rab23 (LOC106589799)



Basic Information


Item Value
gene id rab23
gene name LOC106589799
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33949752 ~ 33958728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036956223.1
TTTTTGGGGTGGCAGATTTTTGTCTCGCCTAAGGCGGCAGAAAGTCGAGTACTGGCCCTGATGGTCACGATACAACCTGGCCACACACAGACTCAAGATCAGTTTAGATTAATTTATTTTACAGGAGCTGTAGTTCATAAACTGACCCAGCGAGTTGCAGTGAACTGCGCATCTGCTATCAGAAACCAAAAGCGTTTAAAGCAACCGGACTGCAGTTGTGGGAGGTGTTTTAAGTGATCCAGTGACAGCCCTCCTAAAGCAACACCAGACTGCTGCCTGGAAGTGTGAGGAAAGCCCAGCAACACGCAGCCATGTTGGAGGAGGACATGGAAGTGGCCAtcaaggtggtggtggtgggcaaCGGTGCGGTGGGGAAGTCTAGCATGATCCAGCGCTACTGCAAGGGCATCTTCACCAAGGACTACAAGAAGACCATCGGTGTGGACTTCCTGGAGAGACAGCTACTAGTGAATGATGAAGATGTGAGATTGATGTTGTGGGACACGGCAGGGCAGGAAGAGTTTGACGCCATCACCAAGGCCTACTACCGCGGTGCCCAGGCGTGTGTACTGGTCTTCTCCACCACCGACAGGGAATCGTTTGAGGCCATCGGCAGCTGGTGGGAGAAGGTGGAGATAGAGGTGGGAGACATCCCCACTGTCCTGGTGCAGAACAAGATTGACCTTCTAGATGACACGGTGATCAAAAATGAGGAGGCAGAAGGTCTGGCCAAGAAGCTCAAGTTAAGGTTTTACCGAACCTCCGTAAAGGAGGACCTCAATGTCAATGAAGTTTTTAAATACCTAGCAGATAAGTATCTGCAGCGACTGAAGCGGCAAACAGCAGAAGAGCCTGAGGTAGTCCATACAACTAGCAATAAAATTGGAGTTTTCAACACCACAAGTAGTAACTTATCTAGTCAGAACTCCAGCAACGGCCGAGAAGTCATCAGCTTGCGACCCAACAAACAGAGGACAAAGAGAACCAAAAACCCCTTTGGTAGCTGCAGCCTTCTTTAGAATCAATCCGTTCCCTACAATAATGTACGATTTGACTGCCGTGTGAGTGTAAGAAtctatacatttacatttgagcaTAACCTAGGTGTAGGTGTAGGTCTTAATTTGACccctcttttgttgctgagaatttcccTGCAAATGACCTTCATGATGGACATAAATTCACAAAAAATCTGCACGTGTAacatattaacagtattgcacttcaTGTAGCCTAATTTTGTCCAGCAAATAGTCTAACCACAGAACAAGCAACACTAAaagttcaaatcctgttgctgcaggattatttttgcTCAGACAATATTGGTCAAATGAAGATCTGACATCTGTAAATCTAATATGCACCTGAGTATTGTGAATACCATGCCTTTGAGCATCTTTACAGATCAAGTGCAGCCTTTGTTTCTCATGGATAGATGTATGAAATATAAAGCGACAGTAACAATAGTCCTCCTGGTGGCTGTAATGGGTACTACAATCCAACACAGACTATGTTGTAGCATGAATGTAATGCTTGAAGCAGATCTTTTGAGAAATAGTAGTTGGGCATGACAGGGTTCTCCCATTTACACCCTTCAACATGGTGCAGGGAAGGGTTACATTCTAGTTCACTAACAAGGTGTATTTGTATGTTCATATTGTGATTTTTATAGATTGCCATTTGTGCACTTGAATCTGTTTGTATTGTAAGAAATATACAGATTACTTTCTACCATATTTGTTCTAAAATATTAATGGAATATGGTTCAATatgctgagtgtacaaaacattaggaacaccttcc
>XM_021576451.2
TTTTGGGGTGGCAGATTTTTGTCTCGCCTAAGGCGGCAGAAAGTCGAGTACTGGCCCTGATGGTCACGATACAACCTGGCCACACACAGACTCAAGATCAGTTTAGATTAATTTATTTTACAGGAGCTGTAGTTCATAAACTGACCCAGCGAGTTGCAGTGAACTGCGCATCTGCTATCAGAAACCAAAAGCGTTTAAAGCAACCGGACTGCAGTTGTGGCAATTGTATTTTGTTTTCGTCTCGTGCTGTTTGTTGCCTGTTGCAGCTGCAAGAGAAAGACTGTCATGTAACTGGATGCCGGAGGTGTTTTAAGTGATCCAGTGACAGCCCTCCTAAAGCAACACCAGACTGCTGCCTGGAAGTGTGAGGAAAGCCCAGCAACACGCAGCCATGTTGGAGGAGGACATGGAAGTGGCCAtcaaggtggtggtggtgggcaaCGGTGCGGTGGGGAAGTCTAGCATGATCCAGCGCTACTGCAAGGGCATCTTCACCAAGGACTACAAGAAGACCATCGGTGTGGACTTCCTGGAGAGACAGCTACTAGTGAATGATGAAGATGTGAGATTGATGTTGTGGGACACGGCAGGGCAGGAAGAGTTTGACGCCATCACCAAGGCCTACTACCGCGGTGCCCAGGCGTGTGTACTGGTCTTCTCCACCACCGACAGGGAATCGTTTGAGGCCATCGGCAGCTGGTGGGAGAAGGTGGAGATAGAGGTGGGAGACATCCCCACTGTCCTGGTGCAGAACAAGATTGACCTTCTAGATGACACGGTGATCAAAAATGAGGAGGCAGAAGGTCTGGCCAAGAAGCTCAAGTTAAGGTTTTACCGAACCTCCGTAAAGGAGGACCTCAATGTCAATGAAGTTTTTAAATACCTAGCAGATAAGTATCTGCAGCGACTGAAGCGGCAAACAGCAGAAGAGCCTGAGGTAGTCCATACAACTAGCAATAAAATTGGAGTTTTCAACACCACAAGTAGTAACTTATCTAGTCAGAACTCCAGCAACGGCCGAGAAGTCATCAGCTTGCGACCCAACAAACAGAGGACAAAGAGAACCAAAAACCCCTTTGGTAGCTGCAGCCTTCTTTAGAATCAATCCGTTCCCTACAATAATGTACGATTTGACTGCCGTGTGAGTGTAAGAAtctatacatttacatttgagcaTAACCTAGGTGTAGGTGTAGGTCTTAATTTGACccctcttttgttgctgagaatttcccTGCAAATGACCTTCATGATGGACATAAATTCACAAAAAATCTGCACGTGTAacatattaacagtattgcacttcaTGTAGCCTAATTTTGTCCAGCAAATAGTCTAACCACAGAACAAGCAACACTAAaagttcaaatcctgttgctgcaggattatttttgcTCAGACAATATTGGTCAAATGAAGATCTGACATCTGTAAATCTAATATGCACCTGAGTATTGTGAATACCATGCCTTTGAGCATCTTTACAGATCAAGTGCAGCCTTTGTTTCTCATGGATAGATGTATGAAATATAAAGCGACAGTAACAATAGTCCTCCTGGTGGCTGTAATGGGTACTACAATCCAACACAGACTATGTTGTAGCATGAATGTAATGCTTGAAGCAGATCTTTTGAGAAATAGTAGTTGGGCATGACAGGGTTCTCCCATTTACACCCTTCAACATGGTGCAGGGAAGGGTTACATTCTAGTTCACTAACAAGGTGTATTTGTATGTTCATATTGTGATTTTTATAGATTGCCATTTGTGCACTTGAATCTGTTTGTATTGTAAGAAATATACAGATTACTTTCTACCATATTTGTTCTAAAATATTAATGGAATATGGTTCAATatgctgagtgtacaaaacattaggaacaccttcc
>XM_021576452.2
TTTTGGGGTGGCAGATTTTTGTCTCGCCTAAGGCGGCAGAAAGTCGAGTACTGGCCCTGATGGTCACGATACAACCTGGCCACACACAGACTCAAGATCAGTTTAGATTAATTTATTTTACAGGAGCTGTAGTTCATAAACTGACCCAGCGAGTTGCAGTGAACTGCGCATCTGCTATCAGAAACCAAAAGCGTTTAAAGCAACCGGACTGCAGTTGTGGCTGCAAGAGAAAGACTGTCATGTAACTGGATGCCGGAGGTGTTTTAAGTGATCCAGTGACAGCCCTCCTAAAGCAACACCAGACTGCTGCCTGGAAGTGTGAGGAAAGCCCAGCAACACGCAGCCATGTTGGAGGAGGACATGGAAGTGGCCAtcaaggtggtggtggtgggcaaCGGTGCGGTGGGGAAGTCTAGCATGATCCAGCGCTACTGCAAGGGCATCTTCACCAAGGACTACAAGAAGACCATCGGTGTGGACTTCCTGGAGAGACAGCTACTAGTGAATGATGAAGATGTGAGATTGATGTTGTGGGACACGGCAGGGCAGGAAGAGTTTGACGCCATCACCAAGGCCTACTACCGCGGTGCCCAGGCGTGTGTACTGGTCTTCTCCACCACCGACAGGGAATCGTTTGAGGCCATCGGCAGCTGGTGGGAGAAGGTGGAGATAGAGGTGGGAGACATCCCCACTGTCCTGGTGCAGAACAAGATTGACCTTCTAGATGACACGGTGATCAAAAATGAGGAGGCAGAAGGTCTGGCCAAGAAGCTCAAGTTAAGGTTTTACCGAACCTCCGTAAAGGAGGACCTCAATGTCAATGAAGTTTTTAAATACCTAGCAGATAAGTATCTGCAGCGACTGAAGCGGCAAACAGCAGAAGAGCCTGAGGTAGTCCATACAACTAGCAATAAAATTGGAGTTTTCAACACCACAAGTAGTAACTTATCTAGTCAGAACTCCAGCAACGGCCGAGAAGTCATCAGCTTGCGACCCAACAAACAGAGGACAAAGAGAACCAAAAACCCCTTTGGTAGCTGCAGCCTTCTTTAGAATCAATCCGTTCCCTACAATAATGTACGATTTGACTGCCGTGTGAGTGTAAGAAtctatacatttacatttgagcaTAACCTAGGTGTAGGTGTAGGTCTTAATTTGACccctcttttgttgctgagaatttcccTGCAAATGACCTTCATGATGGACATAAATTCACAAAAAATCTGCACGTGTAacatattaacagtattgcacttcaTGTAGCCTAATTTTGTCCAGCAAATAGTCTAACCACAGAACAAGCAACACTAAaagttcaaatcctgttgctgcaggattatttttgcTCAGACAATATTGGTCAAATGAAGATCTGACATCTGTAAATCTAATATGCACCTGAGTATTGTGAATACCATGCCTTTGAGCATCTTTACAGATCAAGTGCAGCCTTTGTTTCTCATGGATAGATGTATGAAATATAAAGCGACAGTAACAATAGTCCTCCTGGTGGCTGTAATGGGTACTACAATCCAACACAGACTATGTTGTAGCATGAATGTAATGCTTGAAGCAGATCTTTTGAGAAATAGTAGTTGGGCATGACAGGGTTCTCCCATTTACACCCTTCAACATGGTGCAGGGAAGGGTTACATTCTAGTTCACTAACAAGGTGTATTTGTATGTTCATATTGTGATTTTTATAGATTGCCATTTGTGCACTTGAATCTGTTTGTATTGTAAGAAATATACAGATTACTTTCTACCATATTTGTTCTAAAATATTAATGGAATATGGTTCAATatgctgagtgtacaaaacattaggaacaccttcc

