LOC110499341 (LOC106589760)


Basic Information

Item Value
gene id LOC110499341
gene name LOC106589760
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32747591 ~ 32760047 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956203.1
CCTTTACAGGAATATTTTCAATTTCTttatcatcagagtcaaataaaCATAACATTTCACATTTAGAAACATTCAGTTTTAATCCTGATGCAATAGAAAATGCAGTTATAGCTCAACCAACCACATTATGTTAACGTCCAAAAGCGGCCGTCGCGTCACAGGCTCTCTTCTCACTTCCCCTGAAAACCGGAACATCCGGTTGTTGGGGTTTCGGCAGAGGCAAGCCTTTCCCAAACACTGCGTGGACCTGTCCGCTCTGGGGACTGAGGGAGGCGGGGCGTGGAAACGGTGTACGACCGGTAAACATCTGGGATGGGAATGTAAAAAACTACCAACGGTACGCGAACACGAAACCGCCTTAGACGGAGTGCCATCGGGGCATAAAGTAAAGACTGTCCATCGAGATTCCAATGGAAGCGGATGGTTTCCCGAGAAGGCATCGGATGACAGCGGAGACAGCAGGCGGGAACGCCGGGGTTGCTGGAGCCTCAGCCGGCGCAGAGGTCCGATGGTTCAGTGGAAGGATCTGGGGAGTGTCGGAGAGCCTCGTTGGGAATTTGTCTCCCCGGATCGGAGGCGATGCAGAGATCCAGACTGTTCAGTTTAGCGGTGGCCCTCCTGAAATAGCAGATGCTTCGGAACCGGAGTATGAGGGTTTGCCGCAAGGCGCTTCCACCAGCACCCACATGTTTGCAGGAGCAGTGGCTGGGATCATGGAGCATTGCCTGATGTTCCCCATCGACTGTGTCAAGACGCGAATGCAGAGCCTACAGCCTGAGCCTGCCGCCCGCTACCGGAATGTGATGGACGCGCTTCGGCGAATCATAACCACAGAGGGTGTCTGGCGACCAATGAGAGGGCTGAATGCCACGGCCGTGGGGGCAGGACCGGCACATGCTCTCTACTTTGCCTGCTATGAGAAACTGAAGAAGAGTCTGGGTGACATCATCCATCCTGGTGCTAACAGCCACCTGGCCAACGgtaCGGCAGGGTGTGTAGCCACATTGCTTCATGACGCAGCCATGAACCCATCTGAAGTGGTGAAGCAGCGATTGCAGATGTATAACTCTCCATACCGCGGCGTGATGGACTGTGTGCGTGCCGTGTGGCAGAGCGAGGGCCCTGGGGCCTTTTACCGCTCCTACACCACCCAGCTCACCATGAACGTCCCCTTCCAGGCTCTCCACTTCATGACCTACGAGTACCTCCAGGAGCTGCTCAACCCCCACAGACAGTACAACCCCTCCTCACACATGGTGTCTGGAGCCCTGGCCGGGGCCATCGCTGCTGCAGCCACCACCCCTCTGGATGTCTGCAAGACCCTGCTCAACACCCAGGAGTCCCTGGTGGGGCTCCCCGCTGCAGGCCAGGGTGGAGGTCaggggacacacagacacatcacgGGCCTGGCCCATGCCTTCCGGACAGTGTACAGGCTGGGTGGCCTGCCTGGGTTCTTTAAAGGAGTCCAGGCCAGGGTGATCTATCAGATGCCCTCCACAGCCATCAGCTGGTCCGTCTATGAGTTCTTCAAGTACGGAATCACCAAGCACCAGCACGAGAAGAGGGTCGCGCTGCAGCGGGAGGAAAAATAAATCATGTCCTATTTTCTTTCAGCCATATCTCTTCACCATatcttcctttttttttttaaatctatcaACCTCCTTCCTTTTCCTTTGGAGCAGGTGTTCAGAGCGAGGGAGAAATGAGGAAGAATCGACACGCACATAAACCAACCAATACCCACCTTATTTACCCCGTTCAGACTGCCAATAAGACACTTCCATCTGTGGCTCAACCATCAACATCTCTGCTAAACTGTTTGAAACTGAGAATTTACAATACACTATGAAAGTGAATATGTGATGTATTGACGGTACGTGTTCAATGTATACCCATATAACGCACATAAACGTCAACCTGAAAGAGATGCTTCTGTTTTACTCCAGCGGATTTAGTTGTGAAATATGTGAAGTGTCCAGCACCTTTCATAGAGTATTGTTGGGATGAATTTGACGACAGCTGTTCTGTCGGTGTTCTTAAAGGCAGACTGTGACCTCATCATACACAGACAGTTGGCCACTTCCTGCTTTCGGAAATTAACAACAAGATTGTCCAATTGAGGCGCAGATTGGAAATAGCCAGTAGTGGCGGTCATCTTGGCAGATTTGGATTCTGTTATTGTTATGTGTTAGCGGGAAGTCGCCCAGCTTTGTATGATGATCTATTACGGAGTCTACCTGTAGTGTTAATTCTTGCGTTTTAATGTATCTGGATGAGAATGTTGTTCACTGTAAGCCCCACCAGGGGGCACTGTGACCATCCCAATAAAGCTCTTGAGTAATATCATTTGGCCAGGTGTGAGTGACAGTGGGCCTTTAGGGGGCATTTGTGTAAACCCAGACAATTGTTTATAGGCTTCAGGCACAAGATCGCCTTAACCCCAGGCCTAGTATCAGTTTGTCATTTTGTGAACTGGTAGAGACGTAACCTCTTCTTGAGGTTTGAAATCAGGAATTTCTCTCAAAATATAGacttaaataaatatataacttAAATATATTGCTGCCAGCAAGTTGTAAAGTACAGTAAATATATTCTGAGAGGAACTATTGAGTTAAAGTGATTCCTGAACCCCTACAGTACTAACGTTGGTTGGTTTTCACTTTGGCTTTGGTATATAGAAAGAATGGAGAGAATCACCATGGATCTTTGGACAATTCATTGGAAGATAAATTCCATCTTGCCTTGTTATTTGCACTGATGTAAGgagagtggggtggggtggggtggggggtttgCCCAGATCTCACTTTGTACTTTTGCTTTGAGTAGATCAAATTCTTGGATGGGTTAGCCCACACAGGTGACAGGTAGCTTAGCGCTTAAGAGCGTTTGGAccgtaactgaaaggttgctgattCAAATCCACGAGCCGACCAGGTTTTAACATATACTGATGAGCCCTTGAGCGACGCACTTAATCCTGATTGCTCCTGTATGTCGCTCTGCATTTGACTAAAATAACTCCAATGTAAACACACTTCAGTTTACAGTCACACCCTTGTTTTACCTAGACTGACTGGCTGTTCCTGTATTAAAAAGAACACATGAAGGTTTAGACAGGACAGCTTGGCTAAAACAGAGGCTGACTGGCACAAACACAATATGGATTCCCACGCATGAAGCAAAATCTACACTACAGAAACATGTTTACATCATGTGAATGTTACGGTCTGGCCCTGACTCGAAAGGGTCAAGAAGGAAAGAGCTCATGTTTCAGGGGAACTTCCATTGAAAGGTTTCTGCACAAGTCATCTGTTTGTTTAATAGGCCGCACTGAAGACTTCAGGTAGAAGTAACcgttagacacagatctaggatcagcttcctctcCCGAAATACTAACTTAACCATTGGAGAGAATGCTACACTGGCCTTAGATCAGTGGCTAGGGGTGTGACGTCATTATACTGTTGTGTATTAACTATTACATGAATTGATTGATTAAGGGACTTATCCATGACACTCGGTGTGTATGGCTGTGTTtatacaggcagcccaattctgatctctTAACAATAATTGGTATTTTTACCAATCGGATCCGATAATTGGACACAaggtcagaattgggctgcctgtgtaaatgtagCCTATGTGgcctcagctgtgtgtgtggatgatgaATGCAGCTGATCAGTCTTCTTGACCTCTGTCTGACTGTCCCCTGTAATCCTGTCTGATCAATAAACAGAGCAGTAGACTCCC

