hmgcll1 (LOC106589805)


Basic Information

Item Value
gene id hmgcll1
gene name LOC106589805
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34347154 ~ 34379366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576477.2
CTCAAAGCCAGCTACTGCTCAGTAGCACGAACATCCAAATCTGTTGagaaatgtcatacatgatggtcCTTTGGGGACAGTGACCCCAATGCACAGGTCAGGGACTTTTGTAACCAAAAACCAAAGGGTGCTAGGCAATGGGACTACTGCAAAGTAATCTTTAACACACATGCTGTCTCTGAGGGGTGCTATGGAAAGTTGGACACAGCCGGTCGACCTTCCTGAAAACTATAAGTTGAGCGTAAAGATCCATCAATGCGGGTGTCGGAGCCAGAGGATCCTGGGGGAGCTCTACAGGCCAAACGGGAGCGTTTCGGATGGGCAACATCCCCACCTCAGTGAAGCACTGCCTGAGCTATGAACAACTCATCCAGGATTATCCGTGGCTAGGAAGCCGGCTGCAGGAGGAGAAGTGCACTTTAACACGTGAATTTCCAGAGTATGTTAAAATGATTGAAGTTGGACCAAGAGACGGACTTCAAAATGAAAAGGAAATGGTTCCGACAAGAGTCAAAATCCAGCTGATAAACATGCTCTCGGAAACAGGCCTGCCTGTGATCGAGGCCACCAGCTTTGTGTCTTCAAAGTGGGTACCACAGATGGCGGACCACACTGAAGTGCTTCAAGCCATCCACAGATCTTCTCATGCTCGTTATCCTGTACTGACACCCAACATGCACGGCTTTCAGGATGCTGTTGCAGCTGGTGCTACTGAAGTGGCCGTGTTTGGGTCTGCCTCTGAGACCTTCAgtcaaaaaaatataaattgcTCTATTGATGACAGCATGCTGAGGTTCGAGGAAGTCATTTGCACTGCTAAACAACAACAGATTCCAGTCCGTGGATATGTTTCTTGTGCACTAGGATGTCCATATGAGGGACCCATTGAACCCACTAAAGTTGCAGAGGTGGTAAAGCGGTTGTATGAACTGGGCTGCTATGAGGTGTCTCTGGGGGATACTATCGGCGTGGGCACCCCAGGCTCCATGGCCAAGATGCTGCAATACGTCATGAAAGAGGTACCCAGCAGCGCTCTGGCCGTTCACTGCCACGACACCTACGGCCAGGCTCTGGCCAACATCCTAACTGCACTGCAGATGGGGATTTGTGCGGTGGACTCATCTGTAGCAGGTCTGGGTGGGTGCCCATATGCCCAGGGAGCCTCTGGTAACGTGTCAACAGAAGATGTTCTCTATATGCTCCATGGCATGGGCATTAAAACTGGAGTCGATCTCTCCAAGGTAATAGAGGCAGGTGATTTCATCTGCAAAGCCTTAAATCGCAAGACCAACTCCAAGGTAGCCCAAGCAAGAAGCAAGTCCTCATGATTAATCTGTGCATTGATACAAGAAGAAGATAAAGACCTTTCCCTTTAGCACAGTGTTTTGTCGTGTTGATGCTGCATATAGATAGCCCATGATTCTATACAAAGTGCAATATACATACTTTTTTTAAACCACAATTGATGGCCATTTAGCAGAGGCACTTTATTAAAACGTTGTTGGATAAGGCCTACTTAAATTCAAGAAATAACTGAACTTTTTTTAACCAAAAAACCTCTTCCAGTTATCACGTATAGtctgtctggtaggaggtgaaagATAGAGATGACTCCTCACTAAGTTGTGAAAGTTATTCATGGTGTTTCTGTGGGGGTCTCTTCCCATTCATTTCCAGCTCAGCAGGAGAGTCCTGCTGGATTTTAAACCAGTGAGTGTCGATCATTGTCTccctcaaaatgtatttgtctccCTCAAAACGTATTTTCAAGTCCTTTGCTCTAGTAACATGGAAGTCTGCCTGTCTCCACATGTAAAATATTGATTTGTTTTTTCTCTCTTCAAAGCAAATGTTATTTGTCAGGTGCCAAATAAAACCGatatagacttta
