LOC110499285 (olig3)


Basic Information

Item Value
gene id LOC110499285
gene name olig3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27748849 ~ 27750461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576326.2
GAGCGCTCTTTTACCTCACCACAGAGCAAGAGGTGCACCCGCGAGATAAGATTACTCGCAGCTATCCGGCCAACAAGCCCACTGTGTCGACTCCTTCGTTGTTACCTACACCTCCTTCCCAAAAAGAGGACGGAACTCAAACGACAGAATCGGGTGATAGAGTGTGACTTAAAAACAgggcagagatagagagggaagcaGCGACCTCCTACCCAAACCGAGCTAATAAAATGCATTCTGACTCCAGCTCGAGCAGATCTTCCTCACCAGACATGGATGGGATGTATCTCAGAGACCACCTCAATTCAGTGTCCTCGACGCAGAACGAACTCCTCCAGAAGATGACGAGCGAGCACCTTTCCAGGCACGGGGAAAAGTCACCTGGCGGGAGCAAGTACAAACTCAAGAAGCAAGTGACCGAGCAAGAGATTCAGCATCTGAGGCTGAAAATCAACGGACGGGAGCGCAAGAGGATGCATGACTTGAACCTGGCGATGGACGGCCTCCGGGAAGTCATGCCGTATGCACACGGTCCGTCCGTGAGAAAGCTGTCTAAAATTGCCACTCTGCTGCTCGCCAGAAACTACATCCTGATGCTCAACAGCTCACTGGACGAGATGAAAAGGCTGGTTGAAGAAATCTACGGCGGACATCATTCTACGTTCCACTGCGGGACAGTGAGCGGGCACTCTGGCAACCCAGCGCATCAGGTGCATCCGCTGCTCGGGAGCGCGCTGTCCTCGTCCACATCCTCCACCCTCACCACCACTTTACCGGGACTAACCTCCATCCGAGCACCTCATTCCCTAATGAAGAGTGCCCCTGCACCCCCTCTTCAACTCGGCAGCGGTTTCCAGCACTGGTCAGGTTTACCTTGCCCGTGCCCCATATGTCAAGTACCTCCACCCCCTCATATTCCTATCAGTTCAGCGGGACTGACGAGACTTACAAGTGAAAACAAGGACGTGATGAAGTAATTTGGGACATCCgatacagaatggtgtcaacGTGTACAGTAAATTGTGAATTGGACATGAAGAACGAACCTCAatgcatgcattgtttgtctGTTTATTTGTTTTTGCGTATGAGATACTCTAAATATCCTCCCTGTAACAAAGATCCTGTGAAAATACTTTTTTCATGGTAAAACTTTTGCCGGTTATTTGGTGTCACCAGAGATGCATTCACACAGTGTACATATgtttctttgtaaaaaaaaaaaactacttctAAAACATTAAGCTGTAGATGTCTGAATGTAACCTTACGTttcgagcactgaaggtgatcgtAGCACAACATACTTACTGTTCTGAAAGGGCGAAGAAAGTTGCATGCAGatttaatatttttgttttttacatcaTTTGTGAAAGTGAAGAATGTCCTTTCCTTGTAACAAGGATGGTGAAATCGCATTCTACAGTGTATGAACattgtattattatatatttagttcGAAAAAGGTTGGCATTATATGGATCTTGATTACTCCATAGAATTCTGAAAATGCTTTTAGCTTTGTGGCGTTATTCTGTGTCCATTTGTATGTAGAACTTCTTTAGCATGGCTTCAGAACAACTAAAGCATGATTGTTTTGCTGGAAATAA
>TU1922565
GGTGCACCCGCGAGATAAGATTACTCGCAGCTATCCGGCCAACAAGCCCACTGTGTCGACTCCTTCGTTGTTACCTACACCTCCTTCCCAAAAAGAGGACGGAACTCAAACGACAGAATCGGGTGATAGAGTGTGACTTAAAAACAgggcagagatagagagggaagcaGCGACCTCCTACCCAAACCGAGCTAATAAAATGCATTCTGACTCCAGCTCGAGCAGATCTTCCTCACCAGACATGGATGGGATGTATCTCAGAGACCACCTCAATTCAGTGTCCTCGACGCAGAACGAACTCCTCCAGAAGATGACGAGCGAGCACCTTTCCAGGCACGGGGAAAAGTCACCTGGCGGGAGCAAGTACAAACTCAAGAAGCAAGTGACCGAGCAAGAGATTCAGCATCTGAGGCTGAAAATCAACGGACGGGAGCGCAAGAGGATGCATGACTTGAACCTGGCGATGGACGGCCTCCGGGAAGTCATGCCGTATGCACACGGTCCGTCCGTGAGAAAGCTGTCTAAAATTGCCACTCTGCTGCTCGCCAGAAACTACATCCTGATGCTCAACAGCTCACTGGACGAGATGAAAAGGCTGGTTGAAGAAATCTACGGCGGACATCATTCTACGTTCCACTGCGGGACAGTGAGCGGGCACTCTGGCAACCCAGCGCATCAGGTGCATCCGCTGCTCGGGAGCGCGCTGTCCTCGTCCACATCCTCCACCCTCACCACCACTTTACCGGGACTAACCTCCATCCGAGCACCTCATTCCCTAATGAAGAGTGCCCCTGCACCCCCTCTTCAACTCGGCAGCGGTTTCCAGCACTGGTCAGGTTTACCTTGCCCGTGCCCCATATGTCAAGTACCTCCACCCC

