abcg8 (abcg8)


Basic Information

Item Value
gene id abcg8
gene name abcg8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28316489 ~ 28331818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576362.2
GGCACATGGGGCACTGACCCCTATATCAGAACTTCCACCACCGCCTACAACTCTACAAACCATGTATACTGGAGGGACAGACAACAGGCCAGATCCAGAGACAGGGATCGTTGCCGGTGGCCACCCACAGACGAGAGGAGACACTGAGCTGTTCTCCTCTTCTGAAGAGGACAGTAGCCTGTACTTCACCTACAGTGGAGGTCGCAATGAGATAGAGGTCAGCAACCTGCACTATGAGgTGGACACAGCTGCTCAGATCCCGTGGTATGAGAAGCTCTCAGAGTTTAAGATGCCCTGGGAGATGAAGGGAGACAAGCAGACAGCCATAAACAAACTCAACCTGCGAGTCTGCAGTGGCCAGATGCTGGCCATCATCGGCAGCTCAGGTTGTGGAAAGACCTCACTGCTGGACGTCATAACGTGTCGTGATGAGGGTGGCTCCATGACGTCTGGCCAAGTGCTTATCAACGGGCAACCTAGCAACCCAAAGCTGGTGAGGAAGACCATCGCCCATGTCCGCCAGGACGACCGCCTGCTGCCTCACCTTACTGTGAGGGAAACACTAGCCTTCGTGGCTAAGCTACGGCTACCCACAAACTTCAGCCAGAAACAGAGGGACCAGAGGGTGGATGACGTCATTGCAGAGCTGCGTCTGCGACAGTGTGCCCACACCCGGGTGGGCAATGACTTGGTGAGAGGAGTgtctgggggagagaggaggagggtcagCATCGCTGTGCAGCTGCTCTGGAACCCTGGTATCCTGATCCTAGATGAGCCCACGTCGGGGCTGGACAGCTTCACGGCCCATAACCTGGTGATCACTCTGTCCCGGTTGGCCCGGGGGAACCGCCTGGTACTGCTGTCCATCCACCAGCCACGCTCAGACAtcttccagctctttgacctggtGGTCCTGCTCTCCTCTGGCTCAGCCGTCTACTGTGGGCCCGCTAAAGACATGGTTCCATACTTCACAGCCCTGGGACACCCCTGCCCCCGCTACTGCAACCCCTCCGACTTCTATGTGGATCTGATCAGTATAGACCGGcgcagcccagagagagaggctgagtgtCTGGAGAGGGCCAGGGTGCTGTCAGCCCAGTTTGTGGAGAAGGTGAGAGGGACAGATGACTTCATGTGGAAGCCAGAGGAGCCAAGCACAACCCTGGAGGCCATCACGGCCACTCAGTCCGCAACTCAGGAGGAAGTGATCACTATATCCAAACAAAAGGACCGCCTGCCAGGCCGACTACACCAGTTCACCATCCTCATCAGGCGGCAGGTGCACAATGACTTCAGAGACCTGGTCACTTTGCTGGTGCACGGCTTCGAGGCTCTGCTCATGTCTCTGCTGATTGGATTCCTGTACTTCGGGGCGGGGGAGGAGCGTCTGTCGATCCAGGACACAGTCGCCCTGCTCTATATGATTGGAGCTCTCACCCCATTCGCCGTGGTCCTGGACGTCATAGCAAAGTGTCACACAGAGAGAGCCATGTTGTACCATGAGCTGGAGGACGGCATGTATAACGTCACATCCTACTTCTTTGCCAAGGTCCTGGGGGAGCTTCCGGAGCACTGTGTGTTCACGTTGGTCTACGGCCTACCCATCTACTGGCTGGCTGGCCTGAACCAGGCCCCGGACCGCTTCCTGCTCAACTTCCTGCTGGTGTGGCTCATGGTGTACTGCAGCCGCAGCATGGCTCTGTTTGTGGCTGCAGCCTTACCCACCCTGCAGACATCAGCCTTCATGGGCAATTCTCTGTTCACTGTGTTCTACCTTACTGGAGGCTTCGTCATTAGCCTGGAGAACATGTGGTTAGTGGCGTCCTGGTTCTCCCATGCCTCCTTCATGCGCTGGGGCTTTGAGGGCATGCTGCAAGTCCAGTTCAGGGGACTCAAGTACCCTGTCTCCATCGGCAACTTCACCTTCAACATCGATGGCATACATGTGGTGGAAGCTATGGATATGAACCAGTACCCCCTCTACTCCTGCTACCTGGTTCTCATTGCTGTCGTAGTGGGCTTCATGCTGCTCTACTACCTATCACTCAAATTCATCAAGCAGAAGTCCAGCCAGGACTGGTGAAACCATGGTTACAGAAACCAGTCTCTGGCCTCATCCTAAACGGACTGTAAAACTAACCAATGCTCGTTTCAGTACCACCCTCTGCCATTTGATGGCAGCAAAGTACTGCATTCTGTGTAAATTAGTTTCAAtgagggatttaaaaaaaaatcttggcAAATGATTTGAACGCCACTCAA
