LOC110499358 (LOC106589782)


Basic Information

Item Value
gene id LOC110499358
gene name LOC106589782
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33530945 ~ 33535225 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576442.2
AGATCCTAGTGATGGATGACTGCTGtgtgtgtaggagagagagagactcttttTCATTCTGCTCTTTCCCCATTCCCCCCATCATCAGACaagcagagtagagcaggacagagagagacgtgAGCCAACAAGTGCAGAACAGAACAACTccacaaagagaagagagaggaggatagttCCCTTTGCAAGGACAGAACAAGAGAAGATAATCAAGCCTTTCAGAAAACACCAACAGGAGAAGAAATATGAGACTGCAGCACATTTAAATCCTCTAACCTTCTTTGCTCACCAACTGAGGACTTATTTGTAGCCCCTTTTTATGTTGGAACAGTTAGATTTCTTTCTCATTCTTCAAGAGGCTACACACTGATTGTAGAAAACCTTCACTGTGTAGTAGGACTTTCGGATTttgaagagagaatgagaaagagggagaaagaaagagaaaagaagGCTTTTTGGAGCCAGGTTTTTAGAAGCGGGAGGCCGCAGTGGTGGAGATCATGCCCGGGAGAGGAGCTTGTTCTGGGGCAGGCATGGGGAAGTTGCCTGGTAAAGATTGAACATTTACAAAGTAGGTGCACACAGGCAGAGGGAAaaagaggtgacagacagtgacacatgtaaTACCGCCTTGCATGCTCTTCCCTTCATCTAGCTTATCGagtgtgtaatcattagtccaacagttgcaaatgagagtttctattggataaattcaggtatgtttattccCGTTTTGTTCCTGGTCAgacgtaaacacagttcacattCATatcagccacgttgtattccttcttgcataataataaaataaataaataaaagtgaagTCCTCTGTCATTGGCCCTGTTTGTTCTTGGGTGCAGGTTAAACAGGTATTCCCAGGTTCACAGTAAACTCCACCCCCGAGTCACATGATGACTGAAGTTCATCTCAGTGCTGTAACTTTAATAACTCTCCAGGACTCATGTCTGTCTGACACACAACAACACTGGGATTTTATTTAGATTGTTCTGAAATATCAGGGTAATAAACCAACCAATACAAGGACAGGGAGTGACACCGTGTGAGAAAATGGCTTCTAGTTCGTCTCTCCCAGAGGAGGATTTCTCCTGTACGGTGTGCCTTGACATCTTTAAGGATCCTGTCATCTTGTCATGCAGCCACAGCTTCTGCCAAGCCTGTCTAAAGGAATGCTGGAAAGACAAGGAATCTCTGTCATGTCCACTTTGCAGGAGACGATCGTCTAAGGATCATCCCCCTATAAACCTTTCTCTAAAGAACCTGTGTGAGGCCTTACGGGAAAGGAGACAGACAGATCCAACCACAGGGTCCAAGGTGCTCTGCAGTCAACACAGTGAGAAACTCAGtctgttctgtctggaggataaaGAGCCCATCTGTTTGGTGTGTCAGGTCTCAAGGAAACATAAAAATCATGACTGCATCCCTGTAGATGAGGCTGTACAGGATCACAAGGAGGAACTCCAGACTGACCTGATGCCCTTACAGGAGAAGCTGAAGGTCTTTAATAAAGTTAAACAAACCTGTGATCAAACAGCAGTGCACATTAAGAGCCAGGCCCAGCACACAGAGAAGCAGATTAAGGAGGAGTTTGAGAAACTTCACCAGTTTCtacgagaggaagaggaggccagGATAGCTGCtctgaaagaggaagagaagcaGAAGAGTCAGAAGATGAAGGAGAAGATTGAGCAGATGAACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGGGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCATGAAGGTAAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGTGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAGTTCAGAGTCTGGGAGAAGATGAAGGAGATCATCAAACACACTCCTGTGATTCTGGACCCCAACACTGcattctcctgtctctctctgtctgatgaTCTGACCAGTGTGAGTCGAACTGGCCCAAAGCAGCAGCTCCCTGACAACCCAGAGAGATTCATGAAGTATCAAAATGTTCTGGGCTCTAAGGGGTTCAGCTCAGGTAAACACAGCTGGGAGGTGGAGGTTGGGGATCATCCTCACTGGAACCTGGGCGTGGCTAAAGAATCAGCTGACAGGAAGGGGGAGCGGCATGCATCACCAGAGTATGGAATCTGGGCCATACTGCAGAGGAGTGGTAAGTATACTAATGGAAAGGGAGAGACCCTCCTCCTGAAGAAGAAACCCCAGAGGATCAGAGTTCAGCTGGACTACGACCAGGGGGAGGTGTCCTTCTACGACTCCAAAGACATGACACTCATCTACACTCATAAATACACATTCACTGAGACTCTCCACCCGTACTTCTCTATTGGATCAGCTGTTGATGCCAAAAACACTGGTGTTCAGATCTGCCAATCAGAGGTGTCTCTGACAGTGATATCATCCCAAtgaggttatgtgtgtgtgtgtgttgttgttggtgaaATTActagattatgttataatactgttaTTGTATCAAATGGTTGTTTTCTGGAGTAGAATGGTGTTTTTAGAACACTCATCTGTGGTCTTCTGAGTTGGACCTCTGGGACTTAATGCTGACAGTAGATTTACCATCCATTCATGTGAGGGAGATTGCTCCGGTTTGACTGgaaggtaccagggagagatggctcgGGTATAGATACTTATGAGAGGAACCCTGTTTTGGGGACCAGACCCTGGTTTACTCACAATGAGAACAGtctttacagcagatactgtctgctgtgaattattaATTAATTTAATATGAATCCTAACCTTGTGGCCCATTCCACACATCTGTTGTTTATCATGTAGACTAAGGGGGtgtatctttgctataaaagGTATTTGTATCCTTTGTCTCAGGGCTCTCAACCCAACAGTCACCATGTTGGGTCGACCAGCCATCGTTATTGCTCTGTGCTTTCCTTATTACAAGTTTATAATAAAGTCATATCCTTAT
>TU1929645
TTTAATAACTCTCCAGGACTCATGTCTGTCTGACACACAACAACACTGGGATTTTATTTAGATTGTTCTGAAATATCAGGGTAATAAACCAACCAATACAAGGACAGGGAGTGACACCGTGTGAGAAAATGGCTTCTAGTTCGTCTCTCCCAGAGGAGGATTTCTCCTGTACGGTGTGCCTTGACATCTTTAAGGATCCTGTCATCTTGTCATGCAGCCACAGCTTCTGCCAAGCCTGTCTAAAGGAATGCTGGAAAGACAAGGAATCTCTGTCATGTCCACTTTGCAGGAGACGATCGTCTAAGGATCATCCCCCTATAAACCTTTCTCTAAAGAACCTGTGTGAGGCCTTACGGGAAAGGAGACAGACAGATCCAACCACAGGGTCCAAGGTGCTCTGCAGTCAACACAGTGAGAAACTCAGtctgttctgtctggaggataaaGAGCCCATCTGTTTGGTGTGTCAGGTCTCAAGGAAACATAAA

