Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118942000 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 31440277 ~ 31440996 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036955550.1 | True | 720 | mRNA | 0.63 | 1 | 31440277 | 31440996 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499324 | LOC106589740 | coding | upstream | 1198811 | 30219786 ~ 30241466 (+) |
| LOC110499323 | ppp1r21 | coding | upstream | 1222630 | 30194269 ~ 30217647 (+) |
| msh6 | msh6 | coding | upstream | 1380090 | 30025625 ~ 30060187 (+) |
| LOC110499316 | LOC106589729 | coding | upstream | 1852106 | 29572397 ~ 29588171 (+) |
| tmem87b | LOC106589726 | coding | upstream | 1903858 | 29510861 ~ 29536419 (+) |
| LOC110499596 | NA | coding | downstream | 54098 | 31495094 ~ 31511177 (+) |
| erlec1 | LOC106589745 | coding | downstream | 272710 | 31713706 ~ 31725878 (+) |
| wdr27 | wdr27 | coding | downstream | 381764 | 31822760 ~ 31978074 (+) |
| thbs2a | thbs2 | coding | downstream | 593203 | 32034199 ~ 32073088 (+) |
| agpat4 | LOC106589751 | coding | downstream | 682990 | 32123986 ~ 32144750 (+) |
| G1684946 | NA | non-coding | upstream | 3784 | 31436253 ~ 31436493 (+) |
| G1684937 | NA | non-coding | upstream | 9466 | 31430597 ~ 31430811 (+) |
| G1684881 | NA | non-coding | upstream | 55002 | 31384983 ~ 31385275 (+) |
| G1684866 | NA | non-coding | upstream | 67704 | 31372290 ~ 31372573 (+) |
| G1684835 | NA | non-coding | upstream | 93427 | 31346574 ~ 31346850 (+) |
| G1685047 | NA | non-coding | downstream | 79429 | 31520425 ~ 31520782 (+) |
| G1685172 | NA | non-coding | downstream | 163213 | 31604209 ~ 31604473 (+) |
| G1685173 | NA | non-coding | downstream | 163591 | 31604587 ~ 31604907 (+) |
| G1685201 | NA | non-coding | downstream | 186492 | 31627488 ~ 31627715 (+) |
| G1685202 | NA | non-coding | downstream | 186887 | 31627883 ~ 31628106 (+) |
| lhcgr | lhr | other | upstream | 1982356 | 29437357 ~ 29458499 (+) |
| G1681792 | NA | other | upstream | 2661868 | 28778006 ~ 28778409 (+) |
| G1681180 | NA | other | upstream | 2713782 | 28717361 ~ 28726495 (+) |
| G1680230 | NA | other | upstream | 4064458 | 27375354 ~ 27375819 (+) |
| G1686317 | LOC106589755 | other | downstream | 1213358 | 32654354 ~ 32661648 (+) |
| LOC118942060 | LOC106589768 | other | downstream | 1736297 | 33177293 ~ 33196167 (+) |
| G1687675 | NA | other | downstream | 2884841 | 34325837 ~ 34326254 (+) |
| LOC110499396 | LOC106589821 | other | downstream | 3940713 | 35381609 ~ 35384567 (+) |
| G1689347 | NA | other | downstream | 4240371 | 35681367 ~ 35682437 (+) |
