Gene
RNA
| Item | Value |
|---|---|
| gene id | col21a1 |
| gene name | LOC106589801 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 34225871 ~ 34271548 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| collagen alpha-1(XXI) chain-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036956230.1 | False | 2880 | mRNA | 0.52 | 28 | 34225871 | 34268321 |
| XM_036956227.1 | False | 5109 | mRNA | 0.46 | 30 | 34225873 | 34271548 |
| XM_036956228.1 | False | 5100 | mRNA | 0.46 | 29 | 34225873 | 34271548 |
| XM_036956229.1 | False | 4978 | mRNA | 0.46 | 29 | 34225873 | 34271548 |
| XM_036956231.1 | False | 4415 | mRNA | 0.46 | 28 | 34225875 | 34271548 |
| XM_036956233.1 | False | 4345 | mRNA | 0.47 | 28 | 34225875 | 34271548 |
| XM_036956234.1 | False | 4249 | mRNA | 0.46 | 27 | 34225875 | 34271548 |
| XM_021576468.2 | False | 4973 | mRNA | 0.46 | 30 | 34226134 | 34271548 |
| XM_036956232.1 | True | 4457 | mRNA | 0.46 | 29 | 34232259 | 34271548 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| zmp:0000000760 | LOC106589800 | coding | upstream | 16885 | 34184080 ~ 34208986 (+) |
| LOC110499368 | LOC106589788 | coding | upstream | 46940 | 33984466 ~ 34178931 (+) |
| rab23 | LOC106589799 | coding | upstream | 267143 | 33949752 ~ 33958728 (+) |
| LOC110499362 | LOC106589783 | coding | upstream | 438357 | 33661321 ~ 33787514 (+) |
| LOC118942063 | NA | coding | upstream | 696392 | 33528620 ~ 33530380 (+) |
| bmp5 | LOC106589803 | coding | downstream | 2319 | 34273867 ~ 34312150 (+) |
| hmgcll1 | LOC106589805 | coding | downstream | 75606 | 34347154 ~ 34379366 (+) |
| LOC118942064 | NA | coding | downstream | 227483 | 34499031 ~ 34503666 (+) |
| klhl31 | LOC106589810 | coding | downstream | 297507 | 34569055 ~ 34573880 (+) |
| gclc | gsh1 | coding | downstream | 311768 | 34583316 ~ 34591320 (+) |
| G1687628 | NA | non-coding | upstream | 13261 | 34212383 ~ 34212610 (+) |
| G1687627 | NA | non-coding | upstream | 13962 | 34211533 ~ 34211909 (+) |
| G1687581 | NA | non-coding | upstream | 205115 | 34020460 ~ 34020756 (+) |
| G1687545 | bag2 | non-coding | upstream | 255825 | 33967099 ~ 33970046 (+) |
| G1687496 | NA | non-coding | upstream | 329900 | 33895734 ~ 33895971 (+) |
| G1687674 | NA | non-coding | downstream | 53819 | 34325367 ~ 34325584 (+) |
| G1687676 | NA | non-coding | downstream | 54788 | 34326336 ~ 34326687 (+) |
| G1687679 | NA | non-coding | downstream | 57394 | 34328942 ~ 34329146 (+) |
| G1687681 | NA | non-coding | downstream | 60271 | 34331819 ~ 34332148 (+) |
| LOC118942060 | LOC106589768 | other | upstream | 1040595 | 33177293 ~ 33196167 (+) |
| G1686317 | LOC106589755 | other | upstream | 1564223 | 32654354 ~ 32661648 (+) |
| LOC110499316 | LOC106589729 | other | upstream | 4649313 | 29572397 ~ 29588171 (+) |
| lhcgr | lhr | other | upstream | 4767950 | 29437357 ~ 29458499 (+) |
| G1681792 | NA | other | upstream | 5447462 | 28778006 ~ 28778409 (+) |
| G1687675 | NA | other | downstream | 54289 | 34325837 ~ 34326254 (+) |
| LOC110499396 | LOC106589821 | other | downstream | 1110161 | 35381609 ~ 35384567 (+) |
| G1689347 | NA | other | downstream | 1409819 | 35681367 ~ 35682437 (+) |
| LOC118942012 | LOC106589797 | other | downstream | 1429672 | 35701200 ~ 35702156 (+) |
| G1689671 | NA | other | downstream | 1610030 | 35881578 ~ 35881874 (+) |
