bmp5 (LOC106589803)


Basic Information

Item Value
gene id bmp5
gene name LOC106589803
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34273867 ~ 34312150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576472.2
CTAGAGGTGGATGCAAAAACGTGTTCCTGGATGGGAAGGACTCATTGGATAGACAACAAGCTTCAACACATTTTCCCAAAAACTTTACGCGCCGTGGCAACTAGTGGCAACGGGTGCtattactgtatatagtctaCTGATTTCCACTCAAAGGGGCTTTTATGTTCCTATTCAATGAAAGCGTTGGGCTTTTTCGACTTTTATGGGCGTACCTGCATGTTATTGTGTAGGTGCGATAGAAAGTAACAATTCCACATGTGATGCGCCTATTTTGAAACATGTGACAGTGGGACATTGGATTTAAGCGGAGCACTGGAAAGAACTTCAACAAAAACGTGTTTATTTTTGCCGAAGAGAAGGGACAGCTCCACAGCATACGTTGATGTGAGACTTACAAGAACATCATTGCAGGCAGACGTTCTAAGTGTTGTGACATAATAACCTTTATGTTATGCtggatgtaaaaaaaacattcagAAATTGTGATATTTGCATTGAAATGGAGATCATCTTTATACATTGGTAACAACTGTATACTTGTGTAACATCATCATCAAAAACATAATTGTGCAAGATGAGAGCTTTCATTTCTTTGAACCGGCCAACGTTTGGACTTTTCTGGAGCTGCTTGAGTTTTCTATACTGCGCTCATTGTGGTTTAGGCGACAACCATGTGCATTCTAGTTTTATTTACAGGAGATTGCGTAACCATGAAcggagagagattcagagagagattcTCTCTATTTTGGGTTTACCACATCGTCCAAGGCCCTTTTCTCCAGGAAAACAAGCATCTTCAGCACCCCTGTTCATGCTTGACCTGTACAATGCCATGACTACTGAGGAGGAAGAAGGGTTGAGAACACAAGAGGTTACAGGGAAAGGATTCAGCGCGAAGGCTCATGGAAACTCGCGTAAAGGGTACCACGGCTCTCCGCAGGGACACTCTCGTGTTTCGCAACCTTACCGCGCGGCTCCTCTGACGAGCCAAAGCCCTCCACTCACTACATCTCACGACACCAACTTTCTAAACGATGCTGATATGGTTATGAGCTTTGTCAACTTAGtggagaaagacaaagatTTCTCCCATCAGCGAAGACACTACAAGGAGTTCCGTTTTGACTTGACTCAGATCCCAGAGGGGGAGGCGGTGACTGCTGCTGAGTTTCGGATCTACAAAGATGGCAGTCCTCCTCGCTATGAGAACGTTACCCTGAAGGTCACCATCCACCAGGTCATCAAGGAATATCAAAACAAGGATGCAGAGACGTTCTTGTTGGATTCCAAAAAGATCAAGGCCTCTGATGGGGGTTGGCTGGTCTTTGATATCACAGCTACCAGTAACCACTGGGTGCTGAATCCACTGCAGAACATGGGTCTGCAGCTCTCTGTTGAAACTATGGATGGACGGAGTATCAACATGAAGTCTGCTGGCATCGTTGGTAGGAATGGACCACAATCCAAACAGCCGTTCCTAGTCTCATTCTTCAAGGCCAGTGAGGTATTGCTGCGCTCTGTCAGGGCCGCTGGTGGAAAGAAAAAGAATCACAATCGTAACAAATCAGGTGGTCAACAGGAATCATCACAGGCACCGAAAAGTGGAGATCATAACACCAGTGAACAGAAACAAGCCTGCAAGAAGCATGAACTTTACGTCAGCTTCCGAGACTTAGGATGGCAGGACTGGATTATTGCACCTGAAGGCTATGCTGCTTTTTACTGCGATGGGGAATGTTCTTTTCCACTCAATGCACATATGAATGCGACAAATCACGCCATTGTGCAAACTCTGGTCCATCTGATGTTCCCTGACAATGTGCCAAAGCCATGCTGTGCACCGACCAAGCTGAACGCTATATCTGTGCTTTACTTTGATGACAGCTCAAATGTCATCCTCAAGAAATACAGAAACATGGTTGTCAGGTCATGTGGTTGCCATTAACGGGCAAGCAGCGTTATATTTCACATATGTGGTATTGCTGAAAAAGTACAATATCGATTTAGATAGGTTGGAGGTGTGATGTACAGTATTATGTATATATTAGTtgtatttacttatttatttccCCTATTTTTGTGGTAACACTCAACATTGTACAATGAATATGACTTAGAATATGAAATTAGAGTGCATGTATATTAGACATCACTTGGCACTCTCTCCTATAGGCCATATCAAACATATACAGATACGTTGTtatagttgtagttgttgtacaTCTTAGCAAAAGGAAACTTCTCGATCCAATATGGATCTATTGGACGTATTGTTATTGAATACGGTCCAACTAAGGATACACATTTTACCAAcatggttcttcggctgtccccataggagaaccatttgaagaGACCCTTTTCTTcccaggtagaaccttttggggttcCATATAGAAGCCTTTCCACATACggttctacattgaacccaaaaTGGTGCTTCTATGGGGACGGCGGAAGAACCGTTTTGGAACCccgttttctaagagtgtatagcaCTGTTTTTTAAACTGTTACATTACATTTCATTTTCAAACCATTGTTTTAAACCATTCTAACCACTCCAAAAAGATTTACAAGATGCCGCTACAGTAAAATGAGGTAAAATCTTATGACACAGCAGTTGAAAATAGTTTGCGTAGCTACAGCATCTTACCTAGAAATAGTGTCAATTATTGCATCGACATTGTATTATGAAGCACATTATAACCTCTACTAGcctatgcaacttgcaaaaaaatgtatttgatttatcCATCAGATGTGTTAAAGCAGAATCCGTATTGATGTCGTTGACTGAGTAAGAGCCTGGCACAACATAAATCACATTAAAGGTATGACATAAAAGAGCAAAGGAAGTATTTCAAATAGGTCCCCTTGAATAACACTCTGGAGTTTTTCCTCCAGGCTTGAAGTTAATCGTATTTACACTGTGCACAGGCTTCAGTCTATCATGAAAATGGGTTTGGAAAAACGTGTGGTTGTTTATACGGTATCCTTAGACTTCTGGctataaaatgtatgtatatatcatGTTTTATATCAAATAAGTTCTGCTGAAAGGTACTTCCTCTATGCCAAAGTATCCCATAGCTACATTCTGTTGAATGCATATTTCCAGAGCATTCACTGAAAAAACATGAGGACTGGCATGCTATATTCTCAGACCCTTGAAATGTCATAGTTCAATAACAGTAGGAACATATGAAAATTAGGCAAAAGTTGTGCAGTAGCTCTCTTAAAAGTACTTTATGGCCAgtatatattttcatattttacaTATTCAATACGTAATGGATGAAACATCCCTAACGTGCTGACTAGACCGGCCACGTTGTGTGCGCgggtgttgcaaaataaatgtacacatcaTGTACacgttattcaatcatttcatccaaactgctTGCATGTGTCAACGATCGTCTGCATAGCCAGAACTTGGTTCcatgtcctgcctctcccatctactCTTTTGTTTTCGTGACCATACtaacccacatgggtgattgaataATTAACAAGGAGAGATAAATCAAAGAAAACTGACAAACTGACAACAaaattaattgtcggagtagaggacacACAATTTTGTATGACTCAAAATGggacaaaattctacaaagatccagCAAAAAAATAGGACCATTTGGCATTTCAGATAAAATAGCAAGCCAATGTTTatctcccaggacaaattagctagcaacagcaagctagctaaatgtccgTGAATGTTTCATTTGTGTTTCAActtgtccccaaatgaatatagttggttcacagttggttttggtattttaacctgcgtgtcatgaaCGCATATGGCGGAGATAAACAAAATCTAAATGCACAGGATGGCGCACGCGGATGCATGCTTGGGACAGGTTTGGTCAAGGTGTGAGAAAATACATTGTTTGCCCAATTGTGGTTATATCactgttatttttgtattattattgatGTTATATTATTATTGTCGTGTTGTTATGCTTCATAGTCATTTGAGTAATATATGTTGGGGAAAAATACAGGTTACTGTATTGTTAGTGTTGTTTACATATTATTAAATGATCTTTTTGAAAA