Function

symbol description
olig3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and spinal cord motor neuron cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including brain; neural plate; neural tube; posterior neural keel; and presumptive diencephalon. Orthologous to human OLIG3 (oligodendrocyte transcription factor 3).

NR:

description
PREDICTED: oligodendrocyte transcription factor 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576326.2 False 1613 mRNA 0.46 1 27748849 27750461
TU1922565 True 878 TUCP 0.55 1 27749553 27750430
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110499284 NA coding downstream 57896 27683823 ~ 27690953 (-)
ifngr1l ifngr1 coding downstream 88571 27642229 ~ 27660278 (-)
il22ra2 il22bp coding downstream 116220 27628917 ~ 27632629 (-)
pcnx2 LOC106589667 coding downstream 139593 27581482 ~ 27609256 (-)
oprm1 LOC106589663 coding downstream 298119 27418452 ~ 27450730 (-)
LOC110499286 perp coding upstream 55408 27805869 ~ 27812533 (-)
fa36a fa36a coding upstream 110391 27860741 ~ 27864828 (-)
si:ch211-132e22.4 LOC106589684 coding upstream 116042 27866503 ~ 27869446 (-)
desi2 desi2 coding upstream 123413 27873874 ~ 27918683 (-)
zbtb18 zbtb18 coding upstream 230262 27980723 ~ 27989815 (-)
G1680613 NA non-coding downstream 39583 27708939 ~ 27709266 (-)
G1680608 NA non-coding downstream 44352 27704256 ~ 27704497 (-)
G1680599 NA non-coding downstream 59953 27688665 ~ 27688896 (-)
G1680518 LOC106589675 non-coding downstream 65059 27676652 ~ 27683790 (-)
G1680522 NA non-coding downstream 112052 27635730 ~ 27636797 (-)
G1681215 NA non-coding upstream 42685 27793146 ~ 27793956 (-)
G1681218 NA non-coding upstream 47011 27797472 ~ 27797718 (-)
G1681219 NA non-coding upstream 47370 27797831 ~ 27798647 (-)
G1681228 NA non-coding upstream 64988 27815449 ~ 27816961 (-)
G1681204 NA non-coding upstream 103095 27853556 ~ 27858066 (-)
sf3b5 sf3b5 other downstream 364241 27381985 ~ 27384608 (-)
G1680171 cog2 other downstream 467241 27280823 ~ 27283995 (-)
G1680017 NA other downstream 703555 27044782 ~ 27045294 (-)
si:ch1073-13h15.3 LOC107387676 other downstream 1386568 26360190 ~ 26365511 (-)
fbxw10 cdrt1 other downstream 1538970 26208532 ~ 26229024 (-)
G1681623 NA other upstream 722824 28473285 ~ 28474025 (-)
G1681658 NA other upstream 784834 28535295 ~ 28535809 (-)
LOC110499315 LOC106589727 other upstream 1790854 29541315 ~ 29571033 (-)
G1684661 NA other upstream 3361094 31111555 ~ 31113686 (-)

Expression

LOC110499285(olig3) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110499285(olig3) Expression in each Bioproject

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LOC110499285(olig3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network