slc3a1 (slc3a1)


Basic Information

Item Value
gene id slc3a1
gene name slc3a1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28525469 ~ 28534588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576370.2
TACTATGGACCCTGTGACTAGTGCTACCTTTTACAGAGTTGTTTGAACGAATGATTACAAGGAGTCAGTTAATCTCAGCAAAGGATTTAGAAGTAGACGGTTACATGTTCATAGACATGAGCTCTGGTACAGCCAACGGTAGCAGTATGGAACTGGGGGAGTGCATCCAAAACACGGGCTTCCATGAGGATGACGAGACAGAGGATGCTGTTGGTGGAGACGAAGAGAACAGGACTTCGACGGTCAAGATGTCCCCGGGCAGAGAGGAGGATACTTATACCCAAATCAAACCTTACGCGGGCATGCCTAAAGAGGTCCTGCTTTTATATTCAGTCCAAGCTCGCTACCGACTACCCCGGGAGATCCTGTTCTGGCTGACCATTGTGTGCACCTTGGCGCTGGTCGCACTGACCATCACGGTGATCGTTATGTCGCCCCGTTGCCTCAGCTGGTGGCAGTCGTCTCCTGTGTACCAGATATACCCACGTTCTTTCAAGGACTCAGACAGCGATGGTATCGGAGACCTCAAAGGCATCTTGGATAAACTGGATCACTTTCAGTACCTGAACATCAAGGCCATCTGGATCAGTCCGTTCTACAAGTCTCCCATGAAAGACTTTGGCTATGATGTGGAAGACTTTAGAGACATCGATCCACTCTTTGGCTCCATGCAAGACTTTGATGACCTCCTCGCTGCCATGCATGACAAAGGGTTGAAGCTGATCATGGATTTTATCCCTAACCATACCAGTAACATGCACCAGTGGTTCAACCTCAGCAGTAGTGGACATGCACAGTACAAAGACTACTATATCTGGGCCAACTGCAATACTACCCATGCCCCCAACAACTGGGTGAGTGTGTTTGGGAACTCCTCCTGGACGTATGTTGAGGAGAGGCAGCAGTGTTACTACCACCAGTTCCTCAAGGAGCAACCCGACCTCAACTTCCGCAACCCACATGTTCGGAGAGAGATGACTGAGATCGTTCGTTTCTGGCTGGAGAAGGGAGTGGATGGGTTCCGTATGGATGCTGTGAAGCACATCCTAGAGGCCAAGCACCTGAGGGATGAGCCCCAAGTGGACCCACAACAAGATCCTGATACAATTGACACAGAGTTTGAGCTCCACCATGACTACACCACCACTCAGTTAGGGCTGCATGATATCCTGCAGGCCTGGAGGGGAGAAATGGACATCTACAGTAGAGAGCCAGGCCGATACAGGTTTATGGTAGCTGAGTCCTATGACTatgaggagactgaaaagaccaTGATGTACTATGGGACACCCTACGTTAAAGAGAGCGACTTCCCTTTCAACTTCTATCTGATGGACCTGCCAACTAATCTGACTGGAACTGGGGCTCAAGGCCTGGTCAATCTGTGGATGGCCAACATGCCAGTAGGGAAATGGCCAAACTGGGTGGTTGGGAACCACGATAAACCTCGTATCTCCTCCAGTGTTGGCCAGGAGTACATTAAAGTGATCAACATGCTACTGCTCACCCTGCCCGGCACACCCAGCACTTACTATGGAGAGGAGATAGGCATGATGAACATCAATGTGACCATTGACGAGATCCAGGACCCCTTTGGAAAGTTTAACCCTAATGCCAGTCGTGACCCTCAGAGGTCCCCCATGCAGTGGAGTGATGGGCCGAATGCTGGCTTCAGTGATGCCAATCATACCTGGCTGCCTTTGCACCCACACCACACAACAGTTAATGTGGAGGCTCAGCAGAAAGACAGCGGGTCAGTACTGTCTCAGTACCGGGCCCTGAGTCTCCTGCGACAGGCCCAGCTGCCTCTCCATCGGGGATGGATGTGCTACATCTGGAGCGATGCGGATGTCTTTGCCTTTCTGAGGGAGATAGACGGCTTGGACAAGGCTTTCCTCGTGGTGCTCAACTTTGGAGCGGACTCTGTTATAAACCTCTCGGCCATAACAGAGTTGCCGGAGCAGCTAACACTTCATATGAGTACCAAGCAGGAAAACTATGGGATGCCGGTGATTAAATCTTCAATTTCCACGGCGCGAGGGGAGGGGCTGCTACTTGAGTACTCCACCCACATGCGGTTCAACCCTGGCCACGCCTCCCAGTGTTTTGTCTCAGAGAAGGCCTGCTACCTGGGAGTCTTGGACATTCTGTATAAGTGCTGAGTACTGCAGCCTCAGAGTGGGAGGAGAAATCACCATGTCCTCGACAATCAAATGTGTTATGATGAGACTGGCTGTGATTGAGTCAGTGTTTGTTCAAAAAGTTTATTTGTTCTCATTAAAAACGGCATTCATTTTCCAAA

