Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110499531 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 32612958 ~ 32613933 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Toll-like receptor II precursor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110499531 | True | 769 | mRNA | 0.42 | 2 | 32612958 | 32613933 |
32,609,200
32,609,600
32,610,000
32,610,400
32,610,800
32,611,200
32,611,600
32,612,000
32,612,400
32,612,800
32,613,200
32,613,600
32,614,000
32,614,400
32,614,800
32,615,200
NC_048584.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499334 | LOC106589753 | coding | upstream | 136793 | 32291265 ~ 32476165 (+) |
| kcnk1b | kcnk1 | coding | upstream | 350781 | 32245903 ~ 32262177 (+) |
| agpat4 | LOC106589751 | coding | upstream | 469494 | 32123986 ~ 32144750 (+) |
| thbs2a | thbs2 | coding | upstream | 539870 | 32034199 ~ 32073088 (+) |
| wdr27 | wdr27 | coding | upstream | 634884 | 31822760 ~ 31978074 (+) |
| LOC110499339 | LOC106589759 | coding | downstream | 76154 | 32690087 ~ 32702525 (+) |
| LOC110499338 | LOC106589757 | coding | downstream | 88858 | 32702791 ~ 32736730 (+) |
| LOC110499341 | LOC106589760 | coding | downstream | 133658 | 32747591 ~ 32760047 (+) |
| LOC110499344 | LOC106589763 | coding | downstream | 235764 | 32849697 ~ 32863389 (+) |
| LOC110499532 | hpse2 | coding | downstream | 449102 | 33063035 ~ 33132825 (+) |
| G1686274 | NA | non-coding | upstream | 21436 | 32590909 ~ 32591522 (+) |
| G1686272 | NA | non-coding | upstream | 25426 | 32587107 ~ 32587532 (+) |
| G1686268 | NA | non-coding | upstream | 31077 | 32581536 ~ 32581881 (+) |
| G1686256 | NA | non-coding | upstream | 55529 | 32557209 ~ 32557429 (+) |
| G1685830 | NA | non-coding | upstream | 72344 | 32540182 ~ 32540614 (+) |
| G1686292 | NA | non-coding | downstream | 7344 | 32621277 ~ 32621527 (+) |
| G1686294 | NA | non-coding | downstream | 10329 | 32624262 ~ 32624464 (+) |
| G1686296 | NA | non-coding | downstream | 12599 | 32626532 ~ 32626835 (+) |
| G1686302 | NA | non-coding | downstream | 27555 | 32641488 ~ 32641702 (+) |
| G1686303 | NA | non-coding | downstream | 28116 | 32642049 ~ 32642286 (+) |
| LOC110499316 | LOC106589729 | other | upstream | 3036400 | 29572397 ~ 29588171 (+) |
| lhcgr | lhr | other | upstream | 3155037 | 29437357 ~ 29458499 (+) |
| G1681792 | NA | other | upstream | 3834549 | 28778006 ~ 28778409 (+) |
| G1681180 | NA | other | upstream | 3886463 | 28717361 ~ 28726495 (+) |
| G1680230 | NA | other | upstream | 5237139 | 27375354 ~ 27375819 (+) |
| G1686317 | LOC106589755 | other | downstream | 40421 | 32654354 ~ 32661648 (+) |
| LOC118942060 | LOC106589768 | other | downstream | 563360 | 33177293 ~ 33196167 (+) |
| G1687675 | NA | other | downstream | 1711904 | 34325837 ~ 34326254 (+) |
| LOC110499396 | LOC106589821 | other | downstream | 2767776 | 35381609 ~ 35384567 (+) |
| G1689347 | NA | other | downstream | 3067434 | 35681367 ~ 35682437 (+) |
