTATTTTCAGTAGTTTGTGTAATAAATATGCTTCAGTGAactaaattcatatatttaattcagTTACATCTCATTGATTAATCAGTTTCATTTTCAAACTCCCTGCGCTTAACAGCTGTGGTAAATGACATATTTGCATGCTCCTGCTTTTTTGTCAAATTATACAggatattatattgttaaatttcataaaattatataaaatatttattacaatatttatagtACAGCATAGCATATAGTATTTTAAGGAAGATTTGAATGATGTTTGGCCAAAGCCTATCATCAACACTGAAATGCTGCCCGTTTTAAATATCTATTGGCATCCAAAATGTCATATTTAaccttgcatttatatttatttgaatgatcagatttttccatatatttaaaaatatgacatTATTTTTTAGCTAAAATACGTTGAAACCAAAATGTCCAATAGGTGGCGCCAAATCCCTATCTTTGTCATTGAATTGTTCATTCAGAGTCATTCGATTCAGctcatttataaatgaattaagtGACTCACTATGAATGACACGCTCAGAGATTCTTGTTAACCTCATTTGTTAAGTGCTTTAAACTTTGTTTCAAATGGTTACAACATAAGAGGTGGTAAGTTTATTGTTGTGAATAATGTACAGCGAAAGCCACTTGATGatttttcaacgttttttttttatgtgacccGAAACTAAAAGCATCCTTCCCCTAGCccgccacccccccccccctgacCTACTGtctgctgaatctgaatttcacaatttgaatttctggttttgaattttacaatattgaatttgatgttctATATTTTTTGTTCGGAAAACTTGAAACGTCTATAAAAAAATTTCAGCCTTAAATttagttgtcttaaatttcagatgttcattattcaagttaagaaattcaaattcaaatttttttacggcatataaaaatttagatttatagaattacaattgtcaataattcaaactaacacaattcaaattcagattggaaaatcatattattagctccataattTACAATAAGAATAAATGTGTTACCATTAGTAATCATGAATGTACAACAATACTTATATGGTGTTTATTAATTGTTGTTACTAAAATTATTATGTATTTCAAGATCAAAGACTGTTATGataacatttaatataatagtAACATAAATCTTgtaaaagattttttaatttgtttgtattttttacttttatggtattgtaaataaataccaaatgtaacttttatttaacttttttcttaGGCCAATCCTGCTTTTCATCGAAGCGTTTCCTGCTGTGTGTGGATCGAAATGTTGTACATGACAACATCCCCTCCTTTATTTCTGCCCTGTGCATGATGTTTGGGAGCTATTATTGCTTCGACATCCATTACCCATCAGAGCTGGCATCAATCTTGGAGTTTTTGCAGAAGTATGTGTTTTTGTACAGGCTACAACATTGaagtgaaaaaaattaaagtaattgATGCAGTGGCTTTTTATGAATACTTAAATTGCTAATGcaaagttttctttttattttccctGGTTTATATGTATAGGTTAATACATTTCAATATAGTTTCAATTAAAAAGGTATTTTTCCCCAGAAaaaataagtagttttttttatcattaatacaatttaattttttctgttttttgccCAGGTGTTTCTTCTCTATCAACCCAGAGAAAGGCACTAAAGTGGAGAAGACAAACACAGCCCGTCTTCATGTGAACCCAAGAGTTCTTACCTTGATTCAGGAACTTTCAGATCATGAATGGCGTGACGTCTAAATATGGACTGAAGTCAGTAAGATTTGACATACAGTGAATGCCAGTTTCTCAGGTTTGTTTGATCTGCCATGCTTAATGTATGTGTTTAAGTTAGTACACAACTATTAGCGTTTTTATCTAGTGTTTTCTGAATTAGGTTATTCCTGAATTGGTTGTTTGTATggaatatttgtttataaaacaactAAATGTTCTTAAATCGATTTAAAAGAAAAGTTGGtagcactttaaaataactacaa
>TCONS_00002844
acagatattgtttgtgaGAGCGCGCGCTCAATCTGTCCGGCCCGCGAATAAAGCTGTGGAAGACGTCTTGCAGCATTTCTAACTACCGAGGCACTGTGAACCCCTGAAACTTGATTCTGTTGTTCATGATTTACAATCTGAAGACTATCAAGAGATCAAAGGAATAAAGTATTGACTGACTTGGAGACAACATTTCTTCGTACTGCCATCACAGAGGTCTTGCCTAACCTTCCAGAGGCAacaaaagatattttagatgagtTATTGCAATCCATTGGAGTGGAGACATATGATGATTTTCAGTTTATTGAGGAATCTAATTTGATGACAGCATTGAGGCCAATCCAAGCTCAAAGTTCTTGCTGCTTGGAAGTTAAGATGCCAGACACCAGAAACAAGCAGCTCATCACAACCTTCCACAGCCTTGCATAGTTCACCTGCAAGTTCTCAATCGTCCTCCACCAGCAGCTCCCAAAGCCCAGATGTAGACTGGGTGGATACGTTTCTGATACCATGGGATACATTTTTTGGAGAGAGAAAAACTACCAAGTTCACGAATGAGAAGAGAGATGGTCCGAATTGTGGCCAATCCTGCTTTTCATCGAAGCGTTTCCTGCTGTGTGTGGATCGAAATGTTGTACATGACAACATCCCCTCCTTTATTTCTGCCCTGTGCATGATGTTTGGGAGCTATTATTGCTTCGACATCCATTACCCATCAGAGCTGGCATCAATCTTGGAGTTTTTGCAGAAGTATGTGTTTTTGTACAGGCTACAACATTGaagtgaaaaaaattaaagtaattgATGCAGTGGCTTTTTATGAATACTTAAATTGCTAATGcaaagttttctttttattttccctGGTTTATATGTATAGGTTAATACATTTCAATATAGTTTCAATTAAAAAGGTATTTTTCCCCAGAAaaaataagtagttttttttatcattaatacaatttaattttttctgttttttgccCAGGTGTTTCTTCTCTATCAACCCAGAGAAAGGCACTAAAGTGGAGAAGACAAACACAGCCCGTCTTCATGTGAACCCAAGAGTTCTTACCTTGATTCAGGAACTTTCAGATCATGAATGGCGTGACGTCTAAATATGGACTGAAGTCAGTAAGATTTGACATACAGTGAATGCCAGTTTCTCAGGTTTGTTTGATCTGCCATGCTTAATGTATGTGTTTAAGTTAGTACACAACTATTAGCGTTTTTATCTAGTGTTTTCTGAATTAGGTTATTCCTGAATTGGTTGTTTGTATggaatatttgtttataaaacaactAAATGTTCTTAAATCGATTTAAAAGAAAAGTTGGtagcactttaaaataactacaa
>TCONS_00002843
CGCTCAATCTGTCCGGCCCGCGAATAAAGCTGTGGAAGACGTCTTGCAGCATTTCTAACTACCGAGGCACTGTGAACCCCTGAAACTTGATTCTGTTGTTCATGATTTACAATCTGAAGACTATCAAGAGATCAAAGGAATAAAGGCCAGACACCAGAAACAAGCAGCTCATCACAACCTTCCACAGCCTTGCATAGTTCACCTGCAAGTTCTCAATCGTCCTCCACCAGCAGCTCCCAAAGCCCAGATGTAGACTGGGTGGATACGTTTCTGATACCATGGGATACATTTTTTGGAGAGAGAAAAACTACCAAGTTCACGAATGAGAAGAGAGATGGTCCGAATTGTGGCCAATCCTGCTTTTCATCGAAGCGTTTCCTGCTGTGTGTGGATCGAAATGTTGTACATGACAACATCCCCTCCTTTATTTCTGCCCTGTGCATGATGTTTGGGAGCTATTATTGCTTCGACATCCATTACCCATCAGAGCTGGCATCAATCTTGGAGTTTTTGCAGAAGTGTTTCTTCTCTATCAACCCAGAGAAAGGCACTAAAGTGGAGAAGACAAACACAGCCCGTCTTCATGTGAACCCAAGAGTTCTTACCTTGATTCAGGAACTTTCAGATCATGAATGGCGTGACGTCTAAATATGGACTGAAGTCAGTAAGATTTGACATACAGTGAATGCCAGTTTCTCAGGTTTGTTTGATCTGCCATGCTTAATGTATGTGTTTAAGTTAGTACACAACTATTAGCGTTTTTATCTAGTGTTTTCTGAATTAGGTTATTCCTGAATTGGTTGTTTGTATggaatatttgtttataaaacaactAAATGTTCTTAAATCGATTTAAAAGAAAAGTTGGtagcactttaaaataactacaa