Function

symbol description
slc3a1 Predicted to enable catalytic activity. Predicted to be involved in amino acid transport. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cystinuria. Orthologous to human SLC3A1 (solute carrier family 3 member 1).

NR:

description
neutral and basic amino acid transport protein rBAT

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0043169 cation binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K14210 SLC3A1, RBAT; solute carrier family 3 (neutral and basic amino acid transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576370.2 True 2302 mRNA 0.50 10 28525469 28534588

Neighbor

gene id symbol gene type direction distance location
ppm1ba ppm1b coding upstream 376 28478800 ~ 28525093 (+)
abcg8 abcg8 coding upstream 193651 28316489 ~ 28331818 (+)
cep170aa cep170 coding upstream 231781 28225910 ~ 28293688 (+)
akt3a LOC106589689 coding upstream 355697 28027289 ~ 28169772 (+)
adss2 LOC106589688 coding upstream 556147 27943767 ~ 27969322 (+)
camkmt camkmt coding downstream 13905 28548493 ~ 28745581 (+)
six3a six3 coding downstream 314463 28849051 ~ 28852328 (+)
LOC110499307 NA coding downstream 357590 28892178 ~ 28936652 (+)
LOC110499309 prkce coding downstream 593151 29127739 ~ 29280630 (+)
LOC110499310 epas1 coding downstream 751297 29285885 ~ 29356101 (+)
G1681066 NA non-coding upstream 50223 28474929 ~ 28475246 (+)
G1681062 NA non-coding upstream 54496 28470475 ~ 28470973 (+)
G1681035 NA non-coding upstream 55020 28469161 ~ 28470449 (+)
G1681025 NA non-coding upstream 117089 28408079 ~ 28408380 (+)
G1680703 NA non-coding upstream 223888 28299343 ~ 28301581 (+)
G1681090 NA non-coding downstream 3236 28537824 ~ 28544583 (+)
G1681137 NA non-coding downstream 103028 28637616 ~ 28638002 (+)
G1681162 NA non-coding downstream 154104 28688692 ~ 28729427 (+)
G1681791 NA non-coding downstream 242783 28777371 ~ 28777600 (+)
G1681797 NA non-coding downstream 249686 28784274 ~ 28784491 (+)
G1680230 NA other upstream 1149650 27375354 ~ 27375819 (+)
G1679823 NA other upstream 1438006 27084426 ~ 27087463 (+)
G1679135 NA other upstream 1749789 26700392 ~ 26775680 (+)
LOC110499259 LOC106589644 other upstream 1869358 26654584 ~ 26656111 (+)
LOC110499256 LOC106589642 other upstream 1892271 26632095 ~ 26639269 (+)
G1681180 NA other downstream 182773 28717361 ~ 28726495 (+)
G1681792 NA other downstream 243418 28778006 ~ 28778409 (+)
lhcgr lhr other downstream 922640 29437357 ~ 29458499 (+)
LOC110499316 LOC106589729 other downstream 1037847 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 4119766 32654354 ~ 32661648 (+)

Expression


Co-expression Network