LOC110499342 (LOC106589762)


Basic Information

Item Value
gene id LOC110499342
gene name LOC106589762
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32810995 ~ 32812999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576425.2
TTGATTAGACCAGAGGCTGTTTCACCGCAATTAAATTACATCAGGAGAAGATCAAGAGAAAAGAGCAGAGGGGACAACCCAATCAATACCTGGAGAGTTGTCATTGTTGAGGGGTTCTGTATCTGCGGGCCGCACTACTTTCGAGAGTGGGTTGAGAGAATATCCTAATAAAACTTGCGTTGTGATAAAATTTGGTTTTGCGTAAATGTCATCATGGCGCTGGGCCGCCCCTCTTTCTCCATCAACGACATCCTCACCCGGGGACGTGACACACGAGACAACATTCAAATTTCACGGGATCTGACAGATCTATGCGAGTTAAAACTGGCCACCATCAACCAGGATCAGCCAACCGAGAGCAGAGATGGGACCTCGAGGGGCCCCGGTTCATCCACGTCGGACTGCAGTGAGGAGCACAAACGGGATGAGATGGAGATGATACACATCCGCCAAGGAAATATTCGTTCCTCTCCAGGTTTGGGCGACATCAGGAACCCCACTTCTGAGGCCGGTAGTGAAGAGTCCACTGGAGAAGAGACGGAATACATGTCATGCAGAAAAGACATAAACAACAAACAACTACCCAGTCTGCATCAAGAcaaacagagggaggaagaggaggaggaggagagggaaagtagTTACAGCACCGTAGGCCAACCCATATCTGGTAACAAGAAGCGCTCCCGTGCGGCCTTCTCCCACGCGCAGATCTACGAGCTAGAGCGCCGGTTTAACGTGCAGCGCTACCTTTCTGGTCCTGAACGGGCGGGCCTGGCGGGCGCCCTAAAGCTCACGGAAACCCAGGTGAAAATCTGGTTCCAGAACCGGAGATATAAGACCAAACGGCGGCAGATGGCGGCCGAACTAGCCTCCCGTAACTACTCTACACCAGCCACACTAGCTAAGAAAGTGGCGGTGAAGGTCCTGGTTCGAGACGATCAAAGACAGTACGGTGAGGATGACCTGTCCAGTCCGCCAGCTATGCCTCTCTACCCGGCCTACCAATACGGATACTACCCCTACATGTACTGCTTCCAGCCATGGCTCTCTAGCAATGCACTTTGTGGGGGCATGCATTGACACAATGGCGTAGCCAGGCCTCAAAAACATGACATTCATTAACTTTATGGATTTAGGCCTACTAGATGAAGACAAAGACACATGGTCGACATTTCTACATGCGTTTCTGTGTAAATACTTTCTTTATTCTCTCGTGGAGAGTAAGATCATTTCGACCCACAGTGAGCCTTTTTGATGCTGTAGCCCTACACCTGTAAGGACAATCCTATCGACATCCCTTAGACAACATTGAGGATACAGCTAAATGAAATACACGTCCTGAATAACGTAGACGGCCTAGATAATAATATTGAAATTATTACGCAGGAATGTATAGGCAAATAATAACTCAATAAAGTTTTAAAACAA
>TU1928979
AGTGGGTTGAGAGAATATCCTAATAAAACTTGCGTTGTGATAAAATTTGGTTTTGCGTAAATGTCATCATGGCGCTGGGCCGCCCCTCTTTCTCCATCAACGACATCCTCACCCGGGGACGTGACACACGAGACAACATTCAAATTTCACGGGATCTGACAGATCTATGCGAGTTAAAACTGGCCACCATCAACCAGGATCAGCCAACCGAGAGCAGAGATGGGACCTCGAGGGGCCCCGGTTCATCCACGTCGGACTGCAGTGAGGAGCACAAACGGGATGAGATGGAGATGATACACATCCGCCAAGGAAATATTCGTTCCTCTCCAGGTTTGGGCGACATCAGGAACCCCACTTCTGAGGCCGGTAGTGAAGAGTCCACTGGAGAAGAGACGGAATACATGTCATGCAGAAAAGACATAAACAACAAACAACTACCCAGTCTGCATCAAGAcaaacagagggaggaagaggaggaggaggagagggaaagtagTTACAGCACCGTAGGCCAACCCATATCTGGTAACAAGAAGCGCTCCCGTGCGGCCTTCTCCCACGCGCAGATCTACGA

Function

NR:

description
homeobox protein zampogna-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576425.2 False 1431 mRNA 0.49 2 32810995 32812999
TU1928979 True 574 TUCP 0.51 2 32811707 32812854

Neighbor

gene id symbol gene type direction distance location
LOC110499340 NA coding downstream 106542 32702718 ~ 32704453 (-)
LOC110499337 LOC106589758 coding downstream 122569 32676370 ~ 32688426 (-)
LOC110499335 LOC106589755 coding downstream 149289 32660221 ~ 32661706 (-)
LOC118942014 NA coding downstream 154810 32654957 ~ 32656185 (-)
LOC118942460 NA coding downstream 308687 32502129 ~ 32502308 (-)
LOC110499343 LOC106589761 coding upstream 3388 32816387 ~ 32821014 (-)
LOC110499345 LOC106589764 coding upstream 57516 32870515 ~ 32902674 (-)
LOC118942059 NA coding upstream 116006 32929005 ~ 32940772 (-)
st3gal7 LOC106589773 coding upstream 350696 33163695 ~ 33175005 (-)
morn4 LOC106589769 coding upstream 391196 33204195 ~ 33210568 (-)
G1686474 NA non-coding downstream 2462 32807511 ~ 32808533 (-)
G1686498 NA non-coding downstream 15871 32794915 ~ 32795124 (-)
G1686493 NA non-coding downstream 24632 32786161 ~ 32786363 (-)
G1686492 NA non-coding downstream 32694 32777871 ~ 32778301 (-)
G1686489 NA non-coding downstream 38446 32772344 ~ 32772549 (-)
G1686507 NA non-coding upstream 8022 32821021 ~ 32821260 (-)
G1686513 NA non-coding upstream 26391 32839390 ~ 32840147 (-)
G1686515 NA non-coding upstream 29228 32842227 ~ 32843107 (-)
G1686519 NA non-coding upstream 32856 32845855 ~ 32847331 (-)
G1686804 NA non-coding upstream 48216 32861215 ~ 32868305 (-)
G1684920 NA other downstream 1398151 31407594 ~ 31412844 (-)
G1684661 NA other downstream 1697309 31111555 ~ 31113686 (-)
LOC110499315 LOC106589727 other downstream 3264678 29541315 ~ 29571033 (-)
G1681658 NA other downstream 4275186 28535295 ~ 28535809 (-)
G1681623 NA other downstream 4336970 28473285 ~ 28474025 (-)
G1686887 NA other upstream 264811 33077810 ~ 33078027 (-)
LOC110499358 LOC106589782 other upstream 720674 33530945 ~ 33535225 (-)
G1687007 LOC106589782 other upstream 730687 33531084 ~ 33544238 (-)
G1689130 NA other upstream 2445990 35258989 ~ 35259818 (-)
G1689131 NA other upstream 2446887 35259886 ~ 35260208 (-)

Expression


Co-expression Network