LOC118942061 (LOC106589782)


Basic Information

Item Value
gene id LOC118942061
gene name LOC106589782
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33517650 ~ 33520906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956212.1
ACTCCACCCTCGAGTCACATGATGACTAAAGTTCATCTCAGTGCTGTAACTTTAATAACTCTCCAGGACTCATGTCTGTCTGACACACAACAACACTGGGATTTTATTTAGATTGTTCTGAAATATCAGGGTAATAAACCAACCAATACAAGATCTCATACCAGGACAGGGAGTGACATCGTGTGAGAAAATGGCTTCTAGTTCGTCTCTCCCAGAGGAGGATTTCTCCTGTACGGTGTGCCTTGACATCTTTAAGGATCCTGTCATCTTGTCATGCAGCCACAGCTTCTGCCAAGCCTGTCTAAAGGAATGCTGGAAAGACAAGGAATCTCTGTCATGTCCACTTTGCAGGAGACGATCGTCTAAGGATCATCCCCCTATAAACCTTTCTCTAAAGAACCTGTGTGAGGCCTTACGGGAAAGGAGACAGACAGATCCAACCACAGGTTCCAAGGTGCTCTGCAGTCAACACAGTGAGAAACTCAGtctgttctgtctggaggataaaGAGCCCATCTGTTTGGTGTGTCAGGTCTCAAGGAAACATAAAGATCATGACTGCATCCCTGTAGATGAGGCTGTACAGGATCACAAGGAGGAACTCCAGACTGACCTGAAGCCCTTACAGGAGAAGCTGAAGGTCTTTAATAAAGTTAAACAAACCTGTGATCAAACAGCAGTGCACATTAAGAGCCAGGCCCAGCACACAGAGAAGCAGATTAAGAAGGAGTTTGAGAAACTTCACCAGTTTCTACGAAAGGAAGAGGAGGCCAGGATAGCTGCtttgaaagaggaagagaagcaGAAGAGTcagaagatgaagaagaagattgAGCAGATGAACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGGGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCACGAAGGGAAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGTGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAGTTCAGAGTCTGGAAGAAGATGCAGGAGATCATCAAACACACTCCTGTGATTCTGGATCCCAACACTGCATCctcctggctctctctgtctgatGATCTGACCAGTGTGAGTCGAACTGCCCCAAAGCAGCAGCTCCCTGACAACCCAGAGAGATTCATGAAGTATACAACTATTCTGGGCTCTAAGGGGTTCAGCTCAGGTAAACACAGCTGGGAGGTGGAGCTGGGTGACCGTCCTTGCTGGATTATGGGCGTGGCTAAAGAGTCAATTGACAGGAAGGGGGAGCTGTTTGCATCACCAGAGTATGGAATCTGGGCTATACGGCAGGATAGTTGTAAGTATAGTAATGGAAAGGGAGAGACCCTCCTCCTGAAGAAGAAACCCCAGAGGATCAGAGTTCAGCTGGACTACGACCAGGGGGAGGTGTCCTTCTACGACTCCAAAGACATGACACTCATCTACACTCATAAAGACACATTCACTGAGACTCTCTACCCGTACTTCCATATTGGATCAGCTGGTGATGTGAAAAGCACTGGTGTTCAGATCTGCCAATCAGAGGTGTCAGCCCATGTCAGTTAAACATGTTGTATTGGTTAATTAGTCTAGTtaatctagccagctatctaaactagTCATCATGACCGACTTACTAACCGTGCATGCAGGGtacgtgcccaggggccctgacctccagggagcCCCAATTGATTATgttgtgtagaattgcatgaaatgatgTGTAAAACTACAAAATAATTGTTCTGTAATGCAAACTCATATGTTTACTTTTTGTTAATAAAACTCTTGTTCTGCAAA
>XM_036956213.1
AACTCCACCCTCGAGTCACATGATGACTAAAGTTCATCTCAGTGCTGTAACTTTAATAACTCTCCAGGACTCATGTCTGTCTGACACACAACAACACTGGGATTTTATTTAGATTGTTCTGAAATATCAGGGTAATAAACCAACCAATACAAGGACAGGGAGTGACATCGTGTGAGAAAATGGCTTCTAGTTCGTCTCTCCCAGAGGAGGATTTCTCCTGTACGGTGTGCCTTGACATCTTTAAGGATCCTGTCATCTTGTCATGCAGCCACAGCTTCTGCCAAGCCTGTCTAAAGGAATGCTGGAAAGACAAGGAATCTCTGTCATGTCCACTTTGCAGGAGACGATCGTCTAAGGATCATCCCCCTATAAACCTTTCTCTAAAGAACCTGTGTGAGGCCTTACGGGAAAGGAGACAGACAGATCCAACCACAGGTTCCAAGGTGCTCTGCAGTCAACACAGTGAGAAACTCAGtctgttctgtctggaggataaaGAGCCCATCTGTTTGGTGTGTCAGGTCTCAAGGAAACATAAAGATCATGACTGCATCCCTGTAGATGAGGCTGTACAGGATCACAAGGAGGAACTCCAGACTGACCTGAAGCCCTTACAGGAGAAGCTGAAGGTCTTTAATAAAGTTAAACAAACCTGTGATCAAACAGCAGTGCACATTAAGAGCCAGGCCCAGCACACAGAGAAGCAGATTAAGAAGGAGTTTGAGAAACTTCACCAGTTTCTACGAAAGGAAGAGGAGGCCAGGATAGCTGCtttgaaagaggaagagaagcaGAAGAGTcagaagatgaagaagaagattgAGCAGATGAACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGGGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCACGAAGGGAAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGTGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAGTTCAGAGTCTGGAAGAAGATGCAGGAGATCATCAAACACACTCCTGTGATTCTGGATCCCAACACTGCATCctcctggctctctctgtctgatGATCTGACCAGTGTGAGTCGAACTGCCCCAAAGCAGCAGCTCCCTGACAACCCAGAGAGATTCATGAAGTATACAACTATTCTGGGCTCTAAGGGGTTCAGCTCAGGTAAACACAGCTGGGAGGTGGAGCTGGGTGACCGTCCTTGCTGGATTATGGGCGTGGCTAAAGAGTCAATTGACAGGAAGGGGGAGCTGTTTGCATCACCAGAGTATGGAATCTGGGCTATACGGCAGGATAGTTGTAAGTATAGTAATGGAAAGGGAGAGACCCTCCTCCTGAAGAAGAAACCCCAGAGGATCAGAGTTCAGCTGGACTACGACCAGGGGGAGGTGTCCTTCTACGACTCCAAAGACATGACACTCATCTACACTCATAAAGACACATTCACTGAGACTCTCTACCCGTACTTCCATATTGGATCAGCTGGTGATGTGAAAAGCACTGGTGTTCAGATCTGCCAATCAGAGGTGTCAGCCCATGTCAGTTAAACATGTTGTATTGGTTAATTAGTCTAGTtaatctagccagctatctaaactagTCATCATGACCGACTTACTAACCGTGCATGCAGGGtacgtgcccaggggccctgacctccagggagcCCCAATTGATTATgttgtgtagaattgcatgaaatgatgTGTAAAACTACAAAATAATTGTTCTGTAATGCAAACTCATATGTTTACTTTTTGTTAATAAAACTCTTGTTCTGCAAA
>XM_036956211.1
GTAAACTCCACCCTCGAGTCACATGATGACTAAAGTTCATCTCAGTGCTGTAACTTTAATAACTCTCCAGGACTCATGTCTGTCTGACACACAACAACACTGGGATTTTATTTAGATTGTTCTGAAATATCAGGGTAATAAACCAACCAATACAAGGTAATATCATCAAGACTGTGAACTTTACATTCAGCTTCATTTACATTTGAATGTGTCTGTTTCAGAGAGGAATTTGTTAAAAGTGAAATTAACTTTCAGATCTCATACCAGGACAGGGAGTGACATCGTGTGAGAAAATGGCTTCTAGTTCGTCTCTCCCAGAGGAGGATTTCTCCTGTACGGTGTGCCTTGACATCTTTAAGGATCCTGTCATCTTGTCATGCAGCCACAGCTTCTGCCAAGCCTGTCTAAAGGAATGCTGGAAAGACAAGGAATCTCTGTCATGTCCACTTTGCAGGAGACGATCGTCTAAGGATCATCCCCCTATAAACCTTTCTCTAAAGAACCTGTGTGAGGCCTTACGGGAAAGGAGACAGACAGATCCAACCACAGGTTCCAAGGTGCTCTGCAGTCAACACAGTGAGAAACTCAGtctgttctgtctggaggataaaGAGCCCATCTGTTTGGTGTGTCAGGTCTCAAGGAAACATAAAGATCATGACTGCATCCCTGTAGATGAGGCTGTACAGGATCACAAGGAGGAACTCCAGACTGACCTGAAGCCCTTACAGGAGAAGCTGAAGGTCTTTAATAAAGTTAAACAAACCTGTGATCAAACAGCAGTGCACATTAAGAGCCAGGCCCAGCACACAGAGAAGCAGATTAAGAAGGAGTTTGAGAAACTTCACCAGTTTCTACGAAAGGAAGAGGAGGCCAGGATAGCTGCtttgaaagaggaagagaagcaGAAGAGTcagaagatgaagaagaagattgAGCAGATGAACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGGGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCACGAAGGGAAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGTGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAGTTCAGAGTCTGGAAGAAGATGCAGGAGATCATCAAACACACTCCTGTGATTCTGGATCCCAACACTGCATCctcctggctctctctgtctgatGATCTGACCAGTGTGAGTCGAACTGCCCCAAAGCAGCAGCTCCCTGACAACCCAGAGAGATTCATGAAGTATACAACTATTCTGGGCTCTAAGGGGTTCAGCTCAGGTAAACACAGCTGGGAGGTGGAGCTGGGTGACCGTCCTTGCTGGATTATGGGCGTGGCTAAAGAGTCAATTGACAGGAAGGGGGAGCTGTTTGCATCACCAGAGTATGGAATCTGGGCTATACGGCAGGATAGTTGTAAGTATAGTAATGGAAAGGGAGAGACCCTCCTCCTGAAGAAGAAACCCCAGAGGATCAGAGTTCAGCTGGACTACGACCAGGGGGAGGTGTCCTTCTACGACTCCAAAGACATGACACTCATCTACACTCATAAAGACACATTCACTGAGACTCTCTACCCGTACTTCCATATTGGATCAGCTGGTGATGTGAAAAGCACTGGTGTTCAGATCTGCCAATCAGAGGTGTCAGCCCATGTCAGTTAAACATGTTGTATTGGTTAATTAGTCTAGTtaatctagccagctatctaaactagTCATCATGACCGACTTACTAACCGTGCATGCAGGGtacgtgcccaggggccctgacctccagggagcCCCAATTGATTATgttgtgtagaattgcatgaaatgatgTGTAAAACTACAAAATAATTGTTCTGTAATGCAAACTCATATGTTTACTTTTTGTTAATAAAACTCTTGTTCTGCAAA

