LOC110499309 (prkce)


Basic Information

Item Value
gene id LOC110499309
gene name prkce
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29127739 ~ 29280630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956130.1
CTGTTGCGTCGCACTCCCCCATCTGGCATAGACAAGACGCGGCGCGCCGAGAAACTGACGTGTTTTGCGCATTTCCTGCAGCAGCGTTTAGACGGTCGGGGGGGAGAAGAGGTAGGTCTGCAGGAAACCAAGAACAGCAACGGCGAGAGAACATCCTGGGAGGATAAGGAGCGAACAGAAACCAAGAAAACCACAACCTAGAGTCGACCTGCAACTATACATTGCTTGAGCTATTCACAAGTCGAGTAGCCTGTTTGGGAAACATCCCAAATGCACTGCAAGGAGGGCAGGAGTCGCCCTATCTTCCAACAGTGGAATACGAGTGTTTCCAGAGCCTAGTGGAGTTGCAGAGGATAGATATCTTTGATATATTTTGCTCTGTCGGGTTGCGGTTTGGGTAGGCTGTTGATATCCCAACTGCTGCATGGTCATATTTTTCCTGCGTATACGCTTCTCAAAACGTGTATTAATTATATTCAGAAGAAAGGCTTTGTCTGGTTAAAACCCAAATGTGGATTATCATTGTGAAAACCGAAACTGTTAAAGggcaaaaacaagaacatttactGTCTCTGGACTGTTTCAAAACGACTGATAAGCATCCGATTGGTACGTGTGTGATAGAGTGACACGGGACGGCATTTTCCCCTTATATTCAAGTCACAACCTCTTTGAAAAACCATTCAGTCCGTGGTCTTATTTTGAGGATTCAAACGCTACATAAAACTAGGCTAAATTATTTATGACCCGTTGAAGTGGCTGGGTTAAAGGAATATATTGTAAACAACCATTCTTGTTCCAAAGCCCATTGAAGAGGATTACATCACCGCAATGGTGGTTTTCAATGGGTTATTGAAGATCAAGATTTGTGAGGCGTTGGACTTGAAACCGACGGCTTGGTCTCTCAGGCATGCGGTTGGCCCAAAAACCCAGACTTTTCTCCTAGACACCTACATCGCACTAAACGTGGATGACTCGCGTGTGGGCCAAACCTCCACCAAACAGAAAACCAACAGCCCTGCGTGGAACGACGAGTTCGTTACGGAGGTGCATGACGGAAGGAAAATCGAACTGTCGGTGTTTCACGACGCGCCAATTGGATATGACGATTTCGTGGCTAACTGCATCATACAGTTTGAAGATATATTGCAGAATGGCAGTAAGCACTACGAGGAATGGATTGACTTGGAGCCTGAGGGGAGGGTGTACGTCATCATGGACCTGTCTGGATCGTCTAGTGAAGCTCCAGGCTCCAGTGAGAATGCAGAGGAGCGTGTGTTTCGGGAGCGCATGCGGCCAAGGAAGAGGCAGGGTGCCGTACGAAGGAGGGTCCATCAGGTCAACGGACACAAGTTCATGGCCACATACCTACGACAGCCTACCTACTGCTCCCACTGCAGAGACTTTAtatgGGGTGTGATCGGGAAACAGGGCTACCAGTGTCAAGTGTGCACGTGTGTAGTCCATAAGCGCTGCCACGAGCTCATCATCACAAAGTGTGCTGGGATGAAGAAAGACAAGGAGGACACTACACCAGAGGAGGTTGGATCCCAGCGGTTCAGTGTTAATATGCCTCATAAGTTTGGTATTCACAACTTCAAAGTCCTAACCTTCTGTGACCACTGTGGATCACTATTGTGGGGACTGCTCAGACAAGGGCTGCAATGCAAAGTCTGTAAGGTGAATGTACACAGACGCTGTGAAAGTAACGTGGCTCCTAACTGTGGGGTGGACGCGAGGGGCATCGCCAAGGTTCTGTCTGACCTGGGGGTCACACCAGACAAGATCTCCAGCAGTGCCCAGAGGAGGAAAAAGATAACCCAAGAACCCCAGCAGCCGTTACCATGTACCCCCCAGACAGAGGAGGACCGATCCAAATCGGCCCCCACCTCCCCATGTGACCAAGATCTGAAAGAGTTGGAGAACATCCGCAAGGCGCTGTCGTTTGAGCAACGTGGACAGGAACACAAGTCagcctcgtcctcctcttccagCAGGGTGGGGGTGGGCTCAGAGGTGGGCGAGGCCCGAGAGAACGGAGAACTCAAGATCATCCAGACCAAGAGGATGACCCTGCAGGACTTCCTCTTCATCAAGGTCCTGGGCAAAGGCAGCTTCGGAAAGGTGATGCTGGCTGAGCTGAAAGGAACTGATGAAGTGTATGCTGTGAAGGTGCTGAAGAAAGACGTGATCCTGCAGGATGATGATGTGGACTGTACCCTGACAGAGAAACGCATCCTGGCCCTGGCTAGGAAACACCCCTACCTGACCCAGCTCTTCTGCTGCTTCCAGACCAAGgaCCGTCTGTTCTTTGTGATGGAGTACGTGAACGGAGGAGACCTCATGTTCCAGATCCAGCGTTCCAGGAAGTTTGACGAGGCGCGCTCTCGCTTCTATGCCGCCGAGGTCACGTCTGCCCTCATGTTCCTTCACCAACATGGAGTAatctacagAGATCTGAAATTGGATAACATCCTGTTGGATGCACATGGCCACTGTAAGCTGGCTGACTTTGGCATGTGTAAGGAGGGGATTCTCAACggagtcaccaccaccaccttctgCGGGACCCCTGACTACATCGCTCCTGAGATCCTACAGGAGCTAGAATATGGCCCCTCTGTGGACTGGTGGGCTCTGGGGGTGCTTATGTACGAGATGATGGCGGGCCAGCCCCCCTTCGAGGCTGACAATGAGGATGACCTGTTTGAGTCCATTCTCCACGATGATGTCCTCTACCCAGTGTGGCTAAGCAAGGAGGCAGTCTCCATCCTGAAAGCGTTCATGACGAAGAGTCCAAACAAGCGTCTGGGCTGTGTGATCACCCAGGGCTTGGAGGAGGCCATCAAGGTTCATCCTTTCTTCAAGGAGATCGACTGGGTTCTGCTGGAGCAGAAGAGGGTCAAACCACCCTTCAAACCTCGCATTAAAACCAAAAGGGACGTGAACAACTTTGACCAGGACTTCACTCGCGAGGAGCCTGTCCTCACCCCTGTAGAAGACGCCATTATTAAGCAGATCAACCAAGACGAGTTCAAGGGTTTCTCCTACTTTGGAGGGGAGGAGACTCTGTCCTaaggcctgcacacacacacacacacacacacacagatgctgtCTGCCTCATCTTTGTGTTtatgcacacacaccaacacacacacatgcatgtatagacacacatacatgtatatgcagaaacactgacaaacacactcgcattcacgaacacacacacatacataaattcTCACATACAGACATCCAGAaatatactgtacaatacataCAGAGTAAATTATTacattcacacactcatacaaCACTCCGGCCATTAGGGCCTCTGATTAGTAACAACTTCAAAACATAAACCTGATCATCTACAGCGCTGTACCAGTATATTTTTCTGTCTGTCCATCAGTGCATGTTTTCTATGTTAAAAATCTATGTAATTCGAGAGTAGGTCATATAGGAAGCCCATCTGCTTTATTATCAAGTTCCTATTGGCTGGTCCAGATCACTCCTGATCCAATCAGAgcggtaaaaaaaaacaactcatTGTGGTGGTGGGTGGCCAATGGATTGGCCGCCTGAGACTGAATATAGCCTGGCCCTTGGCCCGGGCTGATAACAGTGATGAAAGCTCCTCACAGTCCTGCCCCAGATTATGTCACAAGGCCCTTTCCAGTGGACTATGAAATGAACAGGGAATGTTTGTGTGACGGTGTCAACTTTATGTGTATATAAGGATTAAAAGGTCAGGGGTTATGTGTGCTTTGGGCAGGGGTCTTGTTCGACAAGGTCTTCGTACGATAGGTCATACTTTCAACTGTTTCGACAAATATCCTAGTTCCTCAGTGAGTATATGACACTGAAACAATGatattattatattaatctgTAATTTCTCAAGCTGTCCTTTAAGTCTCTCGATGTACTAGAATCTCCTCTGTCGTGTTTGAATGCGAAAAACCAAATCCTTAGAACCAATGATTGTATTTAAAAAAGCTATAAAAAAAACGATTGGTTCACAGTATCAATAAAAAAAGAGAAGCCTGTAACTATTGATACTGTTTCAAAGTTTCCTCACGATCAAAACGACGCCAGAATTAGAATGTGTCCATGTATAGTACATCAAATGCCTTTTGTGTGTAACTGCGAACCAGTTACGTATTGTAGATATGCCCACAGTGTTATGGTAGTCTAGATTCATATATTCCAAATGAATGCCATGGGTTTCAATGTGGAAGAATGTGCTTGTATGCATGAGTGATCGTGGGGATACAACTGAATGTATCGCATCTAtttgcgtgcacgtgtgtgtgtgtgtctgttagtatACTGCGAGGTAGTAGTTTGTGCGAGTTTGTTTTTGAGTGTGCGATATAGGCAGTGGGTTCATGAGAATGGCCCCTTTGAAGCTTTTTACATTTCATTGGGTCATTTTTATTTCATTGTGTGTTTTATTTCATTATGTTTGATTTGTCGTGATTTTACTGGATTGTCTTGTTGCTCAGAGTTTGAAATCCTGGATTTCCCTGCTATGCAACAAGACTCACAATCATGTGGGTGAAGGCATCACCAGATAGCCGTGTCCTTCCCTCTGTACAGACCACCTTGTATATAGAAGCCTGTGGACTTCTTGGAGAAATAGAGGTATCATCCTTTGCATGGTCATGCATATGATATTATTGTGTATTATTAGAATATGAAAACGTTACAATGTCCATGTGCAATATTCTGTGTATGTTTCTGTCTGTTTTtgctttccctttctgtcttgcCGGGTGTCTTCACTGTTCTTCCCTCCgctctttgctgttgttctgtttgGTTTTTACAGTATATGCATGGCTGTTTTCATTAGCCTGTCCTCAACTCAGCTGATAGCCATGTCTATGTGCTTCCTTCAGAATGCTCCATCAAACCACCCCACCACCCCTTTCCCCGCCCTCTCTTCTTAACTCTCTTTGAAAAGGTCAACATTTCCTATAGCATATCTCTTTAAAACATCAATGTAACCAAAGGTAGCAAAGCTATTGGATGAATTCATTTTATGGAAACCATTGACCTTCTTAATGCACTCATGCCTAATAACTCTCTGACCAGTATATGGTTTATTGCAGGCCTACACCAAATCAAGGTAAAGTCCAATCTACTCTCAAATTCTATCAATAACCATGTTGCTTTGTTTCAATACTGCAAGTAGTACATTCCATTTTGGAGTAGAAACTTTAAAGTAACGTTTGAAATTTGGAGTGATAGTTGTAGGACTATTTGCAATTGAAGAGGCAGGGGTGGCACTGTGGTAGTGAAAGTAGCAGTACTGTAGAAGGAGCCGTAGCATTTGTtattgtagtagtagttttagtagtGTAGATGTAGTATTATTAGTAGCATGTATAATAGTGCTAGCTCCACTAGCAGTAGCAGTTATGGTATGGGGAGCAGAAGTAACTGTAGCAacagtggtagtaacagtagtaacagtggtagtaacagtagtaatagTGGACAGTATCATGGCATCAACTGTCAAAGCAATACTGATCAAGCAGTATTTAAAAGGCTTTAAACATGCCTCTCATACTGGATCCTGAAAATGCTTAACGCCcccccagcacacacaccacTGCATGTAGGCCTTTCATACACCTAAAGCGCCCATGCATTTGACACGTAGGCACCTGTGTGAATGGATCACATGATCCCCCTCTGTTACCCAGTTAGTGCATAGCAACATGAGAACCGTGTTAAAGGATCTGAAGGTGAAGAGGACATTTGACAGACGTCACCATTCAGGCTGGCACAATGCTGTTTCCTTATGCCAGTTTTTTAGGATGTAACCGTTACAGTACTTGTCTCCCCTCGTATAGCTCATATctaccctcttctctctgtctgtatcgtGTCCTTTAGTTTCATTTACCTGTCTCTTTGGTTTACAGTCTCTCTGTTTTGTCTGTGCTTCTCGATGTTAGGCCTCTTATGTTTGTGTTTTGTAAGATGACGGATCCCTGTCCTAGGGTGGCCCTGCAGGTCCAAAATCCTCCATGCCAAATGCTAACTCCAATTGTCCATCCTCCTTCTTTTATTTGGACTCTTTAAAGTGTTTGTAATAGGAAGAAGAAAAGAACAGCACATAGGAAACCCATTTGGTCTGTTGTAAAGTCATTGAACCAGTAACGCTCAAtaagtataatatactgtacatggcTGGAGAAGTACCTCTTAAATTGTGTGTAAAAATATGTCCGGCTGAgtattatgtattttttttacatacagtaGAATAAAACATACAGACATATGCATTATATTACTGTATGTACCTCTACATTTAGGATCGGTTTCCCGGACCCAAATTAAGACTActtctggactaaaaagcatgttcAATAAAGAATATCTATTGAAATTGCTTTTTAAACCAAGACAAGGCTTAGTTCTGGGTCTGGGTAACCAGATTTAATTTTCGGTTTCTGTATTGTGAAGCTTTATATGTACAATTTGTCACCTGACTGATGTTTTATTTTGAATTCCTTTGCCATGTATTAGTGTTATGTCATTGTAAGCATTTTGCTGTGTGccaaatgtactgtattctaAAGGATGTGAAtgtgtattgtttgtttttggaaCCTATTAAATATGATGATGTCAAAACAAACAGTG

