LOC110499324 (LOC106589740)


Basic Information

Item Value
gene id LOC110499324
gene name LOC106589740
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 30219786 ~ 30241466 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956153.1
CATCCTCGGTTCATTCCTTCACTCGCCCCACTTCATTTCTCTAGCAGGGACGTCCCGTTAACGGGAGGGCTGAAAGGGGATAGCAAATCGGctgcattttctctctctccctctgccattTTGAGAGAAACCTGTCGGCCTCGCATATTGGGATTTCTGCTGTTTTAACGGAAAATAAGAATCATGACCTGATTGTTGTTATTTCGGGATTTGTGTAGAACTGTTTCAGCAGGGAAGACCCTTGTGGCGGAGTCTGAGGATAACGCCAACAACAGAAGCAGGAAGTGCTGACTTGAACCTTGACACCAAACAACCAAAGCCATGTGCTCTGTGAACAATCCAAACTGGGTGACCTTCGAGGATGAGGGGAGAACGTCTACGTCTCCTTCTTTTGCCTCAACCCCCTTGAAGATCCCAGAGAGTGGGACAAAGTTGGCCGCAACACCCCTGAAGTCACCAGGGGCAAAGACAAGTTCACCCCCTTCCTTTGCCTCTACACCCCTGAAGACAGCCCCAGGTAGTGTGACAACGACAGGGTTAAAGACAATCCCCCGTCCCAATGGACTAAAGCTGATACTGCCCCCAGTGGGAGATCCATCCTGGATCTTCAGCAGTTCCCTTGAATCCAGCTCCCCTCCAATGCACTTTAACCTCAATGGAAGTTCCTGTGTGCCCTGCAACACTCCTCTTTGCACTCCGGTGAGGGAGGTTCCTCCTACCGGCGCGTTACCTTTCCATTGCAGGCCCTGGGATCAGCACGATTTCTTCAGTAGTTTTTCCAGTTCATCCTCTGCCTCTGTGCCTTATTCTTCTTCTCCCCCTGGCCCAGACCAGGCCACCACTACCGGCACCACCACACATCTCCAGGGTGACGTCTCTGTCTCCGATGGCCCCAGTACCTTCCCCTCCTTCCAGGGGGACCCGGGACATTTCAACCCATTCTGGGAGGGGGCTGGTGGGCATAGCGTGGACTCTGGAAGCTCATCTTCCGACTCCGATGCTGGAGGTTCTAGTCTGCCTCGCTTCTTCATTCGGACGAAAGACGGCAACGAGCCTCCTCGACCAGACCACCTCCAGAGCTCCTACTCCTACATCTGCCACAAGCTGGAGGGCCTGCGGGCCGAGGAAGAAAATAACACAGAGGAAGGagtagggatggagaggggggagaggagaggagtaagagacAGGGAGGCAGCCAAGGAGGGACCATCCCCAGCCTTTGTCTCTCACGGTCTGTTCCGTAGCGAGAAGAGAGACGGCTGGTCTTTAATGCTGAGGATCCCAGAGAAGAAAAACCGAATGTCGTCCCGACAGTGGGGCCCCATTTACCTGCGTCTGCTGTCTGGAGGTGTGCTCCAGATGTACTATGAGAAAGGACTGGAGAAGCCCTTCAAAGAGTTCCAGCTGCAGCCTCACTGCAGGTTGTCAGATCTCAAGCTAGAAAGCAATGGAGAGCCTCGCAAGATCCAGACAGTTAAGGTGGAGCACGTGTCTTACACAGAGAAGAAGCGCTACCACCCCAAGctGGAGGTGTCCCACGAGGCAGAGGTGGAGCAGCTGCTGAAGTTTGGAACCACGGAACACGGCGACATGGAGGACCTTTTCGAAACTATGGAGGAGGAGCTTCTCAGGCTGGCGCCGCCGCTGTTGCAGAAACGGCACTACGACGAACAGGAGATGACACTGCAGATCACAGACCACCTCTGGGTGCAGCTGGACAAGGACGGTGCATTGATGGACCGGGCGGCCATGACGAGGATCCACTGCCTGGCGTTCCTCAATGGCCCAGGGGAGTGCTTCCTGGCTCTCAACGACTTGGGGCTTCTCCGCTTCGACGCCAGCTACGGCTCTGGCTCCGAGGAGGATGACCTCCTGGAGGGCTGGATGGAGATCAGTGACTGCTACTTCCACAAGTGCATCAATGACTTGGAGTTCCACAGGTCTCGGCTGCTCAAGTTCTCCCCTCCGGATGCCTGTAGAGTAGAACTGATGCGCTACAAGACATTAGCCCTGGGAAGTACCGAGCTGCCCTTCTCCGTCAAAGCTGTGGTGACTGTCCAAGGGGCCTACGTGGAACTCCAAGCCTTTCTCAACATGTCAGCATTCTTCCCGTCATTTATCAGCGTGTCGGAGACTCAGCCACTCTGCGAGAATGTCCTGATCCGTGTGCCGGTACCGGGGGACTGGGTGAAGGTGTCGCGTACAGTGACGTTGCTACGACGTAAGTCACTGACGGCCAGGATGAACCGAAACGCGTGTCTGGGGTCAGTCAGCGCTTCAGAGTCACAGCCAGTCATGCAGGTTACCGTGGGGACGGTCAAGTATGAGAATGTGTACTCAGCCATAGTGTGGAGGATCGACAGACTGCCTGCTAAGAACATGGCAGTGGACCATCCCCATACCTTCTCCTGTAAGTTAGAGCTTGGTTCAGACCAGGAGATCCCCAGTGACTGGTATCCGTTTGTCACAATGGAGTGTGACATGGTGGGGGCCGTGGTTTCACAGACCAGAGTGACGTCAATGGGCACAGAGAGTGACATTCAGCCTCAGAAACATGTCACCAGTAGGACCCACTATCATTGTCAGGTAGAAATTGAGAAGAAgtggattgagacagaagcacaAGGGCAATCAGGCTGCACAACACAGTAATGATTATGATCAAGGAAGTCTTAAAGGATCAAGTCTCACATTACCATACTCCCAAGTCTCGTTAGTCGTAAGGAAGCCTGGAATTGAGGCTATACACTAGATGCCTATTTCCTTGGTCCAAGACATTTTTGCCAACCAAACTCATCCTCGCTGTTTCAATACAAGGACAAATGTTTGAAAGGGACATAATCTACATGTGGCTGATGAACAATTGTGCTTTTATATTTTGTGTTTGTGGTGTATACTTTATCACCTttaagtctgtcataatattgttTGGTCCTATTGTACTCCTGTATGTATGGATATTAACATGTTGTTTATCCTGGGTGCCAGACATgacaagagagcagaaacagactggcagccAGGCTAGTTCTAACCTGCACGGTAGAATAGAATTAGGCTACAACAAACAAATATATTATCATTGGAAGAACAAACAACCGAACACACAGCCCTACCATCACAATGCACTTTACATTTCTCTCAGAAGATTATTCATTGTGAAATGACAGGCGGTTGAAGAAGCTCTCTTTATAAAAGAGTAAATACCACATATAATCTTGTAGGCTTGCATTTAACACACTCAAAAGGACTGGTTTTTTTaggcacaggaggctgctgaggggaggacagctcataataatggccggaatggagcaaatggaatggcatcaaagacctggaaaccatgtgtttgataccattccacctattctgctactgccattaccacaagcccgtcctccacaattaaggtgccaccaacctcatgTGAGATTAGGCTAAAtctagtcctctgtagctcagttggcagttgcaacgccaggatagtgagtttgattcccgggaccacccatacataaaatatactgtatgcatgcatgactaagtcgctttggataaaagcatctgctaaatggcatatattattattattatataaaaaGCACCTTCAATGTAGATTCTCAATTGAGCTTGCTTTTCGGTCCAGGACAAGGCTCGATCTGTCTCTGGGAAACAACCCATAGTGTTTTCAAAAACTATCTGGAATGAATTTCCAATTAAGACAATTAGGCTAATTATATAAATGTCCTGTCATTTGTTGACTAGCTAGCTGACCATGGTCCTTTTGCACAGCTAAGCATGTGCACTCATCTATTATTCTATAAGTCAATATCATTGACTTATGGTTATATGAAGTAGCCCACATACATTATGGTCCCATGTACTTGCCACGTCAGGGCTGTGGGTTCGATGCCCACGGGGGGGGGGGACCAGcacgaaaatgtatgcactcactactgtaagtcattctggatacgagtgtctgctaaatgactcaaatgtattaCTAATTACAATATTTCAGAGGGGGCTCTAGAGATGCAGCAATGGTCTGCGCTCACTAAAGAAACTATATAACTACATTTATTAAATGTGTTGTATGTGTATATGAATTAAGTGGTAATTATTAACAAAACAAATTAAAGATATCTGCATTTTATGCCTGTGTTTGTGAAATGGTAGAGGTGTAGATCAAAAgttgcaacctggtctcagagcattttgtattattttgaTTGTAAATCCAGGACAAACCATTTAGCATGATACGTTATGTTTCATGTGATATGCATTCATTTGCGGATGTCCATCATACATTTACGGGGTTCGTACAGACAatggcaagtcaaattcaaggactttcaaGTACTTTTTCAAGCACTAGTATTTATTTTCAAGGACCATCCATTTGTAATAGTTCCTATTATGCAATTGTTCTAGTCACCACCAGATAGCAGTATATTGCCACAATcttgtaaaaaaaactaaaaacatacTATTCATCACTACCTTACAAGTTCTACTCAATAATATGTGTTTCACTACTTATTTACTACATACATGAGTGATATGTCAGTACTGATgatgttgactgatttccttatatgaactgtaactcagtaaaatctttgaaattgtt