Function

NR:

description
bone morphogenetic protein 5-like isoform X1

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04663 BMP5; bone morphogenetic protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576472.2 True 4092 mRNA 0.40 7 34273867 34312150

Neighbor

gene id symbol gene type direction distance location
col21a1 LOC106589801 coding upstream 2319 34225871 ~ 34271548 (+)
zmp:0000000760 LOC106589800 coding upstream 64881 34184080 ~ 34208986 (+)
LOC110499368 LOC106589788 coding upstream 94936 33984466 ~ 34178931 (+)
rab23 LOC106589799 coding upstream 315139 33949752 ~ 33958728 (+)
LOC110499362 LOC106589783 coding upstream 486353 33661321 ~ 33787514 (+)
hmgcll1 LOC106589805 coding downstream 35004 34347154 ~ 34379366 (+)
LOC118942064 NA coding downstream 186881 34499031 ~ 34503666 (+)
klhl31 LOC106589810 coding downstream 256905 34569055 ~ 34573880 (+)
gclc gsh1 coding downstream 271166 34583316 ~ 34591320 (+)
elovl5 LOC100192340 coding downstream 282807 34594957 ~ 34606103 (+)
G1687628 NA non-coding upstream 61257 34212383 ~ 34212610 (+)
G1687627 NA non-coding upstream 61958 34211533 ~ 34211909 (+)
G1687581 NA non-coding upstream 253111 34020460 ~ 34020756 (+)
G1687545 bag2 non-coding upstream 303821 33967099 ~ 33970046 (+)
G1687496 NA non-coding upstream 377896 33895734 ~ 33895971 (+)
G1687674 NA non-coding downstream 13217 34325367 ~ 34325584 (+)
G1687676 NA non-coding downstream 14186 34326336 ~ 34326687 (+)
G1687679 NA non-coding downstream 16792 34328942 ~ 34329146 (+)
G1687681 NA non-coding downstream 19669 34331819 ~ 34332148 (+)
LOC118942060 LOC106589768 other upstream 1088591 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 1612219 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 4697309 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 4815946 29437357 ~ 29458499 (+)
G1681792 NA other upstream 5495458 28778006 ~ 28778409 (+)
G1687675 NA other downstream 13687 34325837 ~ 34326254 (+)
LOC110499396 LOC106589821 other downstream 1069559 35381609 ~ 35384567 (+)
G1689347 NA other downstream 1369217 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 1389070 35701200 ~ 35702156 (+)
G1689671 NA other downstream 1569428 35881578 ~ 35881874 (+)

Expression


Co-expression Network