Function

NR:

description
tripartite motif-containing protein 35-like

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956212.1 False 1843 mRNA 0.46 7 33517650 33520902
XM_036956213.1 False 1832 mRNA 0.46 7 33517650 33520903
XM_036956211.1 True 1946 mRNA 0.45 6 33517650 33520906

Neighbor

gene id symbol gene type direction distance location
LOC118942062 LOC106589782 coding downstream 3039 33503010 ~ 33514611 (-)
LOC110499353 LOC106589782 coding downstream 17731 33489351 ~ 33499919 (-)
LOC110499355 LOC106589782 coding downstream 31392 33475694 ~ 33486258 (-)
LOC110499533 slit1 coding downstream 45049 33292275 ~ 33472601 (-)
morn4 LOC106589769 coding downstream 307082 33204195 ~ 33210568 (-)
LOC110499358 LOC106589782 coding upstream 10039 33530945 ~ 33535225 (-)
LOC110499360 LOC106589782 coding upstream 16328 33524385 ~ 33544273 (-)
LOC110499361 LOC106589781 coding upstream 24913 33545819 ~ 33578200 (-)
LOC110499535 NA coding upstream 329154 33850060 ~ 33938490 (-)
bag2 bag2 coding upstream 448182 33969088 ~ 33971824 (-)
G1687068 NA non-coding downstream 54366 33463039 ~ 33463284 (-)
G1687044 NA non-coding downstream 109761 33407604 ~ 33407889 (-)
G1687038 NA non-coding downstream 129038 33388284 ~ 33388612 (-)
G1687032 NA non-coding downstream 155727 33361724 ~ 33361923 (-)
G1687029 NA non-coding downstream 160347 33357096 ~ 33357303 (-)
G1687007 LOC106589782 non-coding upstream 10178 33531084 ~ 33544238 (-)
G1687143 NA non-coding upstream 105088 33625994 ~ 33626216 (-)
G1687159 NA non-coding upstream 118651 33639557 ~ 33639948 (-)
G1687164 NA non-coding upstream 121654 33642560 ~ 33642795 (-)
G1686887 NA other downstream 439623 33077810 ~ 33078027 (-)
LOC110499342 LOC106589762 other downstream 704796 32810995 ~ 32812999 (-)
G1684920 NA other downstream 2104806 31407594 ~ 31412844 (-)
G1684661 NA other downstream 2403964 31111555 ~ 31113686 (-)
LOC110499315 LOC106589727 other downstream 3971333 29541315 ~ 29571033 (-)
G1689130 NA other upstream 1738083 35258989 ~ 35259818 (-)
G1689131 NA other upstream 1738980 35259886 ~ 35260208 (-)
G1689461 NA other upstream 1957208 35478114 ~ 35480057 (-)

Expression


Co-expression Network