LOC118942060 (LOC106589768)


Basic Information

Item Value
gene id LOC118942060
gene name LOC106589768
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33177293 ~ 33196167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037982.1
tccggttactagtccaacgctctaaccactaggctaccctgccgccccagcgaTCTGCAATGGCCCTACTGTAGCAATAgcacaaaatatttttttgaaaactCAATTGTACCTTTTACCTGAGACAGATATCATTTTAACAGTTCAACATCTTACATAACTAAATATTTTTCCAGTTAAGGAGGACAGCACTGCACTTTGCCTCCATCGAGGGACACTCTACCGTCATCCAGAAGCTTCTAGAGAAAGGAGCTAACATCAATTCTAAAGACCGGCTGGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGaggcgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGcTGATGGCCAGCCCTCTCCATGTGGCCACCAGGACAGGCCATTCTGATGTAGTGGGACACCTGCTGAACAGTGGAGCCAAAATCAACGCCAGAGACAGGGAGGGGGACACTCCTCTGCATGATGCTGTGCGTCTGGGCAGATATAAGATACTCAAGCTGCTCATTGTTGGAGGGGCTGATACAAGGCTCAAAAACCATgaggGCTTTACAGCAGTGGAGCAGGTGAAAGAGTGGCAGTTTGACACCAAGGAGACTCTGGAGAAACTGGACCAGCTGAGGGAGGTGGGTCTGGTACCCCCACTGTTACCTAACTTACCAGACCACCAAATCTGCCTTCAGCCCTAAACCTACACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCTTCATCGCGAAACCTCTACATCCCACTGCTACATACCTAACCAGAGTCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCAATGGTACCTAACTTACCAGACCACCAAATCAGCCTTCAGTCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCTTCAGTCCTAAACCTCCACATCCCACTCTTACCTAACTTACCAGACCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGTTACCTAACTTACCAGACCACCAAATCAGCCTTCAGCTCTAAACCTCCTATCCCACTGGTACATACCTAACCAGATCACCAAATCTGCCTTCAGCCCTAAACATCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGATCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACAACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCTCCACATCCCACTGGTACATACGTAACCAGATCACCAAATCAGCTTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTACACCTCCACATCCCACTGGTACATACCTAACCAGATCACCAAATCAGCCTTCAGCCCTAAACCTCCTATCCCACATCCCACTGGTACATACCTAACCAGACCACCAAATTAGCCCTAAACCGCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCCCCACATCCCACTGGTACATACCTAACCAGACCACCAAATTAGCCCTAAACCGCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCCCCACATCCCACTGGTACATACCTAACCAGACCACCAAATTAGCCCTAAACCGCCACATCCCACTGGTACATACCTAACCAGACCACCAATCAGCCCTAAACCTCCTATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACTACCAAATCAGCCCTAAACCTCCTATCCCACTGGTACATACCTTACCAGACACCACCATTTCAGCCCCTGACTGGGTGCATAGGGCTTAACTTCAACTCCCATCCTGGACAGGCACAGCGTGTGCAGGCTTTTGAGTCCTCTTAGAAAAAATAGTGCTATCTTGAACCTAAaaaggttatttggctgtccccatatcctatttggttccaggtagaaccctttccacagagggctgtacatggaacccaaaagattTCAATCTGGAACCAAAAACGGTTCTCCAATGGGGACATTTTGTAACCCTTTTTTCTACAagtgtaaatcaaaactagacgatGAAGTGAggtttgtgcccagtgggctaCTGCATATTTGATCAAGTCATTTCAATGCAGACCTACAGTCATGGCAAACTCTCATCATCTTGTTTTCTGGTTATATTTGATGTAACAGGATCGTACTGTTACAGTAGTGGCCTGATAATATATGCTCTACTCTCCTAGTGTGTGTCTGCATGGCTCTCAGGAACATAAACCAAGCACTTTTACTTGTTATAAGCACGTTTACTGTATTTGTTATATATTTCCTGCATACTCACACCCCTCATGTACATGGTATTTGATTCATGTGTTATCTGCAGTGTGTCCTTCTAGGACACAACAGGCTGAAGTTCAAAGATTAGTTCTGTGTGCCGTTATACCGGTGAGGTTGAGACTGCTGCTTTCATGTCATCTGCTTTTgctgaaaatacatttttagaaaagTCCTTTCAGCTGAGCAGTGTGGTGCTGGTGACTGGACTTATTAAAGCAACTCATTGGCGATTCTCTTCTGAAGAGCTTTAAAACCCCTGAAAAGCTGTGTTCTTGCATTAGAATCATTAGACGTTGAAGTCTGTGCCTAGTGGGGACACTATCTTGCCATGTAGGCTTGTCACCATATATTCAATATAAATTGCAGATAATCCATATGAGAATCCAAGATTCCCAGTACATTCACTGCTGGCGTTGCTCTCCAACATTACACCATCCATGGTGATATTAAATCAACAAATGATTTACTAATGTATGTCGAAGTGCATTTTTGTTCTTGTTGTTAAAAGTCTTTAAGAGCAGTACTTTGTGAGCAGATTTAAAATACGACCAATGCAGTAGGCCCATGTGTTGATTGCATCACCATAGCTTTATATCAGCATTAGGTTCTGATTTGAAACTGCATTTGGTTTATCCTCCACCATTATTACAGTAATTAACAAATGACTGTCCATCAGCAGTTGTTCCACGTTTAAAGGTCACTGGAAAACTGTTCATTTTACAGAGGCTAGAGTCACAGACAATGTTTAGTTAAAACTGGCTCTATTGTCTCTGTGGTGCCCCGGGGGTGGATGGGATGGTTGGGGTGGCTGTTTTTCCTTTGTTAAACACCTCGGATTGGGTTAGAAATGTGTGGACATACTTCCGTGGGTCCAGTGGAAATATTTTCCtgttgtcatcataggtacagtcCTGCCTGAGGGGAAATGATCTCTGGCTCAGGGATAAACCTGTCAGAATGTATTTTGGTTTGACTACACATGTACACTGTATCGCTGAATATATCGCTGAATAGTGGAAGGACTTAAAGCAGTAGTAACAATAGTATAAGCCCTGTGAATGTGAGTTCACTGTACCTATGCCAAGAGGTCTGGATAACTGTGGGGTTGCTGGTTCAAGCCCCACTCCATAGGTTCTCCATAAATCACTACAATGGTATTGATTTGAGTGCAATGTCTAAAAAGCACCTGAAAGATAAAGCTATTAATATTAGTAGCAATCCTCACTTTACAGAACATGttcctgcctagttaaataaaggtaaacaaaaataaataaaaaatatataaaactggtTCAACTTTGACTTCTGAGTCATCGGGGGACATTGTTGCCATAGTGACAGTATGTTGTGTATTGTACAGAAAAGGTGCATCCAAGCGTGTTGGTTTTGAACAGAGAATGTATGTGTATGCCAATGTTATTTATATTAGCTTAGAAAACCTATAATCAACTGCATATTTCTGTATATAATTTACCATGTAGTGTCCTGCTGACATCCACACATAAAGCTCATTCCAAATCAAATAAACAGCAGATTTCAGTAGGATATCCAGTAAGCCTCCCTTTGTCGTAGTGGGATCTcgatgttacctcctctccttggtagagcaacatgctcaatgcctgtgtatttgagggaggagataggatggttagcttcaacaaagtgagctgctactggatAGTCAATGTTCGTATCGTATACCTGATTGAGTTGCGGTGTTCAGCTATGTgttgttttaattgtattttcGTTTGTCCTACGTAGGCTTTTCCACATGAACAGGTGATGAGATAGATTACTCCCTTGGTCTTGCATGAGATGATACCCCTAACAGGGATTTTTCAACCTGTATAGTTCTCAATCAGTAAACATCAACTTTACAAAACCCACACTAAAACTATGACACTTGATACTACATATCCACAGTTGTTTCCTGTCGCCTTCTCTTCTCACATCTGCTCTGACATGAAAGAACAGCATTGGCACAGATCAAAACTATTTCCAATTAGGTCTCCACCATATTTCTCTCTTCTACACTGTATTTACAGTTAGTGAAAtttgagaggagaagagaccactatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCACTATAGACTATTGAGATGTAGGAGAGGAAACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCACTATAGACTATTGAGATGTAGGAGAGGAAACCActatagactattgagatgcaggagAGGAGACCACTATAGACTATTGAAATTCAGGAGAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcagggGAGGAGACCACTATAGACTATTGAAATTCAGGAGAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcagaaGAGGAGACCACTATAGACTATTGAAATTCAGGAGAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggaCAGGAGACCACTATAGACTATTgaaatgaaggagaggagaccactatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagA
>TU1929194
GTTTTGTTTCCATTTCAACCCTGAACGGACATCCCAGTATGGAGGAGGATGTGCAGTGGGCTACCAATGTGACAGCAGAACAGGACCTCAAGAAGTCTGAGccagaggagagagagaggaattcaTTTTCAGAGGGGAAGATAGTTGATCAGGGAGGACCAGAGAGCATAAAGGAGATCTGCCGGAGGAGGAAGTTGAAGAAGTCAGGGTCCTCATCCAAGGTGGCCATGGACATACCCGTGTTAGGACCTGTAGACACTTTTGACTTCATGAAGGCAGCGACTCAGGGTAAACTCAAAGTGGTGGAGAAATACCTGGAAGATGGAGGAGACCCCAATTTCAGTGATGAGTTAAGGAGGACAGCACTGCACTTTGCCTCCATCGAGG