>XM_036956235.1
ccttTATtaatctctctgtgtttcttcctccctcttgctgactctatcctctctcccatCCATTCCCTGATAGGGATGCGGTTGCCATGGCAACTGATGAGTCACTGCCAGCTCTCTGCTTTCAGCTGTCGTCCTCTGATGTGATTCTTTCAGTGAGGGGGGCAGCAAGGGCCTCGGTCTCCACCCTGTCTGCTTCATGAGCATATTGATCAGAGAACTCCACCATGTGCATTTGTTGCAGTTGAGCGTAAAGATCCATCAATGCGGGTGTCGGAGCCAGAGGATCCTGGGGGAGCTCTACAGGCCAAACGGGAGCGTTTCGGATGGGCAACATCCCCACCTCAGTGAAGCACTGCCTGAGCTATGAACAACTCATCCAGGATTATCCGTGGCTAGGAAGCCGGCTGCAGGAGGAGAAGACAAAGTGCACAGTTGGTCATGAACGGATGCCAGGACCAACAAGAAAGAGCAAAGCTTCTCAGGAAAGACCTCAGAATAAAAGTACTTGTGTGataaggaggaccgagcactcccccattctcatcgacagggctgtagtggagcaggttgagagcttcaagttccttggtgtccacatcaccaacaaactagaatggtccaaacacaacaggacagttgtgaagagggcacgacaaagcctattccccctcaggaaactaaaaagatttggcatgggtcctgagatcctcaaaaggttctacagctggagcatgactggttgcatcactgcctggtacggcaattgctcagcctccgaccgcaagacactacagagggtagtgcgtactgcccagcacatcactggggctaagctgcctgccatccaggacctctataccaggcggtgtcagaggaaggccctaaaaattgtcaaagaccccagccaccccagtcatagactgttctctctactaccgcatggcaagcagtaccagagtgccaagtctaggacaaaaaggcttctcaacagtttttacccccaagtcataagactcctgaacagGCCAtaccagtcaacaccacctcaacaCCACCTCATAAGACTGCCTGCTGCACTTGTTCGAGAGATGTCCAGTTTGCAGCCGGACATGGGGGCCCTCATCAGCATAATTCAGACATGCCCCTCGCTTATCTTTGAAGAGGGGGCAGGAGCTAATCTACGCTGCCATGTCTATCAATGGGGCTCTGGCAATGACCTTACCTCTTGCCTGCCCACCAATGGTCGTCGATGGGGAGAACAGAATTAGaaacatgtatgGAGCCAGCACATGGAGACTTGCAAAATGATGTGATGAAGTCCAGACCGACAGACGCACTTGATACTGATGTCCTTGAATGTAGAGAGACCTGGAACTCATCATAAAATGTTTACTAGACACAA
>XM_021576476.2
ttgctgactctatcctctctcccatCCATTCCCTGATAGGGATGCGGTTGCCATGGCAACTGATGAGTCACTGCCAGCTCTCTGCTTTCAGCTGTCGTCCTCTGATGTGATTCTTTCAGTGAGGGGGGCAGCAAGGGCCTCGGTCTCCACCCTGTCTGCTTCATGAGCATATTGATCAGAGAACTCCACCATGTGCATTTGTTGCAGTTGAGCGTAAAGATCCATCAATGCGGGTGTCGGAGCCAGAGGATCCTGGGGGAGCTCTACAGGCCAAACGGGAGCGTTTCGGATGGGCAACATCCCCACCTCAGTGAAGCACTGCCTGAGCTATGAACAACTCATCCAGGATTATCCGTGGCTAGGAAGCCGGCTGCAGGAGGAGAAGTGCACTTTAACACGTGAATTTCCAGAGTATGTTAAAATGATTGAAGTTGGACCAAGAGACGGACTTCAAAATGAAAAGGAAATGGTTCCGACAAGAGTCAAAATCCAGCTGATAAACATGCTCTCGGAAACAGGCCTGCCTGTGATCGAGGCCACCAGCTTTGTGTCTTCAAAGTGGGTACCACAGATGGCGGACCACACTGAAGTGCTTCAAGCCATCCACAGATCTTCTCATGCTCGTTATCCTGTACTGACACCCAACATGCACGGCTTTCAGGATGCTGTTGCAGCTGGTGCTACTGAAGTGGCCGTGTTTGGGTCTGCCTCTGAGACCTTCAgtcaaaaaaatataaattgcTCTATTGATGACAGCATGCTGAGGTTCGAGGAAGTCATTTGCACTGCTAAACAACAACAGATTCCAGTCCGTGGATATGTTTCTTGTGCACTAGGATGTCCATATGAGGGACCCATTGAACCCACTAAAGTTGCAGAGGTGGTAAAGCGGTTGTATGAACTGGGCTGCTATGAGGTGTCTCTGGGGGATACTATCGGCGTGGGCACCCCAGGCTCCATGGCCAAGATGCTGCAATACGTCATGAAAGAGGTACCCAGCAGCGCTCTGGCCGTTCACTGCCACGACACCTACGGCCAGGCTCTGGCCAACATCCTAACTGCACTGCAGATGGGGATTTGTGCGGTGGACTCATCTGTAGCAGGTCTGGGTGGGTGCCCATATGCCCAGGGAGCCTCTGGTAACGTGTCAACAGAAGATGTTCTCTATATGCTCCATGGCATGGGCATTAAAACTGGAGTCGATCTCTCCAAGGTAATAGAGGCAGGTGATTTCATCTGCAAAGCCTTAAATCGCAAGACCAACTCCAAGGTAGCCCAAGCAAGAAGCAAGTCCTCATGATTAATCTGTGCATTGATACAAGAAGAAGATAAAGACCTTTCCCTTTAGCACAGTGTTTTGTCGTGTTGATGCTGCATATAGATAGCCCATGATTCTATACAAAGTGCAATATACATACTTTTTTTAAACCACAATTGATGGCCATTTAGCAGAGGCACTTTATTAAAACGTTGTTGGATAAGGCCTACTTAAATTCAAGAAATAACTGAACTTTTTTTAACCAAAAAACCTCTTCCAGTTATCACGTATAGtctgtctggtaggaggtgaaagATAGAGATGACTCCTCACTAAGTTGTGAAAGTTATTCATGGTGTTTCTGTGGGGGTCTCTTCCCATTCATTTCCAGCTCAGCAGGAGAGTCCTGCTGGATTTTAAACCAGTGAGTGTCGATCATTGTCTccctcaaaatgtatttgtctccCTCAAAACGTATTTTCAAGTCCTTTGCTCTAGTAACATGGAAGTCTGCCTGTCTCCACATGTAAAATATTGATTTGTTTTTTCTCTCTTCAAAGCAAATGTTATTTGTCAGGTGCCAAATAAAACCGatatagacttta
>XM_036956236.1
TGGGAGGGTGCAGGTTGGGAACATGTGAAAGGACAGAGAGGGGGCATCACCCTGGGATGCAGAAACAGGCACTACAGTAACTGGCGTCACACCGCAAACACTCTATTTCAAAATAAATTCAAATGTCGTGATAAGAGCACAATATATGAAAGAATTGTTATGCCTACTGTTTAACGTTGACTTGCGGTCTAAAAGCAGGATCCTGTTCCTCCCAAAATTTACATATACACTAGATAAATTATAGGGACGCTATGTgtctccatcttggcactcccccacgTTGTAgaaaatattttggaagctatagaaatgcatttattcatgtattttattctattacagacaccttaatacatacttttaaattatattatgtgagctaaaaaaaataataataatccttaAAAGTATCATTTTGAGCgattactaatgttactgtcctcaCTACAATaacaaaaatacttaaatacatggaATGTTGTGCTtgaaatatctcatttaaatATTGTAGAATTTAATTAATTCGTTCCTCCCCCACCATCTATCTTAAGTAAGTCTGCGTATTGGCAGATAGAGAGAGTACATCAAGTGAACACCCTTCTATCTTCCTCTCAACTTTTCCACCTACAACTGTTAGATTAGTTAGTCAGGtataatataaaaaaatatgtattatatgttatatataatATGTAAAAGATTATCAACTGTAAAATCGACAGTAGATATTATTAGAAACTCTGAACTGACACATTTTACACGTGTCATGCattattaaacattattaaaatgccAGCAGTGATCTGAAGATCAAAGTGTTCTGGGCTTAAAGAGCGACTGCCCCTAAAAAACAACGAATCCCTTTGAAAATGGCCTATGAGGCGTCCTTGTGAATCAGAAtcatttattctagtgtcaaaattgattACAAAGTGTAATAGCATAATTTTGGTTTTAAAGTCAGTCTCGCCTAAAATGGAGTTTGGAACCTCAGTGTGTCACAACAAATAAGTGAAGGTTGGGTTTGGATTACAATTATGTCAACAAATCATGCTACCCTTTTCCAAGCTCCACAAGCAAATCGCCCCTCAGCCTCCCTTTATTGAATGGGGCTCCCGTTGTTTCATCGCCCCCAACCAACACGTTCAAAGGATCATGCTTTTCCAGAAGGCTGCACAGCCAAAAGACAATGGTTTGCATGCCCTGCCGAAGGACCCTATCATGCGCAATAGGTGGTTGGATTTCATTGCTCTccagtggtgACAAAGTGCACAGTTGGTCATGAACGGATGCCAGGACCAACAAGAAAGAGCAAAGCTTCTCAGGAAAGACCTCAGAATAAAAGTACTTGTGTGataaggaggaccgagcactcccccattctcatcgacagggctgtagtggagcaggttgagagcttcaagttccttggtgtccacatcaccaacaaactagaatggtccaaacacaacaggacagttgtgaagagggcacgacaaagcctattccccctcaggaaactaaaaagatttggcatgggtcctgagatcctcaaaaggttctacagctggagcatgactggttgcatcactgcctggtacggcaattgctcagcctccgaccgcaagacactacagagggtagtgcgtactgcccagcacatcactggggctaagctgcctgccatccaggacctctataccaggcggtgtcagaggaaggccctaaaaattgtcaaagaccccagccaccccagtcatagactgttctctctactaccgcatggcaagcagtaccagagtgccaagtctaggacaaaaaggcttctcaacagtttttacccccaagtcataagactcctgaacagGCCAtaccagtcaacaccacctcaacaCCACCTCATAAGACTGCCTGCTGCACTTGTTCGAGAGATGTCCAGTTTGCAGCCGGACATGGGGGCCCTCATCAGCATAATTCAGACATGCCCCTCGCTTATCTTTGAAGAGGGGGCAGGAGCTAATCTACGCTGCCATGTCTATCAATGGGGCTCTGGCAATGACCTTACCTCTTGCCTGCCCACCAATGGTCGTCGATGGGGAGAACAGAATTAGaaacatgtatgGAGCCAGCACATGGAGACTTGCAAAATGATGTGATGAAGTCCAGACCGACAGACGCACTTGATACTGATGTCCTTGAATGTAGAGAGACCTGGAACTCATCATAAAATGTTTACTAGACACAA
>TU1930401
TCTTTCAGTGAGGGGGGCAGCAAGGGCCTCGGTCTCCACCCTGTCTGCTTCATGAGCATATTGATCAGAGAACTCCACCATGTGCATTTGTTGCAGTTGAGCGTAAAGATCCATCAATGCGGGTGTCGGAGCCAGAGGATCCTGGGGGAGCTCTACAGGCCAAACGGGAGCGTTTCGGATGGGCAACATCCCCACCTCAGTGAAGCACTGCCTGAGCTATGAACAACTCATCCAGGATTATCCGTGGCTAGGAAGCCGGCTGCAGGAGGAGAAGTATCTTTGAAGAGGGGGCAGGAGCTAATCTACGCTGCCATGTCTATCAATGGGGCTCTGGCAATGACCTTACCTCTTGCCTGCCCACCAATGGTCGTCGATGGGGAGAACAGAATTAGaaacatgtatgGAGCCAGCACATGGAGACTTGCAAAATGATGTGATGAAGTCCAGACCGACAGACGCACTTGATACTGATGTCCTTGAATGTAGAGAGACCTGGAACTCATCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576477.2 False 1891 mRNA 0.46 10 34347154 34379366
XM_036956235.1 False 1402 mRNA 0.51 6 34350485 34354777
XM_021576476.2 False 1863 mRNA 0.47 9 34350519 34379366
XM_036956236.1 False 2245 mRNA 0.43 6 34350910 34354777