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0030182 neuron differentiation biological_process
GO:0006413 translational initiation biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0048699 generation of neurons biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003081 False 4895 lncRNA 0.34 1 30074635 30079529
TCONS_00002844 False 1363 lncRNA 0.38 5 30074710 30079529
TCONS_00002843 True 890 lncRNA 0.41 5 30074734 30079529

Neighbor

gene id symbol gene type direction distance location
XLOC_000357 pcca coding upstream 120889 29862074 ~ 29953746 (+)
XLOC_000356 zic2b coding upstream 213740 29831759 ~ 29860895 (+)
XLOC_000355 tm9sf2 coding upstream 250260 29798140 ~ 29824375 (+)
XLOC_000354 zc3h13 coding upstream 276728 29766725 ~ 29797907 (+)
XLOC_000353 cpb2 coding upstream 310575 29759678 ~ 29764060 (+)
XLOC_000359 vps8 coding downstream 4049 30083578 ~ 30310689 (+)
XLOC_000360 dre-mir-740 coding downstream 86424 30165953 ~ 30166065 (+)
XLOC_000361 BX255890.2 coding downstream 147862 30227391 ~ 30227505 (+)
XLOC_000362 tmem41ab coding downstream 342614 30422143 ~ 30438036 (+)
XLOC_000363 gpr183b coding downstream 472248 30551777 ~ 30554973 (+)
XLOC_000350 CR774189.1 non-coding upstream 566162 29507647 ~ 29508473 (+)
XLOC_000349 NA non-coding upstream 573601 29500308 ~ 29501034 (+)
XLOC_000348 CT573186.2 non-coding upstream 621902 29451465 ~ 29452733 (+)
XLOC_000347 CT573186.1 non-coding upstream 628916 29444452 ~ 29445719 (+)
XLOC_000346 BX908780.2 non-coding upstream 762076 29311527 ~ 29312559 (+)
XLOC_000365 BX548015.2 non-coding downstream 774440 30853969 ~ 30859524 (+)
XLOC_000369 NA non-coding downstream 1061590 31141119 ~ 31144527 (+)
XLOC_000370 NA non-coding downstream 1275056 31354585 ~ 31359319 (+)

Expression


Co-expression Network