zmp:0000000760 (LOC106589800)


Basic Information

Item Value
gene id zmp:0000000760
gene name LOC106589800
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34184080 ~ 34208986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576467.2
CGTTGAAGTGTGTTTCAGTAGACGCAACGGGCCTATGGGAGATTTCAGATCCCCTGGGGACCGAAGGTAGAGTGGAGCACAAGGGTCAGGTCTTCCTGAGACCCACCACTGTCAGACTGAATGATCCTCCTGTTTAAGGCAAGGTTTGGCCTAGGGATGCCACTTTAAAATTGGTTACATCCTCACTGCGGGAACTGTAAAGGAACAGTCTGCAGTCCACATCGGGGCCTCTTTTTCAAGAATATGTGAGTGATTTTTACAATACTGTCTACATTCATCTACagGCACATATAATCCCTGACACATCACCTTTTCAAAATGCCAGCCTTCAAAGAGATGCTGGTTTTCCCAGTGCTTCTAGCTCTCGTTGGATTGACCAAATGCCAGGAGTTACCAAGTTATGACATGCTAGAGGAGTTCCGTGTATCTAAGTCCAGAGGGGTGAGGAAAGTGGTTGGATCTGAACCTGATTCAGTGGCCTACCGTGTGAACCCTGCCATCCACCTACGCAAAACCATGAGCGATGTGTACCCCGATGGCCTGCCCTCCGACTACTCCGTCATTGCCACATTTAAGGTGACGAAGGACACCGCCAAGAGGTCCTGGAACTTGTGGCAGGTCAGCGACCCCGATGGACGTGAACAGGTGGGCCTCCGTTTTCAGGGTGACACACACTCTCTGGACTTCTTCTACACCAGCCCCCATGGCACCCAGATGCTACGCACCTTCCACCGGGTGGACAAGCTGTTTGATGGAGAGTGGCACAAGCTGGCGCTGCAGGTCAAGGCCGATAAGGTCAAGTTGCTGGTGGACTGCGAGGAGGTGAGCGTGGAGCCCATCGGTGATCCTAGACCCGTCATCCGCCAGGGTTACACCTCTATCGTGAAGAGGGCTGTGGGAGATCACTCCGCCTCAGTAGACCTCCAGCAGATGGATGTGTCCTGTGATCCAGAGAAGGCCTACTCAGAAGGCTGCTGTGAGCTCTCCAGTGTGTGTGGCGGGCATGCTGAGATTGGCCTGACAGCAGGAAGGGCCACCTGTAAGTGTATGCACGGACAGCCTGGCAACCAGGGACCCCCAGGACCGAAGGGTCACAGAGGTCTGCCAGGCAACACAGGAGAGCCAGGAAGACTAGGCAACTGGGGAGGTATGGGGCAGACAGGTGACTATGGCCACGTTGGAGAGCCAGGCCCTAAGGGCATCGCAGGAATCAGCGGGAACAAGGGGATGAGAGGACTTCACGGCCTTGATGGCGACAGAGGTCCCAAAGGTCTGAAGGGATTACATGGCGCCGGGGGCTTCAAGGGAACTCAGGGGTCACCTGGAGAGCTGGGTGAGACCGGAGTACAAGGAGAAACGGGTGATCCAGGTCCACTTGGATATGAAGGAATTCCAGGATATACAGGAGTGAAGGGAGAAGAAGGGGCCTCCGGTGTTGAAGGACCTCCTGGGCCACAGGGAAAGCAGGGTGTTGTAGGTGATCCTGGAGAGTCAGGAGTTGCTGGGGAAAAGGGAAAACCTGGAACCCAAGGATCAAAAGGAAGATATGGCACCATTGGACAAAAGGGCATTATAGGAGATCCTGGTTTGCCCGGGAGAGATGGGGACATGGGAATAGAGGCTTACCAAGGACCCCAGGGCCCGGAGGGCAGAAACGGACAATTCGGAATAATGggagagaaaggaatgCTGGGGCCGGCAGGGGAGATGGGGCCTCAAGGCCAAACGGGCCCCAGAGGTTATAAAGGATCAGCAGCAAAGCCAGGAAGACCCGGATTTATTGGACCCCCAGGACCTGTCGGGCATGTGGGAGTAGCTGGACGGCCAGGCCCCAAGGGAGATATAGGCATTGAAGGGATCCAAGGTGTCAATGGTGAAACGggagaaaagggagaaaaGGGCCCCAAAGGCGAGGTTGGAGACGCGGGTGCACAGGGTCCCCACGGTGGTCGGGGGAAGCGTGGGCCAGGGGGCGAGCCTGGACGCACAGGCCCAGTCGGAACAAAGGGGGTCCGTGGCGATGGAGGACCAGTCGGATTTCAGGGGCCGCCAGGGCCACCGGGCCCAACCCTCTCCGCACAACACGTGATTGAGGTCTGCAAGAGAGTGGTGCTGGAACAGATGTCCACCTTTGCCAACTCGGTGAAGAGGACGTGTGCCGCCGTGTGCCCACTCTATGGAGACGTCCCCTTGGGTGCCCCCGGTCCCTCTGGACAAAAGGGACCCCCGGGACCTCCAGGTGGTGATGGTATTGCCGGTGTGAATGGAGAGATCGGACAACCAGGATTCTATGGGGAGGTAGGAGACGCAGGCCAACAAGGACAGCCAGGGGATCAAGGAGATCAAGGAGATAAGGGAGCAGAGGGCCATGGCCTACCTGGCTACATCGGAGACCAGGGACCAAAGGGCCAACGTGGAAGACCTGGCAGAGCCTTCAATGGCACACCAGGACAAGAGGGCGAGAGAGGCCATGTAGGCCGGCCTGGACTGAGAGGTCACCCAGGACTACGAGGAGTCCCAGGCGTGTGTCAGACCACTGGGTGCGCTCTGctaaacaacaacacaaccaacgGATCACCTCAGAATGCACCCCAGAGGTTGAGAAGACACCCATAGAGGCAAAGAGGACACTTTTGACCAAGCTGCATGGATGTATTaataaagggagagaggaggagagggggagatgtgtattgggagagagaagagattttTTGTTGATAAACGTATTCAAATCAAAGTCTAAATAAATGCTTAAATGTAAATATGCATCCAATCTCCACCCTGAATGACTGAGATATCCATTTGACTTTCTCAAATAAATCAGTTGTAGAAACTTGTGCTGTTGGCCTTAAAACAACACCCCATTCTCATGGTTCATTTGAAAAAGACACCAATAGCTACAGTATTATTTTTGTTAAAAATTATGAAAGTTTATTTGACACATTTTATTGAAACTGATCCTAGTTGTCTTCAGATATCCCTGTTCTTTATAATAAAAGTCCAAAAACGATTGCTAACTTGTTTTACTAAAACATTTGCTccactgtttattttttattaccaTATATTATTGAGCTGTGCAGAATATAAAATCAAGCGTACAAATCATAATTAAACAAATTTCAGCAAAGTGTTTAACACAATTCTGTCGAGTCATGCTACCTACCTAAATCCAAAAACACTCAAAACCTCCCTCAAAAGGCTTACAGGATACTTGCATAATAATTCCCTAAAACATGAACATTTATTCCACCTCAGTTTATGACAGCCTCTGTCATCAGTTACACCATTGTTTAGGGCCACTATTATGGCCAATATGCTGTAACCCAAAAGTTGCTGTTATTGCTAGCAGTTACAGTTGGCCAACAGTTACTCTTTTGGCTTGCAGCTATTACTAGCCAATGGTTACTATTATGGCTAGCAGCATGCTGTAAAGGTAAATGTCTTTAATAACAGTTTGTGTCAGACAGTGAAACATCAGTTGCCATAAGCTGACATTAACTGTGAAATGATGATGTTATTTCATTATTATGACAATATTTTGTATGCCTTGTTTCTAGAGGGTTTAGGTGTTATCCAGAAGGCACAATGCTTTTTTGTTATGAAGTAACCAACTAAATGACCTATTGTAGTGGAAAAATCTGGAGCAAAAATGTGAAGCATAAAGAACAGTACACATTGTG
>XM_021576465.2
GTTGAAGTGTGTTTCAGTAGACGCAACGGGCCTATGGGAGATTTCAGATCCCCTGGGGACCGAAGGTAGAGTGGAGCACAAGGGTCAGGTCTTCCTGAGACCCACCACTGTCAGACTGAATGATCCTCCTGTTTAAGGCAAGGTTTGGCCTAGGGATGCCACTTTAAAATTGGTTACATCCTCACTGCGGGAACTGTAAAGGAACAGTCTGCAGTCCACATCGGGGCCTCTTTTTCAAGAATATGCACATATAATCCCTGACACATCACCTTTTCAAAATGCCAGCCTTCAAAGAGATGCTGGTTTTCCCAGTGCTTCTAGCTCTCGTTGGATTGACCAAATGCCAGGAGTTACCAAGTTATGACATGCTAGAGGAGTTCCGTGTATCTAAGTCCAGAGGGGTGAGGAAAGTGGTTGGATCTGAACCTGATTCAGTGGCCTACCGTGTGAACCCTGCCATCCACCTACGCAAAACCATGAGCGATGTGTACCCCGATGGCCTGCCCTCCGACTACTCCGTCATTGCCACATTTAAGGTGACGAAGGACACCGCCAAGAGGTCCTGGAACTTGTGGCAGGTCAGCGACCCCGATGGACGTGAACAGGTGGGCCTCCGTTTTCAGGGTGACACACACTCTCTGGACTTCTTCTACACCAGCCCCCATGGCACCCAGATGCTACGCACCTTCCACCGGGTGGACAAGCTGTTTGATGGAGAGTGGCACAAGCTGGCGCTGCAGGTCAAGGCCGATAAGGTCAAGTTGCTGGTGGACTGCGAGGAGGTGAGCGTGGAGCCCATCGGTGATCCTAGACCCGTCATCCGCCAGGGTTACACCTCTATCGTGAAGAGGGCTGTGGGAGATCACTCCGCCTCAGTAGACCTCCAGCAGATGGATGTGTCCTGTGATCCAGAGAAGGCCTACTCAGAAGGCTGCTGTGAGCTCTCCAGTGTGTGTGGCGGGCATGCTGAGATTGGCCTGACAGCAGGAAGGGCCACCTGTAAGTGTATGCACGGACAGCCTGGCAACCAGGGACCCCCAGGACCGAAGGGTCACAGAGGTCTGCCAGGCAACACAGGAGAGCCAGGAAGACTAGGCAACTGGGGAGGTATGGGGCAGACAGGTGACTATGGCCACGTTGGAGAGCCAGGCCCTAAGGGCATCGCAGGAATCAGCGGGAACAAGGGGATGAGAGGACTTCACGGCCTTGATGGCGACAGAGGTCCCAAAGGTCTGAAGGGATTACATGGCGCCGGGGGCTTCAAGGGAACTCAGGGGTCACCTGGAGAGCTGGGTGAGACCGGAGTACAAGGAGAAACGGGTGATCCAGGTCCACTTGGATATGAAGGAATTCCAGGATATACAGGAGTGAAGGGAGAAGAAGGGGCCTCCGGTGTTGAAGGACCTCCTGGGCCACAGGGAAAGCAGGGTGTTGTAGGTGATCCTGGAGAGTCAGGAGTTGCTGGGGAAAAGGGAAAACCTGGAACCCAAGGATCAAAAGGAAGATATGGCACCATTGGACAAAAGGGCATTATAGGAGATCCTGGTTTGCCCGGGAGAGATGGGGACATGGGAATAGAGGCTTACCAAGGACCCCAGGGCCCGGAGGGCAGAAACGGACAATTCGGAATAATGggagagaaaggaatgCTGGGGCCGGCAGGGGAGATGGGGCCTCAAGGCCAAACGGGCCCCAGAGGTTATAAAGGATCAGCAGCAAAGCCAGGAAGACCCGGATTTATTGGACCCCCAGGACCTGTCGGGCATGTGGGAGTAGCTGGACGGCCAGGCCCCAAGGGAGATATAGGCATTGAAGGGATCCAAGGTGTCAATGGTGAAACGggagaaaagggagaaaaGGGCCCCAAAGGCGAGGTTGGAGACGCGGGTGCACAGGGTCCCCACGGTGGTCGGGGGAAGCGTGGGCCAGGGGGCGAGCCTGGACGCACAGGCCCAGTCGGAACAAAGGGGGTCCGTGGCGATGGAGGACCAGTCGGATTTCAGGGGCCGCCAGGGCCACCGGGCCCAACCCTCTCCGCACAACACGTGATTGAGGTCTGCAAGAGAGTGGTGCTGGAACAGATGTCCACCTTTGCCAACTCGGTGAAGAGGACGTGTGCCGCCGTGTGCCCACTCTATGGAGACGTCCCCTTGGGTGCCCCCGGTCCCTCTGGACAAAAGGGACCCCCGGGACCTCCAGGTGGTGATGGTATTGCCGGTGTGAATGGAGAGATCGGACAACCAGGATTCTATGGGGAGGTAGGAGACGCAGGCCAACAAGGACAGCCAGGGGATCAAGGAGATCAAGGAGATAAGGGAGCAGAGGGCCATGGCCTACCTGGCTACATCGGAGACCAGGGACCAAAGGGCCAACGTGGAAGACCTGGCAGAGCCTTCAATGGCACACCAGGACAAGAGGGCGAGAGAGGCCATGTAGGCCGGCCTGGACTGAGAGGTCACCCAGGACTACGAGGAGTCCCAGGCGTGTGTCAGACCACTGGGTGCGCTCTGctaaacaacaacacaaccaacgGATCACCTCAGAATGCACCCCAGAGGTTGAGAAGACACCCATAGAGGCAAAGAGGACACTTTTGACCAAGCTGCATGGATGTATTaataaagggagagaggaggagagggggagatgtgtattgggagagagaagagattttTTGTTGATAAACGTATTCAAATCAAAGTCTAAATAAATGCTTAAATGTAAATATGCATCCAATCTCCACCCTGAATGACTGAGATATCCATTTGACTTTCTCAAATAAATCAGTTGTAGAAACTTGTGCTGTTGGCCTTAAAACAACACCCCATTCTCATGGTTCATTTGAAAAAGACACCAATAGCTACAGTATTATTTTTGTTAAAAATTATGAAAGTTTATTTGACACATTTTATTGAAACTGATCCTAGTTGTCTTCAGATATCCCTGTTCTTTATAATAAAAGTCCAAAAACGATTGCTAACTTGTTTTACTAAAACATTTGCTccactgtttattttttattaccaTATATTATTGAGCTGTGCAGAATATAAAATCAAGCGTACAAATCATAATTAAACAAATTTCAGCAAAGTGTTTAACACAATTCTGTCGAGTCATGCTACCTACCTAAATCCAAAAACACTCAAAACCTCCCTCAAAAGGCTTACAGGATACTTGCATAATAATTCCCTAAAACATGAACATTTATTCCACCTCAGTTTATGACAGCCTCTGTCATCAGTTACACCATTGTTTAGGGCCACTATTATGGCCAATATGCTGTAACCCAAAAGTTGCTGTTATTGCTAGCAGTTACAGTTGGCCAACAGTTACTCTTTTGGCTTGCAGCTATTACTAGCCAATGGTTACTATTATGGCTAGCAGCATGCTGTAAAGGTAAATGTCTTTAATAACAGTTTGTGTCAGACAGTGAAACATCAGTTGCCATAAGCTGACATTAACTGTGAAATGATGATGTTATTTCATTATTATGACAATATTTTGTATGCCTTGTTTCTAGAGGGTTTAGGTGTTATCCAGAAGGCACAATGCTTTTTTGTTATGAAGTAACCAACTAAATGACCTATTGTAGTGGAAAAATCTGGAGCAAAAATGTGAAGCATAAAGAACAGTACACATTGTG