TU1930401 True 505 lncRNA 0.52 3 34350630 34354756

Neighbor

gene id symbol gene type direction distance location
bmp5 LOC106589803 coding upstream 35004 34273867 ~ 34312150 (+)
col21a1 LOC106589801 coding upstream 75606 34225871 ~ 34271548 (+)
zmp:0000000760 LOC106589800 coding upstream 138168 34184080 ~ 34208986 (+)
LOC110499368 LOC106589788 coding upstream 168223 33984466 ~ 34178931 (+)
rab23 LOC106589799 coding upstream 388426 33949752 ~ 33958728 (+)
LOC118942064 NA coding downstream 119665 34499031 ~ 34503666 (+)
klhl31 LOC106589810 coding downstream 189689 34569055 ~ 34573880 (+)
gclc gsh1 coding downstream 203950 34583316 ~ 34591320 (+)
elovl5 LOC100192340 coding downstream 215591 34594957 ~ 34606103 (+)
LOC110499384 LOC106589811 coding downstream 236334 34615700 ~ 34626578 (+)
G1687681 NA non-coding upstream 15006 34331819 ~ 34332148 (+)
G1687679 NA non-coding upstream 18008 34328942 ~ 34329146 (+)
G1687676 NA non-coding upstream 20467 34326336 ~ 34326687 (+)
G1687674 NA non-coding upstream 21570 34325367 ~ 34325584 (+)
G1687628 NA non-coding upstream 134544 34212383 ~ 34212610 (+)
G1687730 NA non-coding downstream 31452 34410818 ~ 34411022 (+)
G1687731 NA non-coding downstream 31824 34411190 ~ 34411410 (+)
G1687732 NA non-coding downstream 32155 34411521 ~ 34411722 (+)
G1687735 NA non-coding downstream 35397 34414763 ~ 34419287 (+)
G1687845 NA non-coding downstream 247352 34626718 ~ 34683245 (+)
G1687675 NA other upstream 20900 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 1161878 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 1685506 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 4770596 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 4889233 29437357 ~ 29458499 (+)
LOC110499396 LOC106589821 other downstream 1002343 35381609 ~ 35384567 (+)
G1689347 NA other downstream 1302001 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 1321854 35701200 ~ 35702156 (+)
G1689671 NA other downstream 1502212 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 1741250 36120616 ~ 36125390 (+)

Expression


Co-expression Network