LOC110499360 (LOC106589782)


Basic Information

Item Value
gene id LOC110499360
gene name LOC106589782
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33524385 ~ 33544273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110499360
ACAAGAGGAAGAGGAGCCAAGATAGCTGTtctgaaagaggaagagaagcaGAAGAGTCAGAAGATGAAGGAGAAGATTGAGCAGATGAACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGGGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCATGAAGGAAAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGGGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAgttcagAGTCTGGGAGAAGATGCAGGAGATCATCAAACACACTCGTGTGATTCTGGACCCCAACACTGCatcctcctgtctctgtctgtctgatgatCTGACCAGTGTGAGTTGTAATGACCCAGAGCAGCAGCTCCCTGACAACCCAGAGAGATTCATGAAGTATGCAACTATTCTGGGCTCTAAGGGGTTCAGCTCAGGTAAACACAGCTGGGAGGTGGAGCTGGGGGATCATCCTATCTGGAACCTGGGAGTGGCTAAAGAGTCAACTGACAGGAAGGGGGAGGTGTGTATTTTACCAGAGTATGGAATCTGGTCTATACTGCAGAGGAGTGGTAAGTATACTAATGTAAAGGGAGAGACCCTCCTCCTGAAGAAGAAACCCCAGAGGATCAGAGTTCAGCTGGACTACGACCAGGGGGAGGTGTCCTTCTACAACTCCAAAGACATGACACTCATCTACACTCAAAGACACACTCACTGAGACTCTCTACCCGTACTTCACTTTTGGATCAGCTGGTGATGCCAAAAGCACTGGTGTACAGATCTGCCAATCAGAGGTGTCTCTGACAGTGATGTCATCCCAATgaggtgtgtgtgcgcgcgtttgtgtgtgcgtgcgtatgagAGAAAGAAACATGAGTCAACTATACTCATATTTTTCTTCTAAATGTGCCTCATCAGCAACTTGCAGCATTTTTCCACAAATTCCCTCCCCAGGCTCACCATCTAGTCAGTGATAAACTAATATGGGCAGGGTCGTAACTACAGACGAGGACACCTACAGTAGGTCCAGACCTCTGACATGTTTTCTAATGAAACACTCAGtgagggtctcaacttactgttcagagttagaatagtagCAAGGTGACATTTAATTACTTCCTGCAGTTCTCCTCTTGTTATATGTCACTCACTGACGTTCACTCAATCCGCCCATGTCAGTTAAAAATGTTTTGATTGGTGAATTAGTCTAGTTAATCTAGCCAGTTATCTAAACTTGTTGAAAACATGGCTGAATTACTGACTGGGAACGCAAGTTATGtccccaggggccctgacctctagggggccctgacctccagggggccccattgattttgtAGTCActttcactcagatatcatattaacatagCATCagtcattgcaaaatgtgtagaattgcaggaaattccaggggggggggggtgtcatcgACCTGGATACCTCAGCTCCACTTCGTCTAGATGTCATCGACCTGGATATCTCAGCTCCACTTCGTCTAGATGTCATCGACCTGATTATCTCAGCTCCACATCAACCAGATGTCATCGACCTGATTATCTCAGCTCCACATCAACCAGATGTCATCGACCTGATTATCTCAGCTCCACTTCGTCCAGATGTCATCGAGTCTCACCACAGTGGACAGTGTTGTATCGTGAACTGTGACGAACAACCCTGACATTATACTGGAGGAGGAAGAACATCATGTCAAAGTAAAGTGCATGCACAGGAATGGTGTCAACAAGTTCTACTGGCCAAGCCCAAGAGATGATATCAACTGGTAACGGGATGACCAGATTGTTTGTCTGATATCAGAGCCGCTGCCAGTGAACAAAAGATCAGTTCAAATTTGTCACTGTACCTGGAAGTATTTGAAGGAGCACCTGACTGTGTGAAGTGGcagatgtcaaatcaaatcaaatgtattggtcacatacacgtgtttagcagatgttattgcgggtgtagtgaaatgcttgtgcttctagctccgactgtgcagtaatatccaacaagtaatatctaacagtttcacaataTATACCCCAAAAAACACATAAATCTGAACTGGCTATGAGTGAAGAAGCTGTCAGTAACTAGAAAGCAATGGAGATTGTCTCAGAGATGATAAGAGATGGACACGACACAATAACATGGCAAAGACAAACACATCTGAAGATAAAGTGAAGAACAATAAAGGAAATATTCCATGAACATGTTTTACTGCAAACAACATGTTGGTATCAGTGTGGTTAGGAGAACAGTTTTAGTTTATGTTCAATGTTACTGTTTCTAATGTTCTAGTGGACATGTTTAATATATATGACAAAGTTGTGTTATGAAAGACTGGGCTTCATATTTTAGTCTTAAGCTTTGACCAATAACCCTCATTTAATTGTTCATATTAAA
>TU1929713
CCAGATGTCATCGACCTGATTATCTCAGCTCCACTTCGTCCAGATGTCATCGACCTGGATATCTCAGCTCCACTTCGTCCAGATGTCATCGACCTGGATATCTCAGCTCCACTTCGTCCAGATGTCATCGAGTCTCACCACAGTGGACAGTGTTGTATCGTGAACTGTGACGAACAACCCTGACATTATACTGGAGGAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110499360 False 2449 mRNA 0.44 5 33537234 33544273
TU1929713 True 201 lncRNA 0.50 3 33524385 33538069