Function

NR:

description
stonin-1

GO: NA

KEGG:

id description
K20067 STON1_2; stonin-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956153.1 True 4645 mRNA 0.48 7 30219786 30241466

Neighbor

gene id symbol gene type direction distance location
LOC110499323 ppp1r21 coding upstream 2139 30194269 ~ 30217647 (+)
msh6 msh6 coding upstream 159599 30025625 ~ 30060187 (+)
LOC110499316 LOC106589729 coding upstream 631615 29572397 ~ 29588171 (+)
tmem87b LOC106589726 coding upstream 683367 29510861 ~ 29536419 (+)
mertka LOC106589725 coding upstream 711490 29470031 ~ 29508296 (+)
LOC118942000 NA coding downstream 1198811 31440277 ~ 31440996 (+)
LOC110499596 NA coding downstream 1253628 31495094 ~ 31511177 (+)
erlec1 LOC106589745 coding downstream 1472240 31713706 ~ 31725878 (+)
wdr27 wdr27 coding downstream 1581294 31822760 ~ 31978074 (+)
thbs2a thbs2 coding downstream 1792733 32034199 ~ 32073088 (+)
G1682915 NA non-coding upstream 7112 30201261 ~ 30212674 (+)
G1682751 NA non-coding upstream 86900 30108711 ~ 30132886 (+)
G1682759 NA non-coding upstream 230865 29988103 ~ 29988921 (+)
G1682761 NA non-coding upstream 312503 29906873 ~ 29907283 (+)
G1682671 NA non-coding upstream 441706 29777627 ~ 29778080 (+)
G1683718 NA non-coding downstream 223466 30464932 ~ 30465276 (+)
G1683787 NA non-coding downstream 270569 30512035 ~ 30512248 (+)
G1683800 NA non-coding downstream 282930 30524396 ~ 30524636 (+)
G1683802 NA non-coding downstream 283690 30525156 ~ 30525418 (+)
G1683804 NA non-coding downstream 283992 30525458 ~ 30525751 (+)
lhcgr lhr other upstream 761865 29437357 ~ 29458499 (+)
G1681792 NA other upstream 1441377 28778006 ~ 28778409 (+)
G1681180 NA other upstream 1493291 28717361 ~ 28726495 (+)
G1680230 NA other upstream 2843967 27375354 ~ 27375819 (+)
G1686317 LOC106589755 other downstream 2412888 32654354 ~ 32661648 (+)
LOC118942060 LOC106589768 other downstream 2935827 33177293 ~ 33196167 (+)
G1687675 NA other downstream 4084371 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 5140243 35381609 ~ 35384567 (+)
G1689347 NA other downstream 5439901 35681367 ~ 35682437 (+)

Expression


Co-expression Network