LOC110499354


Basic Information

Item Value
gene id LOC110499354
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33474940 ~ 33517443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037985.1
ATCGATATTGTAACACAGATTGCATTAAAAGACAATTGTAACATTATCAAAACTAAGAACATAAAAATGAATAATACATAAAATATTGAATAAAACATGAGTCGATGCAAataacagaataaaacaatgtGATCACTAAGACACATAGTAGTTGTACTCTGATGAAGTAAAACACAAAGAAAAGTCTTCAAGTGTAAAACGTAGTTTAATTAGAGAGAAAATCAGTGTTGTAAATAAAGACTTTGTCTACAGAAACAAAATCCTAATAAACAGTGAGTTCACCAGTAGTAATAACACTATACCTTCAGATACTCCTAGACCTTGGACCTCTCACTCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACATGTGACCCAACCACACCTTGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTTCTTAACTGGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTTCTTAACTGGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACAC
>XR_005037986.1
ATCGATATTGTAACACAGATTGCATTAAAAGACAATTGTAACATTATCAAAACTAAGAACATAAAAATGAATAATACATAAAATATTGAATAAAACATGAGTCGATGCAAataacagaataaaacaatgtGATCACTAAGACACATAGTAGTTGTACTCTGATGAAGTAAAACACAAAGAAAAGTCTTCAAGTGTAAAACGTAGTTTAATTAGAGAGAAAATCAGTGTTGTAAATAAAGACTTTGTCTACAGAAACAAAATCCTAATAAACAGTGAGTTCACCAGTAGTAATAACACTATACCTTCAGATACTCCTAGACCTTGGACCTCTCACTCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTTCTTAACTGGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTTCTTAACTGGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACAC
>XR_005037984.1
GCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTTCTTAACTGGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTTCTTAACTGGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACATCTAGGGCCCAGAGGTTTTTCTTAACTGGTGAACCAACCACATCTAGGGCCCAGAGGTTTTCCTTAACCCAGCCACATTTAGGGTCCAGAGGTTTTCCTTAACATGTGAACCAACCACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037985.1 False 816 mRNA 0.41 5 33474940 33517443
XR_005037986.1 False 774 mRNA 0.40 5 33474940 33517443
XR_005037984.1 True 406 mRNA 0.48 4 33475308 33517443
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110499352 LOC106589767 coding upstream 212806 33216272 ~ 33262134 (+)
LOC118942060 LOC106589768 coding upstream 278773 33177293 ~ 33196167 (+)
LOC110499532 hpse2 coding upstream 342115 33063035 ~ 33132825 (+)
LOC110499344 LOC106589763 coding upstream 611551 32849697 ~ 32863389 (+)
LOC110499341 LOC106589760 coding upstream 714893 32747591 ~ 32760047 (+)
LOC118942063 NA coding downstream 11355 33528620 ~ 33530380 (+)
LOC110499362 LOC106589783 coding downstream 143878 33661321 ~ 33787514 (+)
rab23 LOC106589799 coding downstream 432309 33949752 ~ 33958728 (+)
LOC110499368 LOC106589788 coding downstream 467023 33984466 ~ 34178931 (+)
zmp:0000000760 LOC106589800 coding downstream 666637 34184080 ~ 34208986 (+)
G1686748 NA non-coding upstream 14136 33460602 ~ 33460804 (+)
G1686745 NA non-coding upstream 20017 33454699 ~ 33454923 (+)
G1686730 NA non-coding upstream 20294 33425854 ~ 33454646 (+)
G1686724 NA non-coding upstream 67355 33407186 ~ 33407585 (+)
G1686713 NA non-coding upstream 102365 33372041 ~ 33372575 (+)
G1686753 LOC106589781 non-coding downstream 16236 33533679 ~ 33559019 (+)
G1687114 NA non-coding downstream 87795 33605238 ~ 33605655 (+)
G1687142 NA non-coding downstream 108498 33625941 ~ 33626164 (+)
G1687156 NA non-coding downstream 119695 33637138 ~ 33637356 (+)
G1686317 LOC106589755 other upstream 813292 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3898382 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 4017019 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4696531 28778006 ~ 28778409 (+)
G1687675 NA other downstream 808394 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 1864266 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2163924 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2183777 35701200 ~ 35702156 (+)
G1689671 NA other downstream 2364135 35881578 ~ 35881874 (+)

Expression

LOC110499354 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

LOC110499354 Expression in each Bioproject

Bar chart with 15 bars.
LOC110499354 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network