LOC110499344 (LOC106589763)


Basic Information

Item Value
gene id LOC110499344
gene name LOC106589763
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32849697 ~ 32863389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576428.2
TTTGAAGGAAAAAACCAAAACATCGTTAAACCCGTttattcatattcatattcagCGACCGATATTTGCATATGAACGTGTCAATCTCCAATAATGTTTAGTCATTGGCACAAACTGTCAACCACGTCACATTATTTCCCCCTTTTCAATCGTCACTAAAattggcagattttttttatcTGCTGGTTGCTTTCAATTTCTATTGGTCAAATCTCTCACACCCATTTTCCACTGACCAAATCCATCCAAGTTGAAGGTGAAATTATTTTCCTACTTCGTCCATTAGACTGAACAGCGGTTTGTCCTCTGTTGTTTTTCCGTTTTAGCTAACAATTCCGCCTCGGTAATATTCATCATCATGTCATTGTTCGGTGAGGTTCCCCAAGCCACTCCAGTAGCGGTCTTCAAACTGTCGAATGATTTCAAAGAGGACCCGAACCCAATGAAGGTGAACCTCGGTGTTGGAGcCTACAGGACAGATGAGGGCCAACCCTGGGTGCTGCCTGTGGTTAAGAAAGTGGAGAAGCTCATCGTAGCAGACAACCGTCTGAACCATGAGTACCTCCCCATCCTGGGTCTGCCTGAGTTTAGGTCCTCTGCATCCAAGATCGCCCTGGGAGAAGACAGCCCTGCCATCCAGGAGAGCAGGgtggGAGCGGTGCAATGTCTGGGGGGTACAGGTGCTCTGAAGATGGGGGCTGAGTTTCTCAGACGCTGGTACAACGGGAACGACAACATGAAAACACCTGTCTACGTCTCAGCGCCAACCTGGGAAAACCACAACTCTGTGTTTGCCAACGCTGGGTTCAAGGACGTCCGTCCCTATAAGTACTGGGACGCAGAGAAGCGGGGACTGGATCTGGACGGTTTCCTAGGTGACCTGGAGACTGCACCAAAGCATTCCATCTTCGTTTTGCACGCTTGTGCCCACAACCCCACCGGCACAGACCCTACACACGTGGAGTGGATGCAGGTGGCTGAGGTCATGAAGagGAGGAAGCTGTTTGTGTTCTTTGACTCTGCATACCAGGGCTTTGCATCAGGCTGTCTGGATAAGGATGCATGGGCAGTGCGCAACTTTGTCACCCAGGGCTTTGAGATGTTCTGTGCCCAGTCCTTCTCCAAGAACTTTGGCCTttacaACGAACGTGTGGGGAACCTGACCATCGTAGCTCGTGATGCTGACAACGTGAGGAGGGTTCTGTCTCAGATGGAGAAGATTGTCAGGGTAACCTGGTCCAACCCTCCCTCCCAGGGTGCCAGGCTAGTCGCCATCACACTCAACAGAGCTGAACTCTTCGCTGAATGGAAGGATAATGTGAAGACCATGGCAGACCGTGTGTTGTTAATGAGGGCTTCACTCCAGGCTAAACTACAGGCTCTGGGAACACCAGGAACATGGGACCACATCACACAGCAGATCGGCATGTTCAGCTTCACTGGCCTCAaccCTAAACAAGTGGAGTACATGATCAAGGAGAGGAGTATCTACCTAATGGCCAGCGGTCGTATCAACATGTGTGGTCTGACCACTAAGAACATCGACTATGTGGCCAAGTCTATCCACGAGACTGTTGTCAACGTCCAGTAGAAGACAACAATACCATTAGCACTGGCCCCTGTCCACCACCAgcagtgtgtgtataatgtattaGACCAAGGGGGAGCCAGGTACGGGCCACATCCGGCCTGCAAGAcattgaaaaaataaatatatatatttttttataaatctttttttcccccccaatttcatggtatccaattggtagttatagtcttgtcccatcgctgcaacttccgtacggactcgggagaggcgaaggtcgagagccgtgcatcctccgaaacatgacccgacCGAGCCAACCGACCATGACCCGACCGActcagaagccagctgcaccaatgtgtctgaaGAAACACTGAACACCTGGCGACAGTGTCAGTGcgcatgcgcctggcccgccaaaCGAgccgctagagcgcgatgggacaaggaaatctcgggcctgccaaaccctctcctaacccggacgacgctgggccaatgcctcatgggtctcccagtcactgccagctgtgacacagcctgggatcgaacccaggtctgtagtggcgcctcaggcactgtgatgcagtgccttagaccgctgcatcacTCGGGAGGCCCCCGCAAATTAATTTAACAAACAATTGGTCCCCCCAAAAATGCGGCTCTCTGTTGAATTTCAAAATCCCAATTTGTCACTCGAGACAGTTTGCCCACCCCTGTGTTAGACCAAACACACAGAAGCCTCCTTCCTAACTCCCAGCGCCTGTCTACAGATTAATTCTATTTTTACCCTTAAACTAATGCACAAGGCAGCGTAACAGTTAAAGACAAGTCTTAATCATTTGTCTGTGtggctctgtgtgtttgtcaTCCCTGTGTGTTTGTCATCCCTGTGTGTTTTCATCAATAATCAAGAACGATCCGGTTAGGATGATTCCATTCCTATTGTGAAATGCACATTCCTTATTCCGTTTGACTTACCACCTGAATACGTTTTATAGGAGGAGTTGTTTGGGTCCACTTGAGAGCGAATGTCGCAAAATATTAACTGTGACCCAAGTAAACAGTATTTGACTTGGAAAAAGTACTAGAGTGAAACAATCAATTGACCAAATCAGTCACGCACTAAATATATGTAGGACGTTACATTTACAATCATGTTTATTTTAGTGCAACGGGACTTGAAGTAAAAATCCTGTATTACCTCAGACCTTAGCTGTATGGAGCGCTCTGTTGGGGAAGCTGTTCTCAAAGTCCCGGGGTGCGTTCAGTAGGGACAAATAGGAATGTTCTCAGTCCCGGGGTGCGTTCAGTAGGGACAAATAGGACTGTTCTCAAAGTCCCGGGGTGCGTTCAGTAGGGACAAATAGGACTGTTCTCAAAGTCCCGGGGTGAGTTCAATAGGGACAAATAGGACTGTTCTCAAAGTCCCGGGGTGCGTTCAGTAGGGACAAATAGGACTGTTCTCAAAGTCCCGGGGTGCGTTCAGTAGGGACAAATAGGACTGTTCTCAAAGTCCCGGGGTGCGTTCAGTAGGGACAAATAGGAATGTTCTCAGTCCCGGGGTGCGTTCAGTAGGGACAAATAGGACTGTTCTCAAAGTCCCGGGGTGCGTTCAGTAGGGACAAATAGGACTGTTCTCAAAGTCCCGGGGTGCGTTCAATAGGGACAAATAGGACTGTTCTCAAAGTCCCGTGGTGCGTTCAGTAGGGACAAATAGGACTGTTCTCAAAGTCCCGGGGTGCGTTCAGTAGGGACAAATAGGACTGTTCTCAAAGTCCTGTGGTGCGTTCAGTAGGGACAAATAGGACTGTTCTCAATCAGAGCTAAAATCCtgtttttctttttgttttcAGCATTTTAATTAAGGGTCTGCTCAATGTGGATGTCCAATCAGTCTGTTCtgatgctgtctctgtctgtagcaTTATTATTGCACTATTATCAGTAGCTACCATCTCAATGATATACATGTAATGTTCAAAATTGCAGAAATGAAATGCGCTCACAGCTAGTGTCTGTAAGTGAATACCTATGTATCTCAAGGGGACTGAAGCCTTGAATAAACGTCTACACACCACCAT

