LOC110499532 (hpse2)


Basic Information

Item Value
gene id LOC110499532
gene name hpse2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33063035 ~ 33132825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956206.1
TTGAATATTTTGAGAAGAAACAAAGTTACAACTGCGTCTGGTTTGCTCCCAGCCAGGTCTCTAGACAAACTGTACAACTTTGCCGAGTGTGCTGGTCTGCATCTGGTCCTGGGGTTCAACGCCCTGCAGAGAAATCCTGACTCCTCCTGGAACTCCTCCTCAGCCTTCAGCTTACTCAAATACAGCGCCGGGAAGAAATACAACATCTCCTGGGAACTGGGCAACGagcCTAATGGCTACCGAAGCATGGTGGGTCAGACCGTTAACAGTACCCAGCTAGCCAAGGACTACACCATGCTGAGAACACTACTGCAATCTGTACGCTACTACAGCCGAGCACACCTCTACGGCCCTAACACTGGGCCACCACGCAAGAACGCCATTCTGCTGCTCGACGGGTTCATGAAGAACGCTGGTTCTGTTGTGGACGCTGTAACGTGGCAACATTACTACACGGATAGCAGAGTGACCAAAGTAGAGGACTTTCTGAAGACTCGCCTGCTGGACACCCTGACCGAACAGATCACTAAAGTACTCAAGgtAGTGAATAGCCATGCTCCTGGTAAGAAGGTGTGGTTGGGTGGAGTGGGTCCGGCGTGGGCTGGAGGAACCAACAACCTCTCTGATACCTACGCTGCTGGCTTTCTgtggcTGAACACTCTGGGTATGGCAGCGATGCATGGGATTGACGTGGTCCTGAGATACTCGTTCTTCGACTATGGATACACACACCTCGTAGACCAGCACTTCAACCCACTGCCGgactATTGGTTCTCACTGGTGTTCAAGCGTCTGGTGGGCCCCAGGGTGTTGGCGGTGCGGGTAGCAGGCTTACAGAGGAAACCACAGCCAGGGAGGGTCATCCGAGACAAACTACGCATTTACGCCCATTGTACCAGCTTCCACAATCATAACTACGTGAAAGGGTCCATAACGATCTATATCATCAACCTGCATCGGTCCAGGAAGAAAATCAAGCTGGCGGGAACCTTACGTAACAAGACTGTCCATCAGTACCTGCTGCAGCCCTACGGGGCAGACGGACTACACGCCAGGTCAGTCCAGTTGAACGGAGAAAGGTTGTTGATGGTGGACAACGAGACGTTCCCGGAATTGAAGCCTCAGACGCTGCGGGCAGGGAGGACGATAGCCATGCCCCCTATGACCATCGGCTTCTATGTCATCAAGAACATCAACGCTTATGCCTGCCGCAGATAATCCTCAGCATACTCCTCCTCACCCTTTACCCCTTACCCTTCACCTCCACACTCCTtacccctcaccctcacccttcaCCCCCACACTCCTTACCACTCACCACTCACCCCTCACCCACACACTCCTtacccctcaccctcacccttcaCCCCCATACTCCTCACCACTCACCCTTCAGCCTTCACCCCAACTCCTTACCACTCACCCCTCACCCCCACACTCCTtacccctcaccctcacccttcaCCCTCATACTCCTCACCACTCACCCTTCAGCCCTCACCCCAACTCCTTACCACTCATCCCTCATCCCCACACTCCTTACCACTCACCACTCACCCCTCACCCCCACACTCCTTACCACTCACCCCTCACCCTTCAGCCCTCACTCCAACTCCTTACCAATCACCCCTCACCCTTCACCCCCAACTCCTTACCACTCACCCCTCACCCCCACACTCCTTACCCTCACCCTTCACCATTTACCTCCACACTCCTCACCTTTTCCCCCCTACACTCCTCACCTCACACCCTAGCCATCACCCCTTACCCCCTCCTTCTCACCCCTCATTCTTTTGGTTCTTTATCACTAGTCCCTAGTCCCTGGTCTGACTCAGAAAGGCTTGCCCTTTGTCCCAGACAAGGGTTGCACTGAATACCTTTCAATAGCTCTTTACACCGTCTCCCCATGTGCTACAAGACGGACAGGGATGATTCTACTATTGGGATTTTGTATCGTTTTGTAAAAAGGTTATTGAGTTTTGTTATGACAGAACTGCTATTTCAGAAGGTTGTATCATCCTCCATTTCCAACTAGAATTGTTTTCCATGTCTTTGATCATCAGATCCACTAACAGACACTCCGATTTCTATCTGCCAACAACTCTTATTGTTTCCCCTGCAAACTCCTCTCAACTCTTTGTTGTTGATACTCTGAAGCTCCTGGCagacggagagacagaaagaagagaaAACCTGAAGAAAACAAAACCAGTCAACCCCAGGACGTGTGTCAGCCCCAGCAGCCATGTCTGCTGTCTGACTGAATCATCactgggtgtggtgtggtgtgatatggtgtggtgtggtgaggtatggtgtggtatggtgtggtagggtgaggtatggtgtggtatggtgtggtgtggt