Function

symbol description
prkce Enables enzyme activator activity; enzyme binding activity; and protein kinase C activity. Involved in several processes, including peptidyl-serine phosphorylation; positive regulation of cellular glucuronidation; and positive regulation of epithelial cell migration. Located in several cellular components, including cytosol; endoplasmic reticulum; and intermediate filament cytoskeleton.

NR:

description
protein kinase C epsilon type

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K18050 PRKCE; novel protein kinase C epsilon type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956130.1 True 6672 mRNA 0.45 15 29127739 29280630

Neighbor

gene id symbol gene type direction distance location
LOC110499307 NA coding upstream 191087 28892178 ~ 28936652 (+)
six3a six3 coding upstream 275411 28849051 ~ 28852328 (+)
camkmt camkmt coding upstream 382158 28548493 ~ 28745581 (+)
slc3a1 slc3a1 coding upstream 593151 28525469 ~ 28534588 (+)
ppm1ba ppm1b coding upstream 602646 28478800 ~ 28525093 (+)
LOC110499310 epas1 coding downstream 5255 29285885 ~ 29356101 (+)
trnaa-ugc-146 NA coding downstream 109690 29390320 ~ 29390393 (+)
ankrd1a LOC106589708 coding downstream 143064 29423694 ~ 29428859 (+)
lhcgr lhr coding downstream 156727 29437357 ~ 29458499 (+)
mertka LOC106589725 coding downstream 189401 29470031 ~ 29508296 (+)
G1682128 NA non-coding upstream 5211 29121845 ~ 29122528 (+)
G1682122 NA non-coding upstream 12494 29114854 ~ 29115245 (+)
G1682118 NA non-coding upstream 16486 29110719 ~ 29111253 (+)
G1682072 NA non-coding upstream 76847 29047310 ~ 29050892 (+)
G1682067 srbd1 non-coding upstream 83997 29042149 ~ 29043742 (+)
G1682426 NA non-coding downstream 80103 29360733 ~ 29361016 (+)
G1682427 NA non-coding downstream 82206 29362836 ~ 29363209 (+)
G1682440 NA non-coding downstream 101766 29382396 ~ 29382601 (+)
G1682418 NA non-coding downstream 115185 29395815 ~ 29396294 (+)
G1682489 LOC106589727 non-coding downstream 260722 29541352 ~ 29543464 (+)
G1681792 NA other upstream 349330 28778006 ~ 28778409 (+)
G1681180 NA other upstream 401244 28717361 ~ 28726495 (+)
G1680230 NA other upstream 1751920 27375354 ~ 27375819 (+)
G1679823 NA other upstream 2040276 27084426 ~ 27087463 (+)
G1679135 NA other upstream 2352059 26700392 ~ 26775680 (+)
LOC110499316 LOC106589729 other downstream 291805 29572397 ~ 29588171 (+)
G1686317 LOC106589755 other downstream 3373724 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 3896663 33177293 ~ 33196167 (+)
G1687675 NA other downstream 5045207 34325837 ~ 34326254 (+)

Expression


Co-expression Network