Function

NR:

description
mitoferrin-2-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15113 SLC25A28_37, MFRN; solute carrier family 25 (mitochondrial iron transporter), member 28/37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956203.1 True 3774 mRNA 0.48 4 32747591 32760047

Neighbor

gene id symbol gene type direction distance location
LOC110499338 LOC106589757 coding upstream 10861 32702791 ~ 32736730 (+)
LOC110499339 LOC106589759 coding upstream 45066 32690087 ~ 32702525 (+)
LOC110499531 NA coding upstream 133658 32612958 ~ 32613933 (+)
LOC110499334 LOC106589753 coding upstream 271426 32291265 ~ 32476165 (+)
kcnk1b kcnk1 coding upstream 485414 32245903 ~ 32262177 (+)
LOC110499344 LOC106589763 coding downstream 89650 32849697 ~ 32863389 (+)
LOC110499532 hpse2 coding downstream 302988 33063035 ~ 33132825 (+)
LOC118942060 LOC106589768 coding downstream 425017 33177293 ~ 33196167 (+)
LOC110499352 LOC106589767 coding downstream 456225 33216272 ~ 33262134 (+)
LOC110499354 NA coding downstream 714893 33474940 ~ 33517443 (+)
G1686352 NA non-coding upstream 2372 32744868 ~ 32745219 (+)
G1686310 NA non-coding upstream 40450 32706827 ~ 32707141 (+)
G1686333 NA non-coding upstream 69135 32676395 ~ 32678456 (+)
G1686303 NA non-coding upstream 105305 32642049 ~ 32642286 (+)
G1686302 NA non-coding upstream 105889 32641488 ~ 32641702 (+)
G1686362 NA non-coding downstream 12181 32772228 ~ 32772613 (+)
G1686364 NA non-coding downstream 15333 32775380 ~ 32775589 (+)
G1686366 NA non-coding downstream 16373 32776420 ~ 32776670 (+)
G1686367 NA non-coding downstream 17028 32777075 ~ 32777281 (+)
G1686371 NA non-coding downstream 27490 32787537 ~ 32787772 (+)
G1686317 LOC106589755 other upstream 85943 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3171033 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3289670 29437357 ~ 29458499 (+)
G1681792 NA other upstream 3969182 28778006 ~ 28778409 (+)
G1681180 NA other upstream 4021096 28717361 ~ 28726495 (+)
G1687675 NA other downstream 1565790 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2621662 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2921320 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2941173 35701200 ~ 35702156 (+)

Expression


Co-expression Network