>XM_021576364.2
GGCACATGGGGCACTGACCCCTATATCAGAACTTCCACCACCGCCTACAACTCTACAAACCATGTATACTGGAGGGACAGACAACAGGCCAGATCCAGAGACAGGGATCGTTGCCGGTGGCCACCCACAGACGAGAGGAGACACTGAGCTGTTCTCCTCTTCTGAAGAGGACAGTAGCCTGTACTTCACCTACAGTGGAGGTCGCAATGAGATAGAGGTCAGCAACCTGCACTATGAGgTGGACACAGCTGCTCAGATCCCGTGGTATGAGAAGCTCTCAGAGTTTAAGATGCCCTGGGAGATGAAGGGAGACAAGCAGACAGCCATAAACAAACTCAACCTGCGAGTCTGCAGTGGCCAGATGCTGGCCATCATCGGCAGCTCAGGTTGTGGAAAGACCTCACTGCTGGACGTCATAACGTGTCGTGATGAGGGTGGCTCCATGACGTCTGGCCAAGTGCTTATCAACGGGCAACCTAGCAACCCAAAGCTGGTGAGGAAGACCATCGCCCATGTCCGCCAGGACGACCGCCTGCTGCCTCACCTTACTGTGAGGGAAACACTAGCCTTCGTGGCTAAGCTACGGCTACCCACAAACTTCAGCCAGAAACAGAGGGACCAGAGGGTGGATGACGTCATTGCAGAGCTGCGTCTGCGACAGTGTGCCCACACCCGGGTGGGCAATGACTTGGTGAGAGGAGTgtctgggggagagaggaggagggtcagCATCGCTGTGCAGCTGCTCTGGAACCCTGGTATCCTGATCCTAGATGAGCCCACGTCGGGGCTGGACAGCTTCACGGCCCATAACCTGGTGATCACTCTGTCCCGGTTGGCCCGGGGGAACCGCCTGGTACTGCTGTCCATCCACCAGCCACGCTCAGACAtcttccagctctttgacctggtGGTCCTGCTCTCCTCTGGCTCAGCCGTCTACTGTGGGCCCGCTAAAGACATGGTTCCATACTTCACAGCCCTGGGACACCCCTGCCCCCGCTACTGCAACCCCTCCGACTTCTATGTGGATCTGATCAGTATAGACCGGcgcagcccagagagagaggctgagtgtCTGGAGAGGGCCAGGGTGCTGTCAGCCCAGTTTGTGGAGAAGGTGAGAGGGACAGATGACTTCATGTGGAAGCCAGAGGAGCCAAGCACAACCCTGGAGGCCATCACGGCCACTCAGTCCGCAACTCAGGAGGAAGTGATCACTATATCCAAACAAAAGGACCGCCTGCCAGGCCGACTACACCAGTTCACCATCCTCATCAGGCGGCAGGTGCACAATGACTTCAGAGACCTGGTCACTTTGCTGGTGCACGGCTTCGAGGCTCTGCTCATGTCTCTGCTGATTGGATTCCTGTACTTCGGGGCGGGGGAGGAGCGTCTGTCGATCCAGGACACAGTCGCCCTGCTCTATATGATTGGAGCTCTCACCCCATTCGCCGTGGTCCTGGACGTCATAGCAAAGTGTCACACAGAGAGAGCCATGTTGTACCATGAGCTGGAGGACGGCATGTATAACGTCACATCCTACTTCTTTGCCAAGGTCCTGGGGGAGCTTCCGGAGCACTGTGTGTTCACGTTGGTCTACGGCCTACCCATCTGCAGCATGGCTCTGTTTGTGGCTGCAGCCTTACCCACCCTGCAGACATCAGCCTTCATGGGCAATTCTCTGTTCACTGTGTTCTACCTTACTGGAGGCTTCGTCATTAGCCTGGAGAACATGTGGTTAGTGGCGTCCTGGTTCTCCCATGCCTCCTTCATGCGCTGGGGCTTTGAGGGCATGCTGCAAGTCCAGTTCAGGGGACTCAAGTACCCTGTCTCCATCGGCAACTTCACCTTCAACATCGATGGCATACATGTGGTGGAAGCTATGGATATGAACCAGTACCCCCTCTACTCCTGCTACCTGGTTCTCATTGCTGTCGTAGTGGGCTTCATGCTGCTCTACTACCTATCACTCAAATTCATCAAGCAGAAGTCCAGCCAGGACTGGTGAAACCATGGTTACAGAAACCAGTCTCTGGCCTCATCCTAAACGGACTGTAAAACTAACCAATGCTCGTTTCAGTACCACCCTCTGCCATTTGATGGCAGCAAAGTACTGCATTCTGTGTAAATTAGTTTCAAtgagggatttaaaaaaaaatcttggcAAATGATTTGAACGCCACTCAA

