LOC118942063


Basic Information

Item Value
gene id LOC118942063
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33528620 ~ 33530380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037983.1
CTCTACACACAGGGTTATCTATGGAGAGGTGTATAATACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTACAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCAATCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCAATCTACACACAGGGTTATCTATGGAGAGGTGTATGGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTACGGTACTGACCCCTCTACACACAGGGTTATCTATGGagaggtgtagtggtgtataaTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTACAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCATTTACACACAGGGTTATCT
>TU1929330
AGGTGTAGTGGTTTATAGTACTGACCCCTCTACACGCAGGGTTATCTATGGAGAGGTGTACAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGgtgtagtggtgtatagtactgACC
>TU1929331
AGGTGTAGTGGTTTATAGTACTGACCCCTCTACACGCAGGGTTATCTATGGAGAGGTGTACAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTAGTGGTTTATAGGAGTGACCCCTCTACACACAGGGATATCTATGGAGAGGTGTAGTGGTTTGTAGGAGTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCAATCTACACACAGGGTTATCTATGGAG
>TU1929332
AGGTGTAGTGGTTTATAGTACTGACCCCTCTACACGCAGGGTTATCTATGGAGAGGTGTACAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTAGTGGTTTGTAGGAGTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAATACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTAGTGGTTTATAGGAGTGACCCCTCTACACACAGGGATATCTATTTAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGgtgtagtggtgtatagtactgACC
>TU1929335
AGGTGTAGTGGTTTATAGTACTGACCCCTCTACACGCAGGGTTATCTATGGAGAGGTGTACAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTAGTGGTTTGTAGGAGTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAATACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTAGTGGTTTATAGGAGTGACCCCTCTACACACAGGGATATCTATTTAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCAATCTACACACAGGGTTATCTATGGAGAGGTGTATGGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTACGGTACTGACCCCTCTACACACAGGGTTATCTATGGagaggtgtagtggtgtataaTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATTTAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGgtgtagtggtgtatagtactgACC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106591180 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037983.1 False 523 mRNA 0.46 4 33528798 33529479
TU1929330 False 259 lncRNA 0.47 5 33528620 33530380
TU1929331 False 339 lncRNA 0.47 3 33528620 33529154
TU1929332 False 410 lncRNA 0.47 6 33528620 33530380
TU1929335 True 643 lncRNA 0.46 7 33528620 33530380

Neighbor

gene id symbol gene type direction distance location
LOC110499354 NA coding upstream 11355 33474940 ~ 33517443 (+)
LOC110499352 LOC106589767 coding upstream 266664 33216272 ~ 33262134 (+)
LOC118942060 LOC106589768 coding upstream 332631 33177293 ~ 33196167 (+)
LOC110499532 hpse2 coding upstream 395973 33063035 ~ 33132825 (+)
LOC110499344 LOC106589763 coding upstream 665409 32849697 ~ 32863389 (+)
LOC110499362 LOC106589783 coding downstream 131842 33661321 ~ 33787514 (+)
rab23 LOC106589799 coding downstream 420273 33949752 ~ 33958728 (+)
LOC110499368 LOC106589788 coding downstream 454987 33984466 ~ 34178931 (+)
zmp:0000000760 LOC106589800 coding downstream 654601 34184080 ~ 34208986 (+)
col21a1 LOC106589801 coding downstream 696392 34225871 ~ 34271548 (+)
G1686760 LOC106589782 non-coding upstream 22741 33491588 ~ 33506057 (+)
G1686759 NA non-coding upstream 26389 33488179 ~ 33502409 (+)
G1686758 NA non-coding upstream 51651 33476617 ~ 33477147 (+)
G1686748 NA non-coding upstream 67994 33460602 ~ 33460804 (+)
G1686745 NA non-coding upstream 73875 33454699 ~ 33454923 (+)
G1686753 LOC106589781 non-coding downstream 4200 33533679 ~ 33559019 (+)
G1687114 NA non-coding downstream 75759 33605238 ~ 33605655 (+)
G1687142 NA non-coding downstream 96462 33625941 ~ 33626164 (+)
G1687156 NA non-coding downstream 107659 33637138 ~ 33637356 (+)
G1687188 NA non-coding downstream 129923 33659402 ~ 33659854 (+)
G1686317 LOC106589755 other upstream 867150 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 3952240 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 4070877 29437357 ~ 29458499 (+)
G1681792 NA other upstream 4750389 28778006 ~ 28778409 (+)
G1687675 NA other downstream 796358 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 1852230 35381609 ~ 35384567 (+)
G1689347 NA other downstream 2151888 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 2171741 35701200 ~ 35702156 (+)
G1689671 NA other downstream 2352099 35881578 ~ 35881874 (+)

Expression


Co-expression Network