Function

symbol description
hpse2 Predicted to enable hydrolase activity, acting on glycosyl bonds. Predicted to be located in membrane. Predicted to be active in extracellular matrix. Is expressed in liver. Human ortholog(s) of this gene implicated in urofacial syndrome. Orthologous to human HPSE2 (heparanase 2 (inactive)).

NR:

description
PREDICTED: inactive heparanase-2 isoform X1

GO: NA

KEGG:

id description
K07964 HPSE; heparanase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956206.1 True 2367 mRNA 0.52 9 33063035 33132825

Neighbor

gene id symbol gene type direction distance location
LOC110499344 LOC106589763 coding upstream 199646 32849697 ~ 32863389 (+)
LOC110499341 LOC106589760 coding upstream 302988 32747591 ~ 32760047 (+)
LOC110499338 LOC106589757 coding upstream 326305 32702791 ~ 32736730 (+)
LOC110499339 LOC106589759 coding upstream 360510 32690087 ~ 32702525 (+)
LOC110499531 NA coding upstream 449102 32612958 ~ 32613933 (+)
LOC118942060 LOC106589768 coding downstream 52239 33177293 ~ 33196167 (+)
LOC110499352 LOC106589767 coding downstream 83447 33216272 ~ 33262134 (+)
LOC110499354 NA coding downstream 342115 33474940 ~ 33517443 (+)
LOC118942063 NA coding downstream 395973 33528620 ~ 33530380 (+)
LOC110499362 LOC106589783 coding downstream 528496 33661321 ~ 33787514 (+)
G1686563 NA non-coding upstream 4948 32954289 ~ 33058087 (+)
G1686579 NA non-coding upstream 46823 33009409 ~ 33016212 (+)
G1686567 NA non-coding upstream 69917 32982067 ~ 32993118 (+)
G1686566 NA non-coding upstream 97499 32960859 ~ 32965536 (+)
G1686571 NA non-coding upstream 100089 32961782 ~ 32962946 (+)
G1686547 NA non-coding downstream 562 33133387 ~ 33133853 (+)
G1686549 NA non-coding downstream 1086 33133911 ~ 33134197 (+)
G1686630 NA non-coding downstream 12175 33145000 ~ 33145201 (+)
G1686631 NA non-coding downstream 13654 33146479 ~ 33146716 (+)
G1686632 NA non-coding downstream 13913 33146738 ~ 33147091 (+)
G1686317 LOC106589755 other upstream 401387 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3486477 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3605114 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4284626 28778006 ~ 28778409 (+)
G1681180 NA other upstream 4336540 28717361 ~ 28726495 (+)
G1687675 NA other downstream 1193012 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2248884 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2548542 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2568395 35701200 ~ 35702156 (+)

Expression


Co-expression Network