Function

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037982.1 False 6290 mRNA 0.46 5 33185064 33196167
TU1929194 True 387 TUCP 0.50 4 33177293 33185276

Neighbor

gene id symbol gene type direction distance location
LOC110499532 hpse2 coding upstream 52239 33063035 ~ 33132825 (+)
LOC110499344 LOC106589763 coding upstream 321675 32849697 ~ 32863389 (+)
LOC110499341 LOC106589760 coding upstream 425017 32747591 ~ 32760047 (+)
LOC110499338 LOC106589757 coding upstream 448334 32702791 ~ 32736730 (+)
LOC110499339 LOC106589759 coding upstream 482539 32690087 ~ 32702525 (+)
LOC110499352 LOC106589767 coding downstream 20105 33216272 ~ 33262134 (+)
LOC110499354 NA coding downstream 278773 33474940 ~ 33517443 (+)
LOC118942063 NA coding downstream 332631 33528620 ~ 33530380 (+)
LOC110499362 LOC106589783 coding downstream 465154 33661321 ~ 33787514 (+)
rab23 LOC106589799 coding downstream 753585 33949752 ~ 33958728 (+)
G1686640 NA non-coding upstream 10051 33174042 ~ 33175013 (+)
G1686636 NA non-coding upstream 16035 33167196 ~ 33169029 (+)
G1686632 NA non-coding upstream 37973 33146738 ~ 33147091 (+)
G1686631 NA non-coding upstream 38348 33146479 ~ 33146716 (+)
G1686630 NA non-coding upstream 39863 33145000 ~ 33145201 (+)
G1686659 NA non-coding downstream 8121 33204288 ~ 33205058 (+)
G1686658 NA non-coding downstream 71651 33267818 ~ 33268441 (+)
G1686699 NA non-coding downstream 120851 33317018 ~ 33317263 (+)
G1686700 NA non-coding downstream 123628 33319795 ~ 33320009 (+)
G1686317 LOC106589755 other upstream 523416 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3608506 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 3727143 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4406655 28778006 ~ 28778409 (+)
G1681180 NA other upstream 4458569 28717361 ~ 28726495 (+)
G1687675 NA other downstream 1129670 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 2185542 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2485200 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2505053 35701200 ~ 35702156 (+)
G1689671 NA other downstream 2685411 35881578 ~ 35881874 (+)

Expression


Co-expression Network