Function

NR:

description
tripartite motif-containing protein 35-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576442.2 False 3043 mRNA 0.45 7 33530945 33535225
TU1929645 True 488 TUCP 0.46 2 33533673 33534276

Neighbor

gene id symbol gene type direction distance location
LOC118942061 LOC106589782 coding downstream 10039 33517650 ~ 33520906 (-)
LOC118942062 LOC106589782 coding downstream 16334 33503010 ~ 33514611 (-)
LOC110499353 LOC106589782 coding downstream 31026 33489351 ~ 33499919 (-)
LOC110499355 LOC106589782 coding downstream 44687 33475694 ~ 33486258 (-)
LOC110499533 slit1 coding downstream 58344 33292275 ~ 33472601 (-)
LOC110499360 LOC106589782 coding upstream 2009 33524385 ~ 33544273 (-)
LOC110499361 LOC106589781 coding upstream 10594 33545819 ~ 33578200 (-)
LOC110499535 NA coding upstream 314835 33850060 ~ 33938490 (-)
bag2 bag2 coding upstream 433863 33969088 ~ 33971824 (-)
znf451 znf451 coding upstream 436917 33972142 ~ 33983890 (-)
G1687070 NA non-coding downstream 11170 33504882 ~ 33519775 (-)
G1687068 NA non-coding downstream 67661 33463039 ~ 33463284 (-)
G1687044 NA non-coding downstream 123056 33407604 ~ 33407889 (-)
G1687038 NA non-coding downstream 142333 33388284 ~ 33388612 (-)
G1687032 NA non-coding downstream 169022 33361724 ~ 33361923 (-)
G1687143 NA non-coding upstream 90769 33625994 ~ 33626216 (-)
G1687159 NA non-coding upstream 104332 33639557 ~ 33639948 (-)
G1687164 NA non-coding upstream 107335 33642560 ~ 33642795 (-)
G1687183 NA non-coding upstream 118915 33654140 ~ 33654477 (-)
G1687385 NA non-coding upstream 250872 33786097 ~ 33787474 (-)
G1686887 NA other downstream 452918 33077810 ~ 33078027 (-)
LOC110499342 LOC106589762 other downstream 718091 32810995 ~ 32812999 (-)
G1684920 NA other downstream 2118101 31407594 ~ 31412844 (-)
G1684661 NA other downstream 2417259 31111555 ~ 31113686 (-)
LOC110499315 LOC106589727 other downstream 3984628 29541315 ~ 29571033 (-)
G1687007 LOC106589782 other upstream 8461 33531084 ~ 33544238 (-)
G1689130 NA other upstream 1723764 35258989 ~ 35259818 (-)
G1689131 NA other upstream 1724661 35259886 ~ 35260208 (-)
G1689461 NA other upstream 1942889 35478114 ~ 35480057 (-)
G1689556 NA other upstream 2108143 35643368 ~ 35643777 (-)

Expression


Co-expression Network