LOC110499343 (LOC106589761)


Basic Information

Item Value
gene id LOC110499343
gene name LOC106589761
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32816387 ~ 32821014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576426.2
TTGTATAATGAGGACGGCTGCAACTATGTTGAGTTCATTATAGTTTCATACGGTTACTATTCCATTTATACATAATTCAATGTGGACTATATGCAAACCATGATTAAAACAGGTTTCCTACCTGTCCAGATACTGCATGAAGCGTTTCTGAGGGCTGATACCAGATTCACATTATTCTAGCCTAGATCCTACTTCTTTTTAAATGTCCAATTGAAATAACGCGATGTGTTTATTTCGGCGTAGGAATCctgtaacataataaaacattTCAATAGTTGCTACTTGATAATCTTCTCTAAACGCTAAATACAGAGAAGAGCTTGCGCCCTCGCGCCATGCAGTCACCCATCCCATTTTATCGTGACGTAACGGAGGAAAGGAGCGTCCGTCTTGGGTCCGCCAACAAAACAGAAACTGGGTCTAACCAAATCCGTCAGCTagctaaacacacacagcagCCGAGGCAGAGAGCACAGAGTAGAGAGATGAGAGCTGTCACTTCACGAAACAAGCCAGTCCTCCTTCGCATAACTCCACGAATAAAAAGCAAGGCGCAGCAATCCTTTAGGCAACTGTAGTTTTTTTTCTCAGAGACGAATAGACCCCCTTTTGGATCCGTTTACCTTCAATACCGTCTATCCAAACAAACACCTGCTTGGGGAGTTCTTTATGCTCGGATGAGCCACTTCACCAAGGGACTATAATTCCTACTTCATGTGAACGAATCGGAGCCTATGATAATAATGCTTCCTAGCCCTGTTATTTCTGCCTCCACCACGCCGTTCTCAGTCAAGGACATACTGAAGTTGGAGCTTCAGCAGAATGCTCAACAACAGCGGCTTGCCTCACACCTTGGGCCGCACCATGAGCGCTCTCACCTGGGTCCACAGCAGCACCAATACACCCTCCAGTCGCCCCCGTCTTGTATGCTGGCCGGCAGGGACAGGAACAGCCCCAGCCCCGGGCTctcggaagaagaggagagaatggCCTACCTGAGTAGTCTGACGGTTCAGGAGCGGCTGATGGAGACGGGTCTAGCCGGGGAGATATTCGTTTCAGCCGACACCAGTCTGGAGGTTGAGCAAGAGGACATAGAAGCCAAAGCTTGTGGCGCAATGGAGGTGAGGGCCTGTGAGGAGTCCCCGCAGGCGCACTCGGACTTGGAGAGACTCCCAAAACAGCAGAGGACCCGGCGGAAACCGCGCGTGCTCTTCTCCCAGGCGCAGGTGTTCGAGCTTGAGCGGCGCTTCAAGCAGCAGCGTTACCTATCCGCCCCCGAGAGGGAACACCTGGCGAACACTTTGAAACTGACCTCCACACAGGTCAAAATCTGGTTCCAGAACAGGAGGTATAAGTGTAAACGGCAGCGGCAGGACAAGACCCTAGAAATGGCCGGACACCCTCACCATCTTCCCCCACCTAGGAGAGTGGCAGTCCCGGTGCTGGTGCGGGATGGGAAGCCCTGCCTGGCTGGATCTCAGAACTATAATACATCCTACAGTGTTGGAGCGGCCAGCCCCTATAGTTATAACGGCTATCCGGCTTATTCCTACAATAATCCAGTGTATACTAACACATACTCATCATGCACGTACTCTAGCCTGCCTACTCTAGCACCCAACTCTACTGCTAACGCTTTTATGAATATGGGTCTGGCGAACCTGGGCGTGTCGCAATCTCAGGCCCAAACACCGCAGGGAACAGCCTGCCAAGGAACTCTGCAGGGCATTCGGGCCTGGTAGCTGAACGTGATGATCTGCTTGTTGATTAACAGTTGATCACGTCGATCACTAGCCTACAGTGTTTTGGGGATAAGGGAAAACCTGTCTGTGTCCCATGCAGCAAAATAGAAGGATTTCTAATTGAAAACCGTCACATTGAGACTCGATCATCTTGTACTAATATATTAGCTGTTTCCTCATCAACGcggcaaaaacatgtttttttaaagttgTTGGACTATTCCAGAGTCACTGTTGGATATAGATATATACTATGGCAACATTGCAGACGGACTAAAACGCGTACGCAACCGTGCGTAATATGGCCTTAAAGCTGTTGGGTGCTTGTGAACCAAGGATGTGAATGGCAAACATTGGCAATGGTTATATCTGAGCTATTTACATCAGAAATATGACTTTACCAGTAGCCTACTTTACCAGTGAAAACAGTATTCTTCAACAACATAACAGAAACTACTTAAATAAAAGACCGAACATGTGGAAGGATTATTTGTTGTTATTTCGAATTGACCATTTGCTGCTGCCTTTTTAGTCACTTATTTGAGTGATTCTGCACTTAAACAATGCCCGCTGCGGTTTTTAGAAAATAAGCATATATTGACAAATAAAGTGAAACATTTGGGTATCAAAAATCAGACGTGTTGATAATATTTTCTGAGGGAAAATAACATTGCCGTATCCTTACACTCTCCATCGCAGTTTCGAAAAGAGTTTATAATCCGGCTGATATATACTGTAACTGAAAGAGGGCGTTGGTACAGTTCAGTGTCCTATGTTGCTTTGTTTATCTATAGGACCGCCAAATTCCATTACCACGAGGGGCATAAACGTTCTCTTGGGAACTTGCTAAGGGAAACACAATACACttgcaattgtgtgtgtgtgtgcgcgcgtgtgcgtgtgtgtgtgggagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagaaagaaagaaagaaagaaaaaagaaagaaagaaaggaagagaaagaaacCTTGCAAATGCCTTATGACATTTGTTACTGGCTGGTTTTGAGTTGATAAAGAAATGAATAGCCGCGTTCTTTCAATCTCATTTGTAAAAGGTGAGCTGTGTTTGTAGTAGGCCCACACATACATATGTGCGCACTAATTTCGGATATATGTATACAGTTATTTAAATGCTTTGGTTGACGGTGGTTGAAGGGGTAGGCTTATTTCGTGATATGTTCTTCTTATCGGCCTTTGAGAAGCGCGCTTTGGGTTTTTAGAGGTATTCGAGAAGGGGCGTTTGGTCTCTGGTTTGCTTTAGACAAATTCAGGCCGTCAATTAGGCCTATGCTGATTATTTGTAATCTAAAGATACAATTCAACTTTGGAAACATTTAATATTACACGATTAAAGCAAAAATAATTAAGCCTATTTTATTTCCCCCCAAAATGCTAATTATTCTCTACTGAGCATATGTTAAAGTCCTGCAAAAAAGATATGGCTCTGCCAGCATACTGATCGCCATTGAAGGCCGTTTTCCAGCCCTCGCTGTGTGAGAGTTGAGGGGAGAGTCAGATAGAGGGGAGAGTCAGATAGAGGGGAGAGTCAGATAGAAGAGCAGGCCAGGAATACAAACAGAAACAGACAAGAGCCAGAACTCAGACATACATAATGGAGAATGGAGAATTTCGGCCAGAGACGGACATTATCCAGACAACGCGCTACAACAGTTTGATCGCGCATCCACGGAGGGCGTGGGGCCCACACGGATACTGCTAAGTCT