Function


NR:

description
ras-related protein Rab-23-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06234 RAB23; Ras-related protein Rab-23

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036956223.1 False 1810 mRNA 0.44 7 33949752 33958728
XM_021576451.2 False 1890 mRNA 0.44 8 33949753 33958728
XM_021576452.2 True 1844 mRNA 0.44 8 33949753 33958728

Neighbor


gene id symbol gene type direction distance location
LOC110499362 LOC106589783 coding upstream 162238 33661321 ~ 33787514 (+)
LOC118942063 NA coding upstream 420273 33528620 ~ 33530380 (+)
LOC110499354 NA coding upstream 432309 33474940 ~ 33517443 (+)
LOC110499352 LOC106589767 coding upstream 687618 33216272 ~ 33262134 (+)
LOC118942060 LOC106589768 coding upstream 753585 33177293 ~ 33196167 (+)
LOC110499368 LOC106589788 coding downstream 25738 33984466 ~ 34178931 (+)
zmp:0000000760 LOC106589800 coding downstream 225352 34184080 ~ 34208986 (+)
col21a1 LOC106589801 coding downstream 267143 34225871 ~ 34271548 (+)
bmp5 LOC106589803 coding downstream 315139 34273867 ~ 34312150 (+)
hmgcll1 LOC106589805 coding downstream 388426 34347154 ~ 34379366 (+)
G1687496 NA non-coding upstream 53781 33895734 ~ 33895971 (+)
G1687463 NA non-coding upstream 80511 33868817 ~ 33869241 (+)
G1687456 NA non-coding upstream 86360 33863136 ~ 33863392 (+)
G1687439 NA non-coding upstream 94842 33854638 ~ 33854910 (+)
G1687212 NA non-coding upstream 259849 33689435 ~ 33689903 (+)
G1687545 bag2 non-coding downstream 8371 33967099 ~ 33970046 (+)
G1687581 NA non-coding downstream 61732 34020460 ~ 34020756 (+)
G1687627 NA non-coding downstream 252805 34211533 ~ 34211909 (+)
G1687628 NA non-coding downstream 253655 34212383 ~ 34212610 (+)
G1687674 NA non-coding downstream 366639 34325367 ~ 34325584 (+)
G1686317 LOC106589755 other upstream 1288104 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 4373194 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 4491831 29437357 ~ 29458499 (+)
G1681792 NA other upstream 5171343 28778006 ~ 28778409 (+)
G1687675 NA other downstream 367109 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 1422981 35381609 ~ 35384567 (+)
G1689347 NA other downstream 1722639 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 1742492 35701200 ~ 35702156 (+)
G1689671 NA other downstream 1922850 35881578 ~ 35881874 (+)

Expression



Co-expression Network