Neighbor

gene id symbol gene type direction distance location
LOC110499358 LOC106589782 coding downstream 2009 33530945 ~ 33535225 (-)
LOC118942061 LOC106589782 coding downstream 16328 33517650 ~ 33520906 (-)
LOC118942062 LOC106589782 coding downstream 22623 33503010 ~ 33514611 (-)
LOC110499353 LOC106589782 coding downstream 37315 33489351 ~ 33499919 (-)
LOC110499355 LOC106589782 coding downstream 50976 33475694 ~ 33486258 (-)
LOC110499361 LOC106589781 coding upstream 1546 33545819 ~ 33578200 (-)
LOC110499535 NA coding upstream 305787 33850060 ~ 33938490 (-)
bag2 bag2 coding upstream 424815 33969088 ~ 33971824 (-)
znf451 znf451 coding upstream 427869 33972142 ~ 33983890 (-)
trnav-uac-22 NA coding upstream 588129 34132402 ~ 34132477 (-)
G1687007 LOC106589782 non-coding downstream 4318 33531084 ~ 33544238 (-)
G1687070 NA non-coding downstream 17459 33504882 ~ 33519775 (-)
G1687068 NA non-coding downstream 73950 33463039 ~ 33463284 (-)
G1687044 NA non-coding downstream 129345 33407604 ~ 33407889 (-)
G1687038 NA non-coding downstream 148622 33388284 ~ 33388612 (-)
G1687143 NA non-coding upstream 81721 33625994 ~ 33626216 (-)
G1687159 NA non-coding upstream 95284 33639557 ~ 33639948 (-)
G1687164 NA non-coding upstream 98287 33642560 ~ 33642795 (-)
G1687183 NA non-coding upstream 109867 33654140 ~ 33654477 (-)
G1687385 NA non-coding upstream 241824 33786097 ~ 33787474 (-)
G1686887 NA other downstream 459207 33077810 ~ 33078027 (-)
LOC110499342 LOC106589762 other downstream 724380 32810995 ~ 32812999 (-)
G1684920 NA other downstream 2124390 31407594 ~ 31412844 (-)
G1684661 NA other downstream 2423548 31111555 ~ 31113686 (-)
G1689130 NA other upstream 1714716 35258989 ~ 35259818 (-)
G1689131 NA other upstream 1715613 35259886 ~ 35260208 (-)
G1689461 NA other upstream 1933841 35478114 ~ 35480057 (-)
G1689556 NA other upstream 2099095 35643368 ~ 35643777 (-)
LOC110499416 dnah17 other upstream 2321427 35864651 ~ 35951415 (-)
LOC110499533 slit1 coding downstream 51784 33292275 ~ 33472601 (-)
G1687032 NA non-coding downstream 162462 33361724 ~ 33361923 (-)
LOC110499315 LOC106589727 other downstream 3978068 29541315 ~ 29571033 (-)

Expression


Co-expression Network