LOC110499307


Basic Information

Item Value
gene id LOC110499307
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28892178 ~ 28936652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469936.2
CCTAGTTTAACTCCTCATGTGCGCATTGATAACCTCTGGTGTAATTAACCATGCATTGTAGAGTATTTAATGCACATGCGGATATGACAAATTaacaaggcaggcaggcaggcatcccGTGGGCACACATCCCCGGGAACTGTACAATGTGGAATACTGTAACATTAGAGCAAACGCACAAGGTGcctgaataacaaaacaaaggTTGAGAGAGGTGTATTCTGCTGAGAGCGCGGAGAGCTCGCGCTCTCTACGGCTTTCTGAGGGGAACGAGAGCTCCTACTTGATGCTGCCGGCGGAAAGTGCGCGCTGCAGGGCGACGGCGCAGTCACATGCGCCCATCAAAGCCTCTGCTGCAAGCGGGAGGAACCTGGCAGTGACAGGCCGAATCAAGGCCTACACAGGAAGGAGTACTGGAAGGACTGAGGAGATCTTGTCTTAATgtacagacagaccaggaggcaAGCTGGCAGCAGAGAGAGGCCACCTTGGGCATAAGAGGTGAGGCCTACTCTTAACATCACACCTCCAGCTAACCCCACCCCCAATCTCCAGCTTCAGCCAGAAATTGGCCTGCCACCTCAGTGGATATGGACAGAGAAAGCTGCGATTTAGCAGGTTTCTTGGCAAGGACAAGACCTAGCGAGCGGATTGCCTATCCGTGTTTTGGGGCGATTAGAACCAGATGGGTCAGGTTGTGCCCTCCCGCCAGGCTAGGGCAGTGGAGTGACTGTCACTCAGACCCATCTGGGGGGGAGGCATGTTATGGCACTGAGGGTGTAAGTGTAAACAGTCTCCGTTATATGACTGACACTCAGTTTTGGTGGTAGACCTGACATCCTCCATTTGACACAGAAACATAGAGGAATACAGCTAGAGCCAGCTAGAGAGAAAGGGAAACATGCTGGAGAGGGACTGGAGAAGAGAAAAATATTGATTTTTGAAAATTAGCACCCAGGGTAGTGAGATGGCAGGAAGAAGGGAGATACACATTTAGAAGAATTCCTTTAAAGATTATCATGAAACATAGATGCATTTTAGCTTTGTCTACGCCTGATGAGGTTTAAAGATAAGCACACATGGAAAGGGAAGGGGGAAGGAGGTGCTGTGGTGACTCTTCTCCTTCCTTTCATTCTTTCATTCTGCCACTTTCTCCTGATCAGGTTTCTCCCGGTCTATCAGCTGAGTGGTCGTATGGGGTTTGATCAATGGCAGGAAACCAGCAGATCAAATGGTAATTTATCTGAAAAAGATAGGCTAGCATCTACACAACCATGCCTCTGAgctacaagctctcacagtctcatgcCAAGAATTAAATGTTAATGATTTTCAAATGTCAAATTCAGAAGTTGTTCCAATTAAGTTTTTGGCATTATCTTcgaattcttaaggttaggcattaactcagaaaggttaaggtaaggtttgGGATATgattaaaacaaaaatattaaaaaacaactttctattgctGGTGGTTCTCCTTGTGTTGTGggggttgtgtgtagtgtttttcCCCATAGTACACAGTAACGCTGAGGGTGGATGCATACAGCACACCTAGGGGGTTATTTAATATGCACAATTattactcactcactctccaccAGCTGTATGCAAATATACAACATATTGCCTTGGGTCTCTGTGGAGAACCTCACTACTCGCTCCGACTCACCATAGGCTTTTATCTGTAATTATACTACACACTAAATTCATCTCTAGGTTTATTGATTTTGATATTTTTTATTACCATTGTTCAACAATGCGCAATAAGGGATTGCAGTGGTGTTTCCATTTGGCAGTTGTTTGCTGTAATTCTGAAATAGTTTAAACCACTTGATTGTATTATGCATTTTAAATACATGTTATGAGCTGATATTGGATTAATTGCCCACATTCTCAGAatgttctatttttgttacatATTAAAGTACTTAAATAGGATACGTTTGCTCACGTATAATGGATTTCAGCAGACAATGGACCCCCTTCTTGTGAATTAGAATCGTCCCCAAGGGCAAAACTCGAACTGAACTACAATGGGATATTGCTACAATGCTTTCCAAGAAATAAGACAatatttagtatttattaggatccccattagctacagccaaggcagcagctactcttcctggggtccaaataTGAATAAAAACTGTTGCATCTAAACAAAACAGCCGCCTACATCATAAATATAACTATATatcatacaatacattattacatcttTACTTGAATATTACACATTTACAATATAAAATGTACAATACTACAATAATACAatattacaatgtgtgtgtgtctagtgtgtgtgttagagtgtgtgtatgcgtgtgtttgtgtgtgtctcttcacagagagacacacacgttGTGCCGTGAGGTATTGTTTTATccgttttttaaatctgattttacCGTGCGTTTCCCAGAGTTTTTtatggacttggggactgtgaaaagacccctggtggcatgtcttgtggggtatgtatgggtgtctgagcagTGTGTTAGCTGTTTGAACATACCGTTTGGTGCTTTCAATATGTGAATTCCTCTCACAAAAACAAGtgtcctctactttgagccaggagagattgacttcatgtTATTGATATTAGCCCTCCAATATTAGCCCAAATACTGTATTTTCTATGGCATATCTGGAAACACTTAATTGACACCACAATGCCTTTACAGTAATGATTTGTATCTAATCTACTAACTGAGCTGAGGTATTGTTCTTTCGTGAGGAGAGGGGTGTTCCTAATCTGAGCCCGATACAATGTGGTGCTGTGTTCCTAATCTGGGACCCTTACAGTAGGTTCTCCTGCCACCCCTTGTAACTCTTTGCTTCTGTCAAAATAGACATTCTCAAATTGAATTAAGGTCCTGTTCTGTGCTGCACCCCCACGGACCCCTTCGAGCGCTCTCCTGAACCCCCTTGGTCCGGTCCTGTTCCCCTCATCCAGCCGCCTCGGACTAATTAAAACCAATGTGGCCTTGTCTTCACTGGATTAACTCTAACGAGGATTCACTGACTCCACCAGCATGTGCCtcttgatgagagagagagagacagagacagagacagagatagacagaaaaAAAATGGGAGGATTTGTCCAGGCAACCTTAGCCTTGAAACCCAACACTTAATTCACTACAGATGATACAGAAAAggtggaagagagaaagagagaaagagacaaatatactTATGTTGATAGTTTAAATCactagtgtgtgtagtgttttaaAAACTGTTAGTGAAACAATTGAAACGTGGGCTTATTGTGAAGAGAGTCATAAAATGGACCTCTGGTCAGCCCTCTTTGAATCCATTTGATTCCATCATACAGAGAGAGGAATGCCAATTctctttctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgccaggGGCAGAGAAAAATGTAATTCTCTGTCTTTGATAATGCATTAATAATAAAATGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469936.2 True 3545 mRNA 0.43 5 28892178 28936652