Function

NR:

description
collagen alpha-1(IX) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576467.2 False 3686 mRNA 0.50 27 34184080 34208986
XM_021576465.2 True 3646 mRNA 0.51 27 34184081 34208986

Neighbor

gene id symbol gene type direction distance location
LOC110499368 LOC106589788 coding upstream 5149 33984466 ~ 34178931 (+)
rab23 LOC106589799 coding upstream 225352 33949752 ~ 33958728 (+)
LOC110499362 LOC106589783 coding upstream 396566 33661321 ~ 33787514 (+)
LOC118942063 NA coding upstream 654601 33528620 ~ 33530380 (+)
LOC110499354 NA coding upstream 666637 33474940 ~ 33517443 (+)
col21a1 LOC106589801 coding downstream 16885 34225871 ~ 34271548 (+)
bmp5 LOC106589803 coding downstream 64881 34273867 ~ 34312150 (+)
hmgcll1 LOC106589805 coding downstream 138168 34347154 ~ 34379366 (+)
LOC118942064 NA coding downstream 290045 34499031 ~ 34503666 (+)
klhl31 LOC106589810 coding downstream 360069 34569055 ~ 34573880 (+)
G1687581 NA non-coding upstream 163324 34020460 ~ 34020756 (+)
G1687545 bag2 non-coding upstream 214034 33967099 ~ 33970046 (+)
G1687496 NA non-coding upstream 288109 33895734 ~ 33895971 (+)
G1687463 NA non-coding upstream 314839 33868817 ~ 33869241 (+)
G1687456 NA non-coding upstream 320688 33863136 ~ 33863392 (+)
G1687627 NA non-coding downstream 2547 34211533 ~ 34211909 (+)
G1687628 NA non-coding downstream 3397 34212383 ~ 34212610 (+)
G1687674 NA non-coding downstream 116381 34325367 ~ 34325584 (+)
G1687676 NA non-coding downstream 117350 34326336 ~ 34326687 (+)
G1687679 NA non-coding downstream 119956 34328942 ~ 34329146 (+)
LOC118942060 LOC106589768 other upstream 998804 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 1522432 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 4607522 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 4726159 29437357 ~ 29458499 (+)
G1681792 NA other upstream 5405671 28778006 ~ 28778409 (+)
G1687675 NA other downstream 116851 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 1172723 35381609 ~ 35384567 (+)
G1689347 NA other downstream 1472381 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 1492234 35701200 ~ 35702156 (+)
G1689671 NA other downstream 1672592 35881578 ~ 35881874 (+)

Expression


Co-expression Network