Function

NR:

description
homeobox protein Nkx-2.5-like isoform X1

GO: NA

KEGG:

id description
K09352 NKXN; homeobox protein Nkx, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576426.2 True 3505 mRNA 0.45 2 32816387 32821014

Neighbor

gene id symbol gene type direction distance location
LOC110499342 LOC106589762 coding downstream 3388 32810995 ~ 32812999 (-)
LOC110499340 NA coding downstream 111934 32702718 ~ 32704453 (-)
LOC110499337 LOC106589758 coding downstream 127961 32676370 ~ 32688426 (-)
LOC110499335 LOC106589755 coding downstream 154681 32660221 ~ 32661706 (-)
LOC118942014 NA coding downstream 160202 32654957 ~ 32656185 (-)
LOC110499345 LOC106589764 coding upstream 49501 32870515 ~ 32902674 (-)
LOC118942059 NA coding upstream 107991 32929005 ~ 32940772 (-)
st3gal7 LOC106589773 coding upstream 342681 33163695 ~ 33175005 (-)
morn4 LOC106589769 coding upstream 383181 33204195 ~ 33210568 (-)
LOC110499533 slit1 coding upstream 471261 33292275 ~ 33472601 (-)
G1686474 NA non-coding downstream 7854 32807511 ~ 32808533 (-)
G1686498 NA non-coding downstream 21263 32794915 ~ 32795124 (-)
G1686493 NA non-coding downstream 30024 32786161 ~ 32786363 (-)
G1686492 NA non-coding downstream 38086 32777871 ~ 32778301 (-)
G1686489 NA non-coding downstream 43838 32772344 ~ 32772549 (-)
G1686507 NA non-coding upstream 7 32821021 ~ 32821260 (-)
G1686513 NA non-coding upstream 18376 32839390 ~ 32840147 (-)
G1686515 NA non-coding upstream 21213 32842227 ~ 32843107 (-)
G1686519 NA non-coding upstream 24841 32845855 ~ 32847331 (-)
G1686804 NA non-coding upstream 40201 32861215 ~ 32868305 (-)
G1684920 NA other downstream 1403543 31407594 ~ 31412844 (-)
G1684661 NA other downstream 1702701 31111555 ~ 31113686 (-)
LOC110499315 LOC106589727 other downstream 3270070 29541315 ~ 29571033 (-)
G1681658 NA other downstream 4280578 28535295 ~ 28535809 (-)
G1686887 NA other upstream 256796 33077810 ~ 33078027 (-)
LOC110499358 LOC106589782 other upstream 712659 33530945 ~ 33535225 (-)
G1687007 LOC106589782 other upstream 722672 33531084 ~ 33544238 (-)
G1689130 NA other upstream 2437975 35258989 ~ 35259818 (-)
G1689131 NA other upstream 2438872 35259886 ~ 35260208 (-)

Expression


Co-expression Network