Function

NR:

description
aspartate aminotransferase, cytoplasmic-like

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0004069 L-aspartate molecular_function

KEGG:

id description
K14454 GOT1; aspartate aminotransferase, cytoplasmic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576428.2 True 3639 mRNA 0.48 9 32849697 32863389

Neighbor

gene id symbol gene type direction distance location
LOC110499341 LOC106589760 coding upstream 89650 32747591 ~ 32760047 (+)
LOC110499338 LOC106589757 coding upstream 112967 32702791 ~ 32736730 (+)
LOC110499339 LOC106589759 coding upstream 147172 32690087 ~ 32702525 (+)
LOC110499531 NA coding upstream 235764 32612958 ~ 32613933 (+)
LOC110499334 LOC106589753 coding upstream 373532 32291265 ~ 32476165 (+)
LOC110499532 hpse2 coding downstream 199646 33063035 ~ 33132825 (+)
LOC118942060 LOC106589768 coding downstream 321675 33177293 ~ 33196167 (+)
LOC110499352 LOC106589767 coding downstream 352883 33216272 ~ 33262134 (+)
LOC110499354 NA coding downstream 611551 33474940 ~ 33517443 (+)
LOC118942063 NA coding downstream 665409 33528620 ~ 33530380 (+)
G1686518 NA non-coding upstream 2322 32847027 ~ 32847375 (+)
G1686386 NA non-coding upstream 8759 32840300 ~ 32840938 (+)
G1686402 NA non-coding upstream 10657 32838574 ~ 32839040 (+)
G1686395 NA non-coding upstream 21129 32828145 ~ 32828568 (+)
G1686391 NA non-coding upstream 28392 32821032 ~ 32821305 (+)
G1686524 NA non-coding downstream 1503 32864892 ~ 32868963 (+)
G1686563 NA non-coding downstream 90900 32954289 ~ 33058087 (+)
G1686566 NA non-coding downstream 97470 32960859 ~ 32965536 (+)
G1686571 NA non-coding downstream 98393 32961782 ~ 32962946 (+)
G1686567 NA non-coding downstream 118678 32982067 ~ 32993118 (+)
G1686317 LOC106589755 other upstream 188049 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3273139 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3391776 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4071288 28778006 ~ 28778409 (+)
G1681180 NA other upstream 4123202 28717361 ~ 28726495 (+)
G1687675 NA other downstream 1462448 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2518320 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2817978 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2837831 35701200 ~ 35702156 (+)

Expression


Co-expression Network