Neighbor

gene id symbol gene type direction distance location
six3a six3 coding upstream 39850 28849051 ~ 28852328 (+)
camkmt camkmt coding upstream 146597 28548493 ~ 28745581 (+)
slc3a1 slc3a1 coding upstream 357590 28525469 ~ 28534588 (+)
ppm1ba ppm1b coding upstream 367085 28478800 ~ 28525093 (+)
abcg8 abcg8 coding upstream 560360 28316489 ~ 28331818 (+)
LOC110499309 prkce coding downstream 191087 29127739 ~ 29280630 (+)
LOC110499310 epas1 coding downstream 349233 29285885 ~ 29356101 (+)
trnaa-ugc-146 NA coding downstream 453668 29390320 ~ 29390393 (+)
ankrd1a LOC106589708 coding downstream 487042 29423694 ~ 29428859 (+)
lhcgr lhr coding downstream 500705 29437357 ~ 29458499 (+)
G1681914 NA non-coding upstream 7210 28884672 ~ 28884968 (+)
G1681897 NA non-coding upstream 16126 28875825 ~ 28876052 (+)
G1681870 NA non-coding upstream 36345 28855561 ~ 28855833 (+)
G1681846 NA non-coding upstream 56943 28834917 ~ 28835235 (+)
G1681835 NA non-coding upstream 63298 28828681 ~ 28828880 (+)
G1682002 NA non-coding downstream 14618 28951270 ~ 28951508 (+)
G1682005 NA non-coding downstream 16679 28953331 ~ 28953537 (+)
G1682008 NA non-coding downstream 19875 28956527 ~ 28956746 (+)
G1682067 srbd1 non-coding downstream 105497 29042149 ~ 29043742 (+)
G1682072 NA non-coding downstream 110658 29047310 ~ 29050892 (+)
G1681792 NA other upstream 113769 28778006 ~ 28778409 (+)
G1681180 NA other upstream 165683 28717361 ~ 28726495 (+)
G1680230 NA other upstream 1516359 27375354 ~ 27375819 (+)
G1679823 NA other upstream 1804715 27084426 ~ 27087463 (+)
G1679135 NA other upstream 2116498 26700392 ~ 26775680 (+)
LOC110499316 LOC106589729 other downstream 635783 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 3717702 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 4240641 33177293 ~ 33196167 (+)
G1687675 NA other downstream 5389185 34325837 ~ 34326254 (+)

Expression


Co-expression Network