Function

symbol description
abcg8 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in arteriosclerosis; familial hyperlipidemia; gallbladder disease; obesity; and sitosterolemia. Orthologous to human ABCG8 (ATP binding cassette subfamily G member 8).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K05684 ABCG8; ATP-binding cassette, subfamily G (WHITE), member 8 (sterolin 2)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576362.2 False 2271 mRNA 0.55 13 28316489 28331818
XM_021576364.2 True 2190 mRNA 0.55 14 28316489 28331818

Neighbor

gene id symbol gene type direction distance location
cep170aa cep170 coding upstream 22801 28225910 ~ 28293688 (+)
akt3a LOC106589689 coding upstream 146717 28027289 ~ 28169772 (+)
adss2 LOC106589688 coding upstream 347167 27943767 ~ 27969322 (+)
lhb LOC100135809 coding upstream 449977 27864868 ~ 27866512 (+)
arfgef3 arfgef3 coding upstream 458394 27814389 ~ 27858095 (+)
ppm1ba ppm1b coding downstream 146982 28478800 ~ 28525093 (+)
slc3a1 slc3a1 coding downstream 193651 28525469 ~ 28534588 (+)
camkmt camkmt coding downstream 216675 28548493 ~ 28745581 (+)
six3a six3 coding downstream 517233 28849051 ~ 28852328 (+)
LOC110499307 NA coding downstream 560360 28892178 ~ 28936652 (+)
G1680703 NA non-coding upstream 14908 28299343 ~ 28301581 (+)
G1680975 NA non-coding upstream 39666 28276106 ~ 28276823 (+)
G1680969 NA non-coding upstream 54373 28261837 ~ 28262116 (+)
G1680968 NA non-coding upstream 55187 28261095 ~ 28261302 (+)
G1680964 NA non-coding upstream 60935 28255216 ~ 28255554 (+)
G1681025 NA non-coding downstream 76261 28408079 ~ 28408380 (+)
G1681035 NA non-coding downstream 137343 28469161 ~ 28470449 (+)
G1681062 NA non-coding downstream 138657 28470475 ~ 28470973 (+)
G1681066 NA non-coding downstream 143111 28474929 ~ 28475246 (+)
G1681090 NA non-coding downstream 206006 28537824 ~ 28544583 (+)
G1680230 NA other upstream 940670 27375354 ~ 27375819 (+)
G1679823 NA other upstream 1229026 27084426 ~ 27087463 (+)
G1679135 NA other upstream 1540809 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 1660378 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 1683291 26632095 ~ 26639269 (+)
G1681180 NA other downstream 385543 28717361 ~ 28726495 (+)
G1681792 NA other downstream 446188 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 1125410 29437357 ~ 29458499 (+)
LOC110499316 LOC106589729 other downstream 1240617 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 4322536 32654354 ~ 32661648 (+)

Expression


Co-expression Network