LOC118942062 (LOC106589782)


Basic Information

Item Value
gene id LOC118942062
gene name LOC106589782
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33503010 ~ 33514611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956214.1
tgtgtgtgtgtgtgagactggtggtgtgtgtgtgcacgttgtatgtgtgtgagacCGGTGATGTGTATGAAATGGGCTCCCCCAAAGGTATACTGAACCAGGAAGTATTTACAGGCGGCCACTGGGCCTAGATGAGATAAGGAAAGATTAGTCAACGATGTCATCAGTCTTCAAGATTCTCCAGGAAGTGTGTTGGAGCTAGGAGCCAAACTTTAATGGAACTAAATGCAACCCTCACTCCAATTCTCAGTGCTGGAGCCCAGCTCCGCCCACAAggtgggagagaagaagaggaaggaccAGATCAAGAACCTCATCACTGGCACTGTCTGGAAAGATCTGGGCCAGCAATTTAAAAAGGAGGTACATATCAGAAATCTTCGGTCTCTCTTTAAGAAGCCCAAGCTGGAGAAAAGGGACATTGTGGAGCCCAGTGAGACTGGATCACTAGCAGCTCTCTTCTCCCCAACACAGGAGGACATCTAGGAGAACATAACAGCACAGAGAGGCTCTCAGActggactaacacacacacacactttctaccCTCCCCAGTGGAAATTTAGGATTGGCTCATCAAGGGTACAACGTCTCTATCctattggtcaacagtaggatGAATGGACTCTACAAACTGTGGACAAAGAGAATCAGAATATTCTGTCATGGACTGAACCCTGCTAACTGGTCATACATATTTATCCAAataatgtgtctgtctgccttgATCGAGAAAATGGGACAATGTGTCtgaagatgatgaagatgatggatATTGTCCTTCAGAGGACATGGCTGCTGCCATAAACCCTGCAGGTTGTAAATGGTAACAACACATTGCATTTACACAGCTCATATCTTCACTAGCACAACACATTTAACTTACATTGTGTTTTTGGTATCTCCTCTAACATGGGCCATCCACCTGGCTGCTAAACATAGAGAttgatagaggactcatctttatatCGGTGTCATTATAGCGTCTGACAGCATTGAGAATTGAGGCTACAACCCAGGGtcaagtagtcaactgggtggggattcctatttTAAAATGGTGGATGATGGCAATGCCCAAGGGGTGATacccatgatgagtcctctatctatgtCTACGGTGCTAAACAACAGCAGCAATTTTGTGCCAGAAGAATCTGAATGGAATCCAGTGAGCATTTCTGAGGTGGGAGACTTCAGAGTATCTGTATAAGgagagctgtcatcaagtcaaggTTTTGTACAGAATCATTACTCTGTTGATGGATGAAGTAGAACTGTCATTAATGTGAATTTATGTTTGTTTGTTCTAGTTCTCCCAGCTATGAACTGATGAGAAACCAGCACTACATTCCTCttatgttaaagggatagttggcTGCAACAAGTCTTGTCAGACATTATTGTTAAAAACTGACTTGTGGCTCATATTTTATAAATCTGTTTTGAAGGTGACATTGTTTCCACTTGGAAAATATCTACAAGCCTCAATCAGGGGACAAAGTATTTAAAATTGTAGTGCTTTTTCTATTTAGCTGTTTTTAGACAAAAGTAGACTAGAAAGTCAATTTAAATGGTTGATTTGACCATTTGCTGTGTTATGCAATGGTCTACAAATATAAGTATTATTTTGAAAATGTTCTAGCCGTGTTGTGGgggtaaaaaataatatttatagttagagaaataaaacatattttaaatgttGGATGTTAAATATTTAAACAGGACCAGAGACTTGAAACTCCACCCCCGAGTCCATGATGACTAAAGTTCATCTCAGTGCTGTAACTTTAATAACTCTCCAGGACTCATGTCTGTCTGACACACAACAACACTGGGATTTTATTTAGATTGTTCTGAAATATCAGGGTGCTAAACCAACCAATACAAGGTAATATCATCAAGACGGTGAACTTTACATGCATCTTCACTTGCTTTGAATAACGTGTCCGTTTAAGAGAGGACGTTTTAAAAGTGAAAGTGAAATTAACTTTCAGATCTCATACCAGAACAGGGAGTGACACCGTGTGAGAAAATGGCTTCTAGTTCATCTCTCCCAGAGGAGGATTTCTCCTGTACGGTGTGCCTTGACATCTTTAAGGATCCTGTCATTTTGCCATGCAGCCACAGCTTCTGCCAAGCCTGTCTAAAGGAATGCTGGAAAGACGAGGAATCTCGGGAATGTCCAGTTTGCAGGAGACGATCGTCTAAGGATCATCCCCTTATAAACCTTTCTCTATTGAACCTGTGTGAGGCCTTACGGGAAAGGAGACAGACAGATCCAACCACAGGGTCCAAGGTGCTCTGCAGTCTACACAGTGAGAAACTCAGtctgttctgtctggaggataaaGAGCCCATCTGTTTGGTGTGTCAGGTCTCAAGGAAACATAAAAATCATGACTGCATCCCTGTAGATGAGGCTGTACAGGATCACAAGGAGGAACTCCAGACTGACCTGAAGCCCTTACAGGAGAAGCTGAAGGTCTTTAATAAAGTTAAACAAACCTGTGATCAAACAGCAGTGCACATTAAGAGCCAGGCCCAGCACACAGAGAAGCAGATTAAGGAGGAGTTTGAGAAACTTCACCAGTTTCtacgagaggaagaggaggccagGATAGCTGCtctgaaagaggaagagaagcaGAAGAGTCAGAAGATGAAGGAGAAGATTGAGCAGATCTACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGAGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCATGAAGGTAAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGGGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAGTTCAGAGTCTGGGAGAAGATGAAGGAGATCATCAAACACACTCCTGTGATTCTGGACCCCAACACTGCATCCtcctggctctgtctgtctgatgatCTGACCAGTGTGAGTCAAACTGGCCCAAAGCAGCAGCTCCCTGACAACCCAGAGAGATTCATGAAGTATGCAACTATTCTGGGCTCTAAGGGGTTCAGCTCAGGTAAACACAgctgggaggtggaggtgggggatcATCCTGACTGGAACCTGGGCGTGGCTAAAGAGTCAGTTGACAGGAAGGGGGATGTTTATATATCACCAAAGTATGGATTCTGGGCTATACTGCAGAGGAGTGGTAAGTATATTAATGGAAAGGGAGAGACCGTCCTCCTGAAGAAGAAACCCCAGAGGATCAGAGTTCAGCTGGACTACGACCAGGGGGAGGTGTCCTTCTACGACTCCAAAGACATGACACTCATCTACACTCATAAAGACACATTCACTGAGACTCTCTACCCGTACTTCTCTATTGGATCAGCTGGTGATGCCAAAAGCACTGGTGTACAGATCTGCCAATCAGAGGTATCAGCACATGTCAGTTAAACATGCTGTATTGGTTAATTAGTCTAGTtaatctagccagctatctaaactatTCATCATGACCGAATTACTAACCTTGCATGCAGGGtacgtgcccaggggccctgacctccagggagcCCCAATTGATTATgttgtgtagaattgcatgaaatgatgTGTAAAACTACAAAATAATTGTTCTGTAATGCAAACTCATATGTTTACTTTTTGTTAATAAAACTCTTGTTCTGCAAA
>XM_036956215.1
agagagagagactcttttTCATTCTGTTCTTTCCCCATTCCCCCATCATCAGACaagcagagtagagcaggacagagagagacgtgAGCCAACAAGTGCAGAACAGAACAACTccacaaagagaagagagaggaggatagttCCCTTTGCAAGGACAGAAAAAGAGAAGAAAATCAAGCCTTTCAGAAAACACCAACAGTAGAAGAAATATGAGACTGCAGCACATTTAAATCCAATAATCTTCTTTGCTCACCAACTGAGGACTTATTTGTAGCCCCATTTTATGTTGGAACAGTTAGATTTCTTTCTCATTCTACAAGAGGCTACACACTGATTGTAGAAAACCTTCACTGTGTAGTATAACTTTTTGAAGAGAGAAGTAGGAGGCTACAGAGATGGAGATCATGCCCGGGAGAGGAGCTTGTTCTGGAGCAGGCATGGGGAGGTTACCTGGGTACCTGGTGTGTGTGCTGGTTCTCTGTGCCCTGGTGACAGGCTATGCCAGCACATGCCCTGCCCTGTGCACCTGCAGTGGCACCACAGTTGACTGCCATGGGCTGGGCATCAAAACCATGCCCCGGAATATACCTCGCAACACAGAGAGAATTGCTGGAGCCCAGCTCCGCCCACAAggtgggagagaagaagaggaaggaccAGATCAAGAACCTCATCACTGGCACTGTCTGGAAAGATCTGGGCCAGCAATTTAAAAAGGAGGTACATATCAGAAATCTTCGGTCTCTCTTTAAGAAGCCCAAGCTGGAGAAAAGGGACATTGTGGAGCCCAGTGAGACTGGATCACTAGCAGCTCTCTTCTCCCCAACACAGGAGGACATCTAGGAGAACATAACAGCACAGAGAGGCTCTCAGActggactaacacacacacacactttctaccCTCCCCAGTGGAAATTTAGGATTGGCTCATCAAGGGTACAACGTCTCTATCctattggtcaacagtaggatGAATGGACTCTACAAACTGTGGACAAAGAGAATCAGAATATTCTGTCATGGACTGAACCCTGCTAACTGGTCATACATATTTATCCAAataatgtgtctgtctgccttgATCGAGAAAATGGGACAATGTGTCtgaagatgatgaagatgatggatATTGTCCTTCAGAGGACATGGCTGCTGCCATAAACCCTGCAGGTTGTAAATGGTAACAACACATTGCATTTACACAGCTCATATCTTCACTAGCACAACACATTTAACTTACATTGTGTTTTTGGTATCTCCTCTAACATGGGCCATCCACCTGGCTGCTAAACATAGAGAttgatagaggactcatctttatatCGGTGTCATTATAGCGTCTGACAGCATTGAGAATTGAGGCTACAACCCAGGGtcaagtagtcaactgggtggggattcctatttTAAAATGGTGGATGATGGCAATGCCCAAGGGGTGATacccatgatgagtcctctatctatgtCTACGGTGCTAAACAACAGCAGCAATTTTGTGCCAGAAGAATCTGAATGGAATCCAGTGAGCATTTCTGAGGTGGGAGACTTCAGAGTATCTGTATAAGgagagctgtcatcaagtcaaggTTTTGTACAGAATCATTACTCTGTTGATGGATGAAGTAGAACTGTCATTAATGTGAATTTATGTTTGTTTGTTCTAGTTCTCCCAGCTATGAACTGATGAGAAACCAGCACTACATTCCTCttatgttaaagggatagttggcTGCAACAAGTCTTGTCAGACATTATTGTTAAAAACTGACTTGTGGCTCATATTTTATAAATCTGTTTTGAAGGTGACATTGTTTCCACTTGGAAAATATCTACAAGCCTCAATCAGGGGACAAAGTATTTAAAATTGTAGTGCTTTTTCTATTTAGCTGTTTTTAGACAAAAGTAGACTAGAAAGTCAATTTAAATGGTTGATTTGACCATTTGCTGTGTTATGCAATGGTCTACAAATATAAGTATTATTTTGAAAATGTTCTAGCCGTGTTGTGGgggtaaaaaataatatttatagttagagaaataaaacatattttaaatgttGGATGTTAAATATTTAAACAGGACCAGAGACTTGAAACTCCACCCCCGAGTCCATGATGACTAAAGTTCATCTCAGTGCTGTAACTTTAATAACTCTCCAGGACTCATGTCTGTCTGACACACAACAACACTGGGATTTTATTTAGATTGTTCTGAAATATCAGGGTGCTAAACCAACCAATACAAGGTAATATCATCAAGACGGTGAACTTTACATGCATCTTCACTTGCTTTGAATAACGTGTCCGTTTAAGAGAGGACGTTTTAAAAGTGAAAGTGAAATTAACTTTCAGATCTCATACCAGAACAGGGAGTGACACCGTGTGAGAAAATGGCTTCTAGTTCATCTCTCCCAGAGGAGGATTTCTCCTGTACGGTGTGCCTTGACATCTTTAAGGATCCTGTCATTTTGCCATGCAGCCACAGCTTCTGCCAAGCCTGTCTAAAGGAATGCTGGAAAGACGAGGAATCTCGGGAATGTCCAGTTTGCAGGAGACGATCGTCTAAGGATCATCCCCTTATAAACCTTTCTCTATTGAACCTGTGTGAGGCCTTACGGGAAAGGAGACAGACAGATCCAACCACAGGGTCCAAGGTGCTCTGCAGTCTACACAGTGAGAAACTCAGtctgttctgtctggaggataaaGAGCCCATCTGTTTGGTGTGTCAGGTCTCAAGGAAACATAAAAATCATGACTGCATCCCTGTAGATGAGGCTGTACAGGATCACAAGGAGGAACTCCAGACTGACCTGAAGCCCTTACAGGAGAAGCTGAAGGTCTTTAATAAAGTTAAACAAACCTGTGATCAAACAGCAGTGCACATTAAGAGCCAGGCCCAGCACACAGAGAAGCAGATTAAGGAGGAGTTTGAGAAACTTCACCAGTTTCtacgagaggaagaggaggccagGATAGCTGCtctgaaagaggaagagaagcaGAAGAGTCAGAAGATGAAGGAGAAGATTGAGCAGATCTACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGAGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCATGAAGGTAAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGGGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAGTTCAGAGTCTGGGAGAAGATGAAGGAGATCATCAAACACACTCCTGTGATTCTGGACCCCAACACTGCATCCtcctggctctgtctgtctgatgatCTGACCAGTGTGAGTCAAACTGGCCCAAAGCAGCAGCTCCCTGACAACCCAGAGAGATTCATGAAGTATGCAACTATTCTGGGCTCTAAGGGGTTCAGCTCAGGTAAACACAgctgggaggtggaggtgggggatcATCCTGACTGGAACCTGGGCGTGGCTAAAGAGTCAGTTGACAGGAAGGGGGATGTTTATATATCACCAAAGTATGGATTCTGGGCTATACTGCAGAGGAGTGGTAAGTATATTAATGGAAAGGGAGAGACCGTCCTCCTGAAGAAGAAACCCCAGAGGATCAGAGTTCAGCTGGACTACGACCAGGGGGAGGTGTCCTTCTACGACTCCAAAGACATGACACTCATCTACACTCATAAAGACACATTCACTGAGACTCTCTACCCGTACTTCTCTATTGGATCAGCTGGTGATGCCAAAAGCACTGGTGTACAGATCTGCCAATCAGAGGTATCAGCACATGTCAGTTAAACATGCTGTATTGGTTAATTAGTCTAGTtaatctagccagctatctaaactatTCATCATGACCGAATTACTAACCTTGCATGCAGGGtacgtgcccaggggccctgacctccagggagcCCCAATTGATTATgttgtgtagaattgcatgaaatgatgTGTAAAACTACAAAATAATTGTTCTGTAATGCAAACTCATATGTTTACTTTTTGTTAATAAAACTCTTGTTCTGCAAA

Function

NR:

description
tripartite motif-containing protein 35-like

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956214.1 False 3691 mRNA 0.44 7 33503010 33508162
XM_036956215.1 True 4048 mRNA 0.44 8 33503010 33514611

Neighbor

gene id symbol gene type direction distance location
LOC110499353 LOC106589782 coding downstream 3091 33489351 ~ 33499919 (-)
LOC110499355 LOC106589782 coding downstream 16752 33475694 ~ 33486258 (-)
LOC110499533 slit1 coding downstream 30409 33292275 ~ 33472601 (-)
morn4 LOC106589769 coding downstream 292442 33204195 ~ 33210568 (-)
st3gal7 LOC106589773 coding downstream 328005 33163695 ~ 33175005 (-)
LOC118942061 LOC106589782 coding upstream 3039 33517650 ~ 33520906 (-)
LOC110499358 LOC106589782 coding upstream 16334 33530945 ~ 33535225 (-)
LOC110499360 LOC106589782 coding upstream 22623 33524385 ~ 33544273 (-)
LOC110499361 LOC106589781 coding upstream 31208 33545819 ~ 33578200 (-)
LOC110499535 NA coding upstream 335449 33850060 ~ 33938490 (-)
G1687068 NA non-coding downstream 39726 33463039 ~ 33463284 (-)
G1687044 NA non-coding downstream 95121 33407604 ~ 33407889 (-)
G1687038 NA non-coding downstream 114398 33388284 ~ 33388612 (-)
G1687032 NA non-coding downstream 141087 33361724 ~ 33361923 (-)
G1687029 NA non-coding downstream 145707 33357096 ~ 33357303 (-)
G1687007 LOC106589782 non-coding upstream 16473 33531084 ~ 33544238 (-)
G1687143 NA non-coding upstream 111383 33625994 ~ 33626216 (-)
G1687159 NA non-coding upstream 124946 33639557 ~ 33639948 (-)
G1687164 NA non-coding upstream 127949 33642560 ~ 33642795 (-)
G1686887 NA other downstream 424983 33077810 ~ 33078027 (-)
LOC110499342 LOC106589762 other downstream 690156 32810995 ~ 32812999 (-)
G1684920 NA other downstream 2090166 31407594 ~ 31412844 (-)
G1684661 NA other downstream 2389324 31111555 ~ 31113686 (-)
LOC110499315 LOC106589727 other downstream 3956693 29541315 ~ 29571033 (-)
G1689130 NA other upstream 1744378 35258989 ~ 35259818 (-)
G1689131 NA other upstream 1745275 35259886 ~ 35260208 (-)
G1689461 NA other upstream 1963503 35478114 ~ 35480057 (-)

Expression


Co-expression Network