LOC110499339 (LOC106589759)


Basic Information

Item Value
gene id LOC110499339
gene name LOC106589759
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32690087 ~ 32702525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576423.2
AAGAGCGAGAAAAATAACCAATCGCATCACTCGTATCTTCTAGCGTCAAAGATAGCTGTCCATGTCCACCCATTCTGTTGCTGTCTTTTCAATTTGAACATTTCCGTGTATTCCTTATTTTCGGAGCTTAATCAACGCAAAGGAATATATCACTTATGGCCGCCTACAAGCTGGTGTTGATCCGCCACGGAGAGAGCAACTGGAACCAGGATAATCGATTCTGCGGCTGGTTTGACGCAGATCTGAGTGAGACTGGAGAAcgggaggcgaggagaggaggacaggcccTGAAAGATGCTGGCTATGAGTTTGACGTGTGCTACACCTCAGTCCTAAAGAGGGCCATCCGCACTTTGTGGCTGTGTCTGGACAGCATTGACCAGATGTGGCTTCCCGTCCACCGGACCTGGCGCCTCAACGAGCGCCACTACGGTGGCCTGACGGGATTAAACAAGTCGGAGACTGCCGCCAAGCACGGAGAGGCTCAGGTGAAGATCTGGAGGCGGAGCTTCGATATCCCTCCTCCCACTATGGATCCGGACCACGACTTCTACACCGTCATCAGCAAGGACCGTCGTTATGGCGACCTGTCGGAGGAGCAGCTTCCGTCTTGTGAGAGCCTGAAGGATACCATCGCCCGGGCACTGCCCTACTGGAACAACGAGATTGTCCCCCAGATCAAACAGGGCAAGAGGGTTCTCATTGCTGCCCACGGCAACAGCCTCAGGGGCATTGTCAAGCACCTGGAGGGTATGTCAGAGGAGGCAATCATGGAGCTGAACCTGCCCACAGGCATCCCCATCCTGTACGAGCTGGACAAGAACCTGAAGCCCGTCAAACCCATGCAGTTCCTGGGGGATGAGGAGACCGTCAGGAAGGCTATGGAGGCCGTGGCAGCCCAGGGCAAAGCCaagaagtagagggagagagagggggcactTTGTGTATCGTGCAGTAGGAAGTTGCACTTATCTAGGATCAGATTTTAGCCTCCCACCAATTCCCAACCTTTCATTAGGAAGGAAGCATGTATAACTGACCCTAGATCATTCTCTGTGGGAAGCTTCATTCTACTCCATGTGGCTCAGAGTAGGGGTAAAGGGATATGGGTCGGAGTAGAGGGTCAACAATACTACAGCTCTCAAAGGAGCTCTCACACACTCTGTACATGCAGTCCAAGAAACAGGCACTAAGAATGTGTGTTCATAGTCAACTCTACTGTGCATAGAACGTTTTAAAAAATGATTATAAAGTAACTAATAAGTTAGTATAAGTGGATATTTATTGACCAAGCTACTTATATGGGGACCACTGACTATCAAATCACACAGTCATCATTCCACTGGCTTATTACTGTTTCTGTAAGTCCAACAAAAGTGTTTCCCCTGTTTGACGATGGATCACTGAGATTACGAATGTGGTGATGAAGCCTCGTTTATTTGAAAATAGTTGGTCTTGCGTTATTATACTTCCAAGTTTCTCTAGAAAATAGTATATATTTAGATGTTAGAGAATAATTTTTGCACTTAAAAATGTAAACAGTCATGTGATTTCTACCcaaagaaaacaacaacaaaaaaatagccAAATTAATAAACAGTTAAAACCACAAGAAGGGAGAAATAATTCATATTTGCACAACACACACGGTTGTACTGGTTCTTCACTTTTTGTTTTCCTTTGCCCTGTCTGTGGTTGCGCAATTCACTGTATAACCACATCAGAAGTTGGACGACAGTGTCCATCTCCTCTTAAGGATTCGCCCCTTTTTTCCCCCatattttcgcctaaaatgacatacccaaatctaactgcctgtagctcaggacatgAAGCAAGGATacgcatattcttgataccatttgaaaagaaacactttgacgtttgtggaaattaatgtaggagaatataatacattagatctggtaaaagataatacaaagaaaaaaaacatgctttttcaattttttttgttccatctttgaaatgcaagagaggcCATTCATTATATGACTTAGGAGTCTAGGTACAacttagattttggccactagatggcagcagtgtatgtgcaaagttttagactgatccaatgcaCCATTGTATTACTGTTCAAAATGTcttcccaaatgtgcctaattggtttattgatacatttaagtacataactgtgcactctcctcaaacaatagcatggtattatttcactgtaatagctactgtaaattggacagtgtagttagattaacaataattaaaGTTGTCtacccatataagacatgtctatttCCTGGAAAGTTTGCTTTTACTTACAactgtcatgctaatcacatcagtgtacgttagctcaactgtcccggtATAGGGACACTGGTCCTGTAGAGGTTTTTAAGAGCTGTGGCAGAGACCAAATAGCTCTTTCTCCCATGCCCCCTTCCCTTGATGTTGCTTCTGTGTGTCATGTAAAACCACATCAGAAGTTGACTGAATACCTTTCCTAGCCTTGGATGGTGCTTCTATGTGCAAGTACTGCTGTTTGTAACATGTTTTTCCATCCCATTTCCTCTTGAGTAGTGTGTCCCATTGATACTGTTTTGTCAGTGGGATCAAACGTTTGGTACCTGCACTGTCGGTCTGTTTCTGCTTTAGCCTACACCAGTGGCATTCAGGGCTAAACATTCATAGATGCAGATAGAAATAGATTGCACGTAACAGACCAACTCGCTTCTTCCACGTCCAAGCGAGCTGATTCGTTTATATACGTTTCATTTATATCTTCAACTTTGTGAGCATTCCACAATCTATGAGTAGGCCCATACTCTAAGTGCATCTTAACCACCCTGTCTGCTGCTAGAACCACTCTTCTACTCTGAAAAGATTTGTGTTAATTTTACTTGACGTTTGCCTTTTCTGTTTGTAACACCTCTAAGTGGGAAAACTGCAATGCAAGTACCCATTCCTATAGGATATGCCTGTTCTATCCTTCCCCAGTCGTTCCCAAGACATTCTCCTTTGACATTGGCAACAATCTTCTGACTGAAAGGAAAATCCTTTGTAATAAAAGGTTATTTATTAGTGTTAAACTTCATTGTAATGCACTGTTTCTGAAGCCTGTGCTGAACCAATAAATGTGt

Function

NR:

description
phosphoglycerate mutase 1-like

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function

KEGG:

id description
K01834 PGAM, gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576423.2 True 3131 mRNA 0.43 4 32690087 32702525

Neighbor

gene id symbol gene type direction distance location
LOC110499531 NA coding upstream 76154 32612958 ~ 32613933 (+)
LOC110499334 LOC106589753 coding upstream 213922 32291265 ~ 32476165 (+)
kcnk1b kcnk1 coding upstream 427910 32245903 ~ 32262177 (+)
agpat4 LOC106589751 coding upstream 546623 32123986 ~ 32144750 (+)
thbs2a thbs2 coding upstream 616999 32034199 ~ 32073088 (+)
LOC110499338 LOC106589757 coding downstream 266 32702791 ~ 32736730 (+)
LOC110499341 LOC106589760 coding downstream 45066 32747591 ~ 32760047 (+)
LOC110499344 LOC106589763 coding downstream 147172 32849697 ~ 32863389 (+)
LOC110499532 hpse2 coding downstream 360510 33063035 ~ 33132825 (+)
LOC118942060 LOC106589768 coding downstream 482539 33177293 ~ 33196167 (+)
G1686333 NA non-coding upstream 11631 32676395 ~ 32678456 (+)
G1686303 NA non-coding upstream 47801 32642049 ~ 32642286 (+)
G1686302 NA non-coding upstream 48385 32641488 ~ 32641702 (+)
G1686296 NA non-coding upstream 63252 32626532 ~ 32626835 (+)
G1686294 NA non-coding upstream 65623 32624262 ~ 32624464 (+)
G1686310 NA non-coding downstream 4302 32706827 ~ 32707141 (+)
G1686352 NA non-coding downstream 42343 32744868 ~ 32745219 (+)
G1686362 NA non-coding downstream 69703 32772228 ~ 32772613 (+)
G1686364 NA non-coding downstream 72855 32775380 ~ 32775589 (+)
G1686366 NA non-coding downstream 73895 32776420 ~ 32776670 (+)
G1686317 LOC106589755 other upstream 28439 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3113529 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3232166 29437357 ~ 29458499 (+)
G1681792 NA other upstream 3911678 28778006 ~ 28778409 (+)
G1681180 NA other upstream 3963592 28717361 ~ 28726495 (+)
G1687675 NA other downstream 1623312 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2679184 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2978842 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2998695 35701200 ~ 35702156 (+)

